Wall clock time and date at job start Tue Mar 31 2020 07:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48495 * 109.47093 * 269.99989 * 3 2 1 5 5 H 1.48500 * 109.46710 * 29.99881 * 3 2 1 6 6 H 1.48497 * 109.47018 * 149.99726 * 3 2 1 7 7 C 1.37885 * 119.99850 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99826 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99927 * 0.27912 * 7 2 1 10 10 H 1.08995 * 109.47012 * 299.72233 * 9 7 2 11 11 O 1.42903 * 109.46996 * 59.72589 * 9 7 2 12 12 C 1.52997 * 109.47162 * 179.71733 * 9 7 2 13 13 N 1.46895 * 109.47568 * 180.14979 * 12 9 7 14 14 C 1.47006 * 111.00282 * 170.33541 * 13 12 9 15 15 C 1.53106 * 109.25732 * 182.39594 * 14 13 12 16 16 O 1.43012 * 109.25431 * 303.14782 * 15 14 13 17 17 C 1.43012 * 113.74164 * 58.67524 * 16 15 14 18 18 H 1.09004 * 109.50588 * 61.25661 * 17 16 15 19 19 C 1.53001 * 109.54582 * 181.36867 * 17 16 15 20 20 C 1.50700 * 109.46994 * 294.80457 * 19 17 16 21 21 C 1.38240 * 119.99730 * 269.72725 * 20 19 17 22 22 C 1.38232 * 119.99875 * 179.79102 * 21 20 19 23 23 C 1.38240 * 119.99770 * 0.45851 * 22 21 20 24 24 C 1.38238 * 119.99972 * 359.77123 * 23 22 21 25 25 C 1.38227 * 120.00007 * 0.02562 * 24 23 22 26 26 C 1.47017 * 111.00096 * 293.97164 * 13 12 9 27 27 H 0.96995 * 120.00055 * 359.97438 * 1 2 3 28 28 H 0.96693 * 114.00331 * 59.99676 * 11 9 7 29 29 H 1.08998 * 109.47584 * 300.15752 * 12 9 7 30 30 H 1.09004 * 109.46640 * 60.15449 * 12 9 7 31 31 H 1.09001 * 109.50782 * 302.32570 * 14 13 12 32 32 H 1.08996 * 109.50829 * 62.45765 * 14 13 12 33 33 H 1.09002 * 109.50268 * 183.21364 * 15 14 13 34 34 H 1.08998 * 109.50502 * 63.08814 * 15 14 13 35 35 H 1.09003 * 109.46821 * 54.80406 * 19 17 16 36 36 H 1.09002 * 109.46641 * 174.80283 * 19 17 16 37 37 H 1.07998 * 119.99931 * 359.97438 * 21 20 19 38 38 H 1.07995 * 120.00150 * 180.24747 * 22 21 20 39 39 H 1.08001 * 119.99809 * 179.78743 * 23 22 21 40 40 H 1.07995 * 119.99573 * 179.97438 * 24 23 22 41 41 H 1.08004 * 119.99972 * 179.97438 * 25 24 23 42 42 H 1.09000 * 109.50602 * 297.53956 * 26 13 12 43 43 H 1.09004 * 109.50613 * 57.66546 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 -0.0052 10 1 0.6244 -2.5608 0.8844 11 8 0.4295 -2.5698 -1.1724 12 6 2.2452 -3.6621 -0.0105 13 7 1.5108 -4.9343 -0.0197 14 6 2.4195 -6.0656 -0.2553 15 6 1.6068 -7.3617 -0.3167 16 8 0.8618 -7.5090 0.8951 17 6 -0.0340 -6.4251 1.1556 18 1 -0.7674 -6.3578 0.3520 19 6 -0.7530 -6.6634 2.4850 20 6 -1.6325 -7.8817 2.3690 21 6 -2.9446 -7.7500 1.9542 22 6 -3.7500 -8.8679 1.8436 23 6 -3.2461 -10.1165 2.1569 24 6 -1.9354 -10.2476 2.5762 25 6 -1.1288 -9.1302 2.6827 26 6 0.7620 -5.1195 1.2318 27 1 -0.4850 0.8400 0.0004 28 1 0.9216 -2.5207 -2.0033 29 1 2.8737 -3.5990 -0.8988 30 1 2.8700 -3.6099 0.8812 31 1 2.9445 -5.9202 -1.1994 32 1 3.1423 -6.1273 0.5581 33 1 2.2820 -8.2093 -0.4342 34 1 0.9212 -7.3217 -1.1631 35 1 -0.0167 -6.8205 3.2732 36 1 -1.3654 -5.7949 2.7276 37 1 -3.3395 -6.7740 1.7137 38 1 -4.7739 -8.7656 1.5158 39 1 -3.8765 -10.9896 2.0738 40 1 -1.5420 -11.2230 2.8214 41 1 -0.1049 -9.2326 3.0108 42 1 1.4584 -5.1661 2.0691 43 1 0.0771 -4.2834 1.3734 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335626641.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:26 Heat of formation + Delta-G solvation = -70.149230 kcal Electronic energy + Delta-G solvation = -23378.878736 eV Core-core repulsion = 20002.680877 eV Total energy + Delta-G solvation = -3376.197859 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.75282 -38.83917 -36.36673 -34.34168 -33.69239 -32.08497 -30.86150 -30.52961 -29.16554 -27.09769 -25.76868 -23.91805 -22.74739 -22.53610 -21.03317 -20.43166 -19.85813 -17.08351 -16.77568 -16.25043 -15.73757 -15.38036 -14.87610 -14.82799 -14.72498 -14.50614 -14.45797 -13.84922 -13.38452 -13.37622 -13.15873 -13.02614 -12.69449 -12.38023 -12.11905 -11.79679 -11.37200 -11.20112 -11.17464 -11.00792 -10.93283 -10.87122 -10.84226 -10.52709 -10.30518 -10.02620 -9.41997 -8.95862 -8.88895 -8.64590 -8.58565 -8.11761 -7.72464 -6.02116 -4.20542 1.37148 1.43375 3.26189 3.33336 3.35655 3.76639 3.92457 4.25184 4.43270 4.75828 4.88059 4.99011 5.11472 5.20767 5.23457 5.25944 5.31783 5.36894 5.44556 5.51930 5.54629 5.65368 5.72588 5.77370 5.93559 6.00616 6.03306 6.07192 6.10653 6.22379 6.27165 6.32412 6.48268 6.51429 6.51639 6.69248 6.77687 7.02942 7.34814 7.46243 7.52602 7.75082 7.84857 8.18194 8.83120 9.44575 9.60767 11.01982 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024673 B = 0.003400 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.591980 B = 8232.150983 C = 8917.472226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.080 3.920 3 Si 0.889 3.111 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.575 4.575 8 H 0.054 0.946 9 C 0.238 3.762 10 H 0.054 0.946 11 O -0.554 6.554 12 C 0.031 3.969 13 N -0.524 5.524 14 C 0.015 3.985 15 C 0.068 3.932 16 O -0.383 6.383 17 C 0.103 3.897 18 H 0.068 0.932 19 C -0.076 4.076 20 C -0.071 4.071 21 C -0.118 4.118 22 C -0.122 4.122 23 C -0.129 4.129 24 C -0.124 4.124 25 C -0.100 4.100 26 C 0.027 3.973 27 H 0.260 0.740 28 H 0.343 0.657 29 H 0.064 0.936 30 H 0.027 0.973 31 H 0.079 0.921 32 H 0.033 0.967 33 H 0.090 0.910 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.123 0.877 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.034 0.966 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.212 -18.058 3.581 18.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.614 4.614 8 H 0.072 0.928 9 C 0.180 3.820 10 H 0.072 0.928 11 O -0.356 6.356 12 C -0.097 4.097 13 N -0.249 5.249 14 C -0.113 4.113 15 C -0.009 4.009 16 O -0.302 6.302 17 C 0.045 3.955 18 H 0.086 0.914 19 C -0.114 4.114 20 C -0.071 4.071 21 C -0.136 4.136 22 C -0.140 4.140 23 C -0.147 4.147 24 C -0.142 4.142 25 C -0.118 4.118 26 C -0.102 4.102 27 H 0.070 0.930 28 H 0.186 0.814 29 H 0.083 0.917 30 H 0.045 0.955 31 H 0.098 0.902 32 H 0.051 0.949 33 H 0.108 0.892 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.109 0.891 37 H 0.141 0.859 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.139 0.861 42 H 0.052 0.948 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.176 -18.134 3.785 18.795 hybrid contribution 1.693 1.246 0.042 2.102 sum -1.483 -16.889 3.827 17.380 Atomic orbital electron populations 1.70076 1.05893 1.26422 1.46955 1.25019 0.94695 0.99067 0.93830 0.86673 0.79938 0.83536 0.78226 1.20503 1.21096 1.19906 1.21648 0.93133 0.91612 1.54971 0.92771 1.19306 0.87763 0.88498 0.86479 0.92849 1.86553 1.37728 1.96295 1.14983 1.23117 0.97319 0.89616 0.99619 1.62236 1.26765 1.02005 1.33890 1.22779 0.95003 0.92327 1.01208 1.22575 0.94356 0.96538 0.87416 1.87912 1.56344 1.44120 1.41798 1.22098 0.91079 0.85707 0.96614 0.91397 1.20663 0.97664 0.96104 0.96932 1.19800 0.93998 0.94952 0.98323 1.21136 0.93670 0.98979 0.99778 1.21102 0.99731 0.92749 1.00456 1.21094 0.95832 0.97314 1.00508 1.21111 0.94236 0.98458 1.00441 1.21039 0.99486 0.91947 0.99358 1.22778 0.98134 0.98320 0.90948 0.92978 0.81430 0.91731 0.95498 0.90245 0.94880 0.89185 0.92570 0.90240 0.89083 0.85927 0.86315 0.86560 0.86466 0.86068 0.94804 0.88711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.16 12.83 55.43 0.71 -24.45 16 2 C 0.08 2.23 5.40 -17.82 -0.10 2.13 16 3 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.58 -15.65 8.76 -34.44 -0.30 -15.96 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.24 5.94 2.70 -27.88 -0.08 5.87 16 10 H 0.05 1.46 6.51 -51.93 -0.34 1.12 16 11 O -0.55 -14.31 12.58 -35.23 -0.44 -14.75 16 12 C 0.03 0.63 4.56 -3.83 -0.02 0.61 16 13 N -0.52 -9.56 4.59 -234.31 -1.08 -10.64 16 14 C 0.02 0.23 5.65 -3.71 -0.02 0.21 16 15 C 0.07 0.92 7.01 37.21 0.26 1.19 16 16 O -0.38 -5.70 9.98 -35.23 -0.35 -6.05 16 17 C 0.10 1.54 2.79 -26.68 -0.07 1.47 16 18 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 19 C -0.08 -0.97 5.06 -27.88 -0.14 -1.11 16 20 C -0.07 -0.89 4.97 -104.62 -0.52 -1.41 16 21 C -0.12 -1.41 9.70 -39.58 -0.38 -1.80 16 22 C -0.12 -1.33 10.05 -39.58 -0.40 -1.72 16 23 C -0.13 -1.33 10.05 -39.58 -0.40 -1.73 16 24 C -0.12 -1.33 10.05 -39.59 -0.40 -1.73 16 25 C -0.10 -1.20 9.41 -39.59 -0.37 -1.57 16 26 C 0.03 0.46 4.72 -3.71 -0.02 0.44 16 27 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.34 8.00 9.04 45.56 0.41 8.41 16 29 H 0.06 1.29 8.04 -51.93 -0.42 0.87 16 30 H 0.03 0.56 8.12 -51.93 -0.42 0.13 16 31 H 0.08 1.11 8.09 -51.93 -0.42 0.69 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.97 8.09 -51.93 -0.42 0.55 16 36 H 0.09 1.09 8.08 -51.93 -0.42 0.67 16 37 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 41 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 42 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.09 1.81 6.37 -51.93 -0.33 1.48 16 LS Contribution 351.11 15.07 5.29 5.29 Total: -1.00 -30.87 351.11 -9.97 -40.83 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -6.13 Total: 8.88 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -2.95 Total: -15.11 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: -0.36 Total: -35.09 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.79 Total: -20.81 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.87 -9.97 -40.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335626641.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.315 kcal (2) G-P(sol) polarization free energy of solvation -30.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds