Wall clock time and date at job start Tue Mar 31 2020 07:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00315 * 2 1 4 4 H 1.48493 * 109.47322 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46927 * 300.00546 * 3 2 1 6 6 H 1.48495 * 109.46740 * 60.00086 * 3 2 1 7 7 C 1.37882 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99888 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99558 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.47274 * 300.00180 * 9 7 2 11 11 O 1.42901 * 109.47142 * 60.00297 * 9 7 2 12 12 C 1.52995 * 109.46630 * 180.02562 * 9 7 2 13 13 N 1.46899 * 109.46995 * 180.02562 * 12 9 7 14 14 C 1.47107 * 111.05840 * 293.61473 * 13 12 9 15 15 C 1.53104 * 109.27905 * 177.62654 * 14 13 12 16 16 O 1.43016 * 109.25493 * 56.85076 * 15 14 13 17 17 C 1.43013 * 113.74201 * 301.32706 * 16 15 14 18 18 H 1.09001 * 109.53874 * 298.71833 * 17 16 15 19 19 C 1.52999 * 109.51073 * 178.61098 * 17 16 15 20 20 C 1.50702 * 109.47217 * 65.21410 * 19 17 16 21 21 C 1.38241 * 120.00023 * 269.73048 * 20 19 17 22 22 C 1.38236 * 119.99962 * 179.76602 * 21 20 19 23 23 C 1.38232 * 119.99765 * 0.50659 * 22 21 20 24 24 C 1.38243 * 120.00035 * 359.74817 * 23 22 21 25 25 C 1.38232 * 119.99843 * 90.00310 * 20 19 17 26 26 C 1.47018 * 111.00176 * 170.00206 * 13 12 9 27 27 H 0.96999 * 119.99977 * 0.02562 * 1 2 3 28 28 H 0.96704 * 113.99885 * 59.99765 * 11 9 7 29 29 H 1.08999 * 109.47720 * 60.00014 * 12 9 7 30 30 H 1.08997 * 109.47276 * 299.99979 * 12 9 7 31 31 H 1.08997 * 109.49376 * 57.68557 * 14 13 12 32 32 H 1.08996 * 109.53153 * 297.58944 * 14 13 12 33 33 H 1.08995 * 109.50506 * 296.91474 * 15 14 13 34 34 H 1.08994 * 109.50501 * 176.78179 * 15 14 13 35 35 H 1.08992 * 109.47784 * 185.21892 * 19 17 16 36 36 H 1.09009 * 109.46574 * 305.21798 * 19 17 16 37 37 H 1.07999 * 119.99910 * 0.02562 * 21 20 19 38 38 H 1.08000 * 120.00147 * 180.23154 * 22 21 20 39 39 H 1.08001 * 120.00159 * 179.72280 * 23 22 21 40 40 H 1.07998 * 119.99642 * 179.97438 * 24 23 22 41 41 H 1.07992 * 120.00246 * 0.02562 * 25 20 19 42 42 H 1.09002 * 109.50864 * 62.45469 * 26 13 12 43 43 H 1.09003 * 109.50425 * 302.37108 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8896 11 8 0.4289 -2.5746 -1.1670 12 6 2.2451 -3.6621 -0.0005 13 7 1.5106 -4.9342 -0.0012 14 6 0.7696 -5.1174 1.2564 15 6 -0.0261 -6.4237 1.1886 16 8 0.8686 -7.5078 0.9249 17 6 1.6056 -7.3630 -0.2922 18 1 0.9148 -7.3258 -1.1345 19 6 2.5528 -8.5527 -0.4605 20 6 1.7481 -9.8148 -0.6354 21 6 1.3862 -10.5625 0.4696 22 6 0.6438 -11.7176 0.3096 23 6 0.2723 -12.1305 -0.9562 24 6 0.6388 -11.3856 -2.0617 25 6 1.3766 -10.2278 -1.9012 26 6 2.4178 -6.0663 -0.2395 27 1 -0.4850 0.8400 -0.0004 28 1 0.9208 -2.5291 -1.9984 29 1 2.8718 -3.6044 0.8894 30 1 2.8718 -3.6043 -0.8905 31 1 0.0853 -4.2814 1.4004 32 1 1.4710 -5.1613 2.0896 33 1 -0.7648 -6.3588 0.3898 34 1 -0.5312 -6.5919 2.1397 35 1 3.1795 -8.3968 -1.3385 36 1 3.1831 -8.6433 0.4243 37 1 1.6798 -10.2419 1.4582 38 1 0.3579 -12.2997 1.1731 39 1 -0.3038 -13.0354 -1.0817 40 1 0.3489 -11.7086 -3.0506 41 1 1.6634 -9.6462 -2.7648 42 1 3.1461 -6.1257 0.5693 43 1 2.9372 -5.9233 -1.1871 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335626645.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:29 Heat of formation + Delta-G solvation = -70.201157 kcal Electronic energy + Delta-G solvation = -23203.822063 eV Core-core repulsion = 19827.621952 eV Total energy + Delta-G solvation = -3376.200111 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.79589 -38.88129 -36.38178 -34.30426 -33.78254 -32.08594 -30.94214 -30.56234 -29.09068 -27.36293 -25.61792 -23.66587 -23.07237 -22.61658 -21.15041 -20.39534 -19.83208 -17.10754 -16.82811 -16.27461 -15.76461 -15.40374 -14.94707 -14.84277 -14.72104 -14.51963 -14.42751 -13.97103 -13.46624 -13.38529 -13.15376 -13.02514 -12.76093 -12.43480 -12.15900 -11.90289 -11.38583 -11.20275 -11.15692 -11.07452 -10.94756 -10.92088 -10.82019 -10.52940 -10.30334 -10.03275 -9.43298 -8.98725 -8.95146 -8.72560 -8.58343 -8.11152 -7.72210 -6.02092 -4.20512 1.28984 1.35515 3.25279 3.33619 3.36655 3.69312 3.89698 4.24145 4.43022 4.66757 4.79063 4.91949 5.03563 5.14909 5.22076 5.25587 5.27735 5.33092 5.41949 5.45763 5.52825 5.61552 5.71838 5.72973 5.80170 5.96915 5.99890 6.06210 6.10077 6.18468 6.27717 6.32156 6.39843 6.44403 6.52188 6.60009 6.77943 6.94894 7.34418 7.45908 7.52870 7.75424 7.85225 8.18305 8.83516 9.44817 9.60948 11.02042 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.040456 B = 0.002892 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.938912 B = 9680.394772 C = 9765.140435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.079 3.921 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.574 4.574 8 H 0.055 0.945 9 C 0.237 3.763 10 H 0.054 0.946 11 O -0.554 6.554 12 C 0.031 3.969 13 N -0.524 5.524 14 C 0.019 3.981 15 C 0.067 3.933 16 O -0.383 6.383 17 C 0.103 3.897 18 H 0.066 0.934 19 C -0.075 4.075 20 C -0.072 4.072 21 C -0.099 4.099 22 C -0.123 4.123 23 C -0.128 4.128 24 C -0.123 4.123 25 C -0.119 4.119 26 C 0.023 3.977 27 H 0.260 0.740 28 H 0.343 0.657 29 H 0.027 0.973 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.033 0.967 33 H 0.058 0.942 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.034 0.966 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.916 -21.072 -0.883 21.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.127 4.127 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.613 4.613 8 H 0.073 0.927 9 C 0.179 3.821 10 H 0.071 0.929 11 O -0.356 6.356 12 C -0.096 4.096 13 N -0.249 5.249 14 C -0.109 4.109 15 C -0.009 4.009 16 O -0.302 6.302 17 C 0.044 3.956 18 H 0.084 0.916 19 C -0.112 4.112 20 C -0.072 4.072 21 C -0.117 4.117 22 C -0.141 4.141 23 C -0.146 4.146 24 C -0.141 4.141 25 C -0.137 4.137 26 C -0.106 4.106 27 H 0.070 0.930 28 H 0.186 0.814 29 H 0.045 0.955 30 H 0.082 0.918 31 H 0.113 0.887 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.052 0.948 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.949 -21.145 -0.675 21.246 hybrid contribution 1.519 1.330 0.191 2.028 sum 3.468 -19.815 -0.485 20.122 Atomic orbital electron populations 1.70089 1.05902 1.26312 1.47055 1.25028 0.94696 0.99101 0.93846 0.86619 0.80181 0.83868 0.77712 1.19765 1.20832 1.20897 1.21683 0.93164 0.91590 1.54831 0.92707 1.19313 0.87774 0.88496 0.86504 0.92856 1.86558 1.37719 1.96298 1.14979 1.23113 0.97307 0.89597 0.99610 1.62270 1.27103 1.01872 1.33629 1.22789 0.98370 0.99006 0.90756 1.22638 0.91637 0.85428 1.01244 1.87913 1.56906 1.44328 1.41019 1.22052 0.92929 0.92580 0.88000 0.91565 1.20651 0.96483 0.90872 1.03235 1.19778 0.98439 0.95810 0.93215 1.21058 0.97765 0.94333 0.98570 1.21135 0.98747 0.97032 0.97174 1.21107 1.00649 0.99995 0.92888 1.21096 0.98814 0.95504 0.98646 1.21074 0.98969 0.96831 0.96807 1.22778 0.94837 0.91694 1.01283 0.93033 0.81442 0.95483 0.91759 0.88734 0.94865 0.92353 0.88934 0.89472 0.90238 0.85990 0.86366 0.86492 0.86328 0.86148 0.94794 0.90261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.28 12.84 55.43 0.71 -24.57 16 2 C 0.08 2.22 5.40 -17.82 -0.10 2.12 16 3 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.57 -15.67 8.76 -34.43 -0.30 -15.97 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.24 5.96 2.71 -27.88 -0.08 5.88 16 10 H 0.05 1.47 6.52 -51.93 -0.34 1.13 16 11 O -0.55 -14.37 12.60 -35.23 -0.44 -14.81 16 12 C 0.03 0.64 4.56 -3.83 -0.02 0.62 16 13 N -0.52 -9.56 4.60 -234.23 -1.08 -10.64 16 14 C 0.02 0.33 5.44 -3.66 -0.02 0.31 16 15 C 0.07 1.01 7.01 37.21 0.26 1.27 16 16 O -0.38 -5.69 9.99 -35.23 -0.35 -6.04 16 17 C 0.10 1.39 2.79 -26.68 -0.07 1.32 16 18 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 19 C -0.07 -0.82 5.06 -27.88 -0.14 -0.96 16 20 C -0.07 -0.82 4.97 -104.62 -0.52 -1.34 16 21 C -0.10 -1.11 9.42 -39.58 -0.37 -1.48 16 22 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 23 C -0.13 -1.23 10.05 -39.58 -0.40 -1.63 16 24 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 25 C -0.12 -1.25 9.70 -39.59 -0.38 -1.64 16 26 C 0.02 0.34 4.93 -3.71 -0.02 0.32 16 27 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 28 H 0.34 8.00 9.04 45.56 0.41 8.41 16 29 H 0.03 0.56 8.12 -51.93 -0.42 0.14 16 30 H 0.06 1.28 8.04 -51.93 -0.42 0.86 16 31 H 0.09 1.82 6.39 -51.93 -0.33 1.49 16 32 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.09 0.80 8.08 -51.93 -0.42 0.38 16 36 H 0.08 0.85 8.08 -51.92 -0.42 0.43 16 37 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 41 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.08 1.10 8.09 -51.93 -0.42 0.68 16 LS Contribution 351.18 15.07 5.29 5.29 Total: -1.00 -31.10 351.18 -9.97 -41.07 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -6.13 Total: 8.06 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -2.95 Total: -14.40 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: -0.36 Total: -35.21 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.80 Total: -20.86 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.10 -9.97 -41.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335626645.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.131 kcal (2) G-P(sol) polarization free energy of solvation -31.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds