Wall clock time and date at job start Tue Mar 31 2020 07:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00315 * 2 1 4 4 H 1.48493 * 109.47322 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46927 * 300.00546 * 3 2 1 6 6 H 1.48495 * 109.46740 * 60.00086 * 3 2 1 7 7 C 1.37882 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99888 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99558 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.47274 * 300.00180 * 9 7 2 11 11 O 1.42901 * 109.47142 * 60.00297 * 9 7 2 12 12 C 1.52995 * 109.46630 * 180.02562 * 9 7 2 13 13 N 1.46899 * 109.46995 * 180.02562 * 12 9 7 14 14 C 1.47107 * 111.05840 * 293.61473 * 13 12 9 15 15 C 1.53104 * 109.27905 * 177.62654 * 14 13 12 16 16 O 1.43016 * 109.25493 * 56.85076 * 15 14 13 17 17 C 1.43013 * 113.74201 * 301.32706 * 16 15 14 18 18 H 1.09001 * 109.53874 * 298.71833 * 17 16 15 19 19 C 1.52999 * 109.51073 * 178.61098 * 17 16 15 20 20 C 1.50702 * 109.47217 * 65.21410 * 19 17 16 21 21 C 1.38241 * 120.00023 * 269.73048 * 20 19 17 22 22 C 1.38236 * 119.99962 * 179.76602 * 21 20 19 23 23 C 1.38232 * 119.99765 * 0.50659 * 22 21 20 24 24 C 1.38243 * 120.00035 * 359.74817 * 23 22 21 25 25 C 1.38232 * 119.99843 * 90.00310 * 20 19 17 26 26 C 1.47018 * 111.00176 * 170.00206 * 13 12 9 27 27 H 0.96999 * 119.99977 * 0.02562 * 1 2 3 28 28 H 0.96704 * 113.99885 * 59.99765 * 11 9 7 29 29 H 1.08999 * 109.47720 * 60.00014 * 12 9 7 30 30 H 1.08997 * 109.47276 * 299.99979 * 12 9 7 31 31 H 1.08997 * 109.49376 * 57.68557 * 14 13 12 32 32 H 1.08996 * 109.53153 * 297.58944 * 14 13 12 33 33 H 1.08995 * 109.50506 * 296.91474 * 15 14 13 34 34 H 1.08994 * 109.50501 * 176.78179 * 15 14 13 35 35 H 1.08992 * 109.47784 * 185.21892 * 19 17 16 36 36 H 1.09009 * 109.46574 * 305.21798 * 19 17 16 37 37 H 1.07999 * 119.99910 * 0.02562 * 21 20 19 38 38 H 1.08000 * 120.00147 * 180.23154 * 22 21 20 39 39 H 1.08001 * 120.00159 * 179.72280 * 23 22 21 40 40 H 1.07998 * 119.99642 * 179.97438 * 24 23 22 41 41 H 1.07992 * 120.00246 * 0.02562 * 25 20 19 42 42 H 1.09002 * 109.50864 * 62.45469 * 26 13 12 43 43 H 1.09003 * 109.50425 * 302.37108 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8896 11 8 0.4289 -2.5746 -1.1670 12 6 2.2451 -3.6621 -0.0005 13 7 1.5106 -4.9342 -0.0012 14 6 0.7696 -5.1174 1.2564 15 6 -0.0261 -6.4237 1.1886 16 8 0.8686 -7.5078 0.9249 17 6 1.6056 -7.3630 -0.2922 18 1 0.9148 -7.3258 -1.1345 19 6 2.5528 -8.5527 -0.4605 20 6 1.7481 -9.8148 -0.6354 21 6 1.3862 -10.5625 0.4696 22 6 0.6438 -11.7176 0.3096 23 6 0.2723 -12.1305 -0.9562 24 6 0.6388 -11.3856 -2.0617 25 6 1.3766 -10.2278 -1.9012 26 6 2.4178 -6.0663 -0.2395 27 1 -0.4850 0.8400 -0.0004 28 1 0.9208 -2.5291 -1.9984 29 1 2.8718 -3.6044 0.8894 30 1 2.8718 -3.6043 -0.8905 31 1 0.0853 -4.2814 1.4004 32 1 1.4710 -5.1613 2.0896 33 1 -0.7648 -6.3588 0.3898 34 1 -0.5312 -6.5919 2.1397 35 1 3.1795 -8.3968 -1.3385 36 1 3.1831 -8.6433 0.4243 37 1 1.6798 -10.2419 1.4582 38 1 0.3579 -12.2997 1.1731 39 1 -0.3038 -13.0354 -1.0817 40 1 0.3489 -11.7086 -3.0506 41 1 1.6634 -9.6462 -2.7648 42 1 3.1461 -6.1257 0.5693 43 1 2.9372 -5.9233 -1.1871 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335626645.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:28 Heat of formation + Delta-G solvation = -91.317073 kcal Electronic energy + Delta-G solvation = -23204.737718 eV Core-core repulsion = 19827.621952 eV Total energy + Delta-G solvation = -3377.115766 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.89667 -39.82879 -38.08416 -35.95319 -34.73267 -34.21983 -31.68615 -31.59506 -30.80016 -28.73530 -27.10584 -25.20021 -24.35499 -23.37237 -22.38276 -21.59788 -21.28543 -19.09667 -17.64798 -17.38997 -17.12939 -16.69513 -16.51104 -16.23989 -16.15053 -15.76827 -15.61334 -15.43104 -14.99039 -14.63530 -14.37020 -14.19046 -13.96445 -13.57968 -13.21213 -13.12356 -12.90874 -12.87474 -12.73926 -12.69847 -12.29493 -12.19400 -12.00775 -11.87157 -11.75305 -11.42134 -11.05618 -10.71500 -10.59650 -10.07285 -9.73072 -9.51546 -9.22173 -8.14234 -6.40233 0.51979 0.59186 1.39126 1.40525 1.52467 2.37149 2.74465 2.84548 3.04901 3.12276 3.70424 3.99918 4.01873 4.06717 4.12881 4.17823 4.22919 4.25362 4.32294 4.37994 4.44242 4.50252 4.61082 4.63626 4.65899 4.71916 4.75078 4.82709 4.87736 4.97766 5.02724 5.09734 5.24486 5.26262 5.59007 5.65133 5.69960 5.72809 5.80327 5.93230 6.11876 6.15083 6.19698 6.26243 6.73072 7.34148 7.61489 8.90357 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.040456 B = 0.002892 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.938912 B = 9680.394772 C = 9765.140435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.025 3.975 3 Si 0.961 3.039 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.280 1.280 7 C -0.588 4.588 8 H 0.059 0.941 9 C 0.238 3.762 10 H 0.020 0.980 11 O -0.570 6.570 12 C 0.049 3.951 13 N -0.536 5.536 14 C 0.021 3.979 15 C 0.075 3.925 16 O -0.385 6.385 17 C 0.106 3.894 18 H 0.057 0.943 19 C -0.067 4.067 20 C -0.088 4.088 21 C -0.116 4.116 22 C -0.132 4.132 23 C -0.133 4.133 24 C -0.130 4.130 25 C -0.130 4.130 26 C 0.024 3.976 27 H 0.261 0.739 28 H 0.353 0.647 29 H 0.024 0.976 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.034 0.966 33 H 0.050 0.950 34 H 0.115 0.885 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.120 0.880 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.132 0.868 42 H 0.037 0.963 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.012 -22.206 -1.457 22.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.177 4.177 3 Si 0.785 3.215 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.626 4.626 8 H 0.077 0.923 9 C 0.180 3.820 10 H 0.038 0.962 11 O -0.373 6.373 12 C -0.079 4.079 13 N -0.261 5.261 14 C -0.107 4.107 15 C -0.002 4.002 16 O -0.304 6.304 17 C 0.048 3.952 18 H 0.075 0.925 19 C -0.104 4.104 20 C -0.088 4.088 21 C -0.134 4.134 22 C -0.150 4.150 23 C -0.151 4.151 24 C -0.148 4.148 25 C -0.148 4.148 26 C -0.104 4.104 27 H 0.070 0.930 28 H 0.197 0.803 29 H 0.042 0.958 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.133 0.867 35 H 0.125 0.875 36 H 0.100 0.900 37 H 0.138 0.862 38 H 0.153 0.847 39 H 0.157 0.843 40 H 0.156 0.844 41 H 0.150 0.850 42 H 0.055 0.945 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.064 -22.300 -1.252 22.544 hybrid contribution 1.140 1.604 0.355 2.000 sum 4.204 -20.696 -0.897 21.137 Atomic orbital electron populations 1.70226 1.07647 1.27291 1.48402 1.25901 0.95493 1.02917 0.93395 0.85497 0.79114 0.79151 0.77708 1.18734 1.20415 1.20561 1.22067 0.93512 0.92766 1.54250 0.92310 1.19159 0.87766 0.89963 0.85110 0.96204 1.86504 1.38617 1.96443 1.15705 1.22715 0.95938 0.89398 0.99849 1.62189 1.27799 1.02009 1.34105 1.22747 0.98067 0.99360 0.90566 1.22595 0.91124 0.84274 1.02197 1.87930 1.56902 1.43927 1.41650 1.22108 0.92883 0.93041 0.87133 0.92543 1.20615 0.95940 0.89583 1.04262 1.19879 0.99150 0.96119 0.93689 1.21200 0.98499 0.95092 0.98589 1.21410 0.98437 0.96898 0.98224 1.21444 1.00385 1.00681 0.92618 1.21422 0.98353 0.95225 0.99805 1.21314 0.99138 0.97393 0.96964 1.22872 0.94558 0.90867 1.02074 0.92992 0.80319 0.95801 0.90808 0.91496 0.94779 0.93172 0.86686 0.87536 0.89974 0.86187 0.84726 0.84314 0.84357 0.85007 0.94473 0.88796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.88 12.84 21.45 0.28 -53.60 16 2 C 0.03 1.42 5.40 84.66 0.46 1.88 16 3 Si 0.96 43.25 29.54 68.60 2.03 45.28 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.59 -32.24 8.76 25.60 0.22 -32.01 16 8 H 0.06 3.11 7.74 -2.91 -0.02 3.08 16 9 C 0.24 12.21 2.71 29.85 0.08 12.30 16 10 H 0.02 1.16 6.52 -2.39 -0.02 1.14 16 11 O -0.57 -30.11 12.60 -148.98 -1.88 -31.99 16 12 C 0.05 2.01 4.56 86.30 0.39 2.40 16 13 N -0.54 -19.45 4.60 -894.97 -4.11 -23.56 16 14 C 0.02 0.74 5.44 86.30 0.47 1.21 16 15 C 0.08 2.21 7.01 72.02 0.50 2.72 16 16 O -0.39 -11.05 9.99 -148.98 -1.49 -12.54 16 17 C 0.11 2.75 2.79 30.63 0.09 2.84 16 18 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 19 C -0.07 -1.34 5.06 29.85 0.15 -1.19 16 20 C -0.09 -1.88 4.97 -19.86 -0.10 -1.97 16 21 C -0.12 -2.46 9.42 22.27 0.21 -2.25 16 22 C -0.13 -2.45 10.05 22.27 0.22 -2.23 16 23 C -0.13 -2.28 10.05 22.27 0.22 -2.06 16 24 C -0.13 -2.28 10.05 22.27 0.22 -2.06 16 25 C -0.13 -2.53 9.70 22.27 0.22 -2.31 16 26 C 0.02 0.69 4.93 86.31 0.43 1.12 16 27 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 28 H 0.35 16.62 9.04 -74.05 -0.67 15.95 16 29 H 0.02 0.99 8.12 -2.39 -0.02 0.97 16 30 H 0.07 2.87 8.04 -2.39 -0.02 2.85 16 31 H 0.07 2.71 6.39 -2.39 -0.02 2.70 16 32 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 35 H 0.11 1.71 8.08 -2.39 -0.02 1.69 16 36 H 0.08 1.61 8.08 -2.38 -0.02 1.59 16 37 H 0.12 2.49 8.06 -2.91 -0.02 2.47 16 38 H 0.13 1.94 8.06 -2.91 -0.02 1.91 16 39 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 40 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 41 H 0.13 2.14 8.06 -2.91 -0.02 2.12 16 42 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.09 2.40 8.09 -2.39 -0.02 2.38 16 Total: -1.00 -66.46 351.18 -1.07 -67.53 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: 0.32 Total: 30.50 kcal Atomic # 6 Polarization: -25.41 SS G_CDS: 3.79 Total: -21.62 kcal Atomic # 7 Polarization: -73.32 SS G_CDS: -3.84 Total: -77.16 kcal Atomic # 8 Polarization: -41.16 SS G_CDS: -3.36 Total: -44.53 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -66.46 -1.07 -67.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335626645.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.786 kcal (2) G-P(sol) polarization free energy of solvation -66.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds