Wall clock time and date at job start Tue Mar 31 2020 06:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34574 * 126.34370 * 2 1 4 4 N 1.34099 * 107.88537 * 180.02562 * 3 2 1 5 5 C 1.31472 * 108.63399 * 359.97438 * 4 3 2 6 6 C 1.47129 * 125.75914 * 179.97438 * 5 4 3 7 7 N 1.31498 * 126.49916 * 179.97438 * 6 5 4 8 8 N 1.28509 * 109.88813 * 180.02562 * 7 6 5 9 9 C 1.31545 * 110.11383 * 0.02562 * 8 7 6 10 10 N 1.38233 * 126.34673 * 180.02562 * 9 8 7 11 11 C 1.46898 * 111.00305 * 236.01991 * 10 9 8 12 12 C 1.46904 * 110.99979 * 359.97438 * 10 9 8 13 13 H 1.09000 * 109.47079 * 54.99346 * 12 10 9 14 14 C 1.53009 * 109.46869 * 294.99901 * 12 10 9 15 15 C 1.50699 * 109.47323 * 175.00140 * 12 10 9 16 16 H 1.08000 * 119.99876 * 359.97438 * 15 12 10 17 17 C 1.37880 * 120.00003 * 179.97438 * 15 12 10 18 18 N 1.31508 * 119.99944 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 119.99829 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.47185 * 60.00265 * 19 17 15 21 21 H 1.48504 * 109.46705 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47269 * 299.99958 * 19 17 15 23 23 N 1.36351 * 107.31074 * 359.97438 * 9 8 7 24 24 C 1.46501 * 127.15966 * 180.26338 * 23 9 8 25 25 O 1.34543 * 108.49027 * 0.22520 * 5 4 3 26 26 H 1.09006 * 109.47068 * 90.00053 * 1 2 3 27 27 H 1.08997 * 109.47715 * 210.00300 * 1 2 3 28 28 H 1.09001 * 109.47012 * 330.00341 * 1 2 3 29 29 H 1.07998 * 126.05541 * 0.03164 * 3 2 1 30 30 H 1.09001 * 109.47183 * 59.99771 * 11 10 9 31 31 H 1.08998 * 109.47050 * 180.02562 * 11 10 9 32 32 H 1.09000 * 109.46968 * 299.99840 * 11 10 9 33 33 H 1.09004 * 109.46560 * 300.00055 * 14 12 10 34 34 H 1.08996 * 109.46848 * 59.99672 * 14 12 10 35 35 H 1.08995 * 109.47098 * 179.97438 * 14 12 10 36 36 H 0.97001 * 120.00291 * 180.02562 * 18 17 15 37 37 H 1.08994 * 109.47196 * 269.71020 * 24 23 9 38 38 H 1.08997 * 109.47273 * 29.70990 * 24 23 9 39 39 H 1.09002 * 109.46853 * 149.70831 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3045 1.0840 0.0000 4 7 3.5765 0.6594 -0.0006 5 6 3.5805 -0.6553 -0.0004 6 6 4.7771 -1.5115 -0.0014 7 7 4.7981 -2.8263 -0.0007 8 7 6.0134 -3.2441 -0.0014 9 6 6.8428 -2.2230 -0.0020 10 7 8.2235 -2.2891 -0.0034 11 6 8.7872 -1.5489 1.1334 12 6 8.6838 -3.6841 -0.0035 13 1 8.2370 -4.2141 -0.8446 14 6 8.2659 -4.3591 1.3046 15 6 10.1852 -3.7178 -0.1287 16 1 10.7418 -2.7951 -0.2014 17 6 10.8483 -4.9265 -0.1505 18 7 10.1705 -6.0500 -0.0624 19 14 12.7093 -4.9681 -0.3065 20 1 13.3184 -4.2454 0.8389 21 1 13.1745 -6.3784 -0.3064 22 1 13.1144 -4.3138 -1.5765 23 7 6.0882 -1.0874 -0.0022 24 6 6.5708 0.2958 -0.0083 25 8 2.3059 -1.0859 -0.0047 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.9779 2.1134 0.0005 30 1 8.4177 -1.9773 2.0651 31 1 9.8747 -1.6168 1.1079 32 1 8.4873 -0.5028 1.0705 33 1 8.7128 -3.8291 2.1458 34 1 7.1800 -4.3347 1.3952 35 1 8.6071 -5.3943 1.3044 36 1 10.6370 -6.9003 -0.0773 37 1 6.6899 0.6436 1.0178 38 1 7.5312 0.3433 -0.5216 39 1 5.8506 0.9297 -0.5255 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339100393.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:19 Heat of formation + Delta-G solvation = 134.282361 kcal Electronic energy + Delta-G solvation = -23319.558523 eV Core-core repulsion = 19880.977890 eV Total energy + Delta-G solvation = -3438.580633 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.48594 -42.53431 -37.50384 -35.26363 -34.52280 -33.13691 -32.63165 -30.16452 -28.80034 -27.82960 -26.90995 -25.26265 -25.22993 -23.20899 -22.50929 -21.50840 -20.77133 -19.57602 -17.57250 -17.07384 -16.64417 -16.05046 -15.99485 -15.49781 -15.12838 -14.70421 -14.46466 -13.91540 -13.61335 -13.47654 -13.44157 -13.14631 -12.82162 -12.66379 -12.42927 -11.65566 -11.58208 -11.51062 -11.24434 -10.95819 -10.85837 -10.78887 -10.73203 -10.36274 -10.13404 -9.95191 -9.93887 -9.69705 -8.97406 -8.67587 -8.43608 -7.44911 -6.07733 -4.15761 0.80109 1.84705 1.95567 2.62932 2.89574 3.28238 3.29409 3.33869 3.35163 3.55758 4.27317 4.46461 4.51004 4.70725 4.80267 4.94591 5.07253 5.17279 5.23810 5.23952 5.36965 5.45416 5.54980 5.66108 5.79382 5.91181 5.95039 5.99739 6.13827 6.35429 6.59575 6.80482 6.99432 7.12413 7.31647 7.44126 7.52188 7.67156 7.88866 8.20820 8.33617 8.83688 9.04151 9.48964 10.98647 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.042495 B = 0.003494 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.743731 B = 8012.282572 C = 8473.868978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.044 4.044 3 C -0.035 4.035 4 N -0.471 5.471 5 C 0.294 3.706 6 C 0.197 3.803 7 N -0.229 5.229 8 N -0.304 5.304 9 C 0.411 3.589 10 N -0.447 5.447 11 C 0.027 3.973 12 C 0.226 3.774 13 H 0.058 0.942 14 C -0.173 4.173 15 C -0.518 4.518 16 H 0.065 0.935 17 C 0.065 3.935 18 N -0.883 5.883 19 Si 0.901 3.099 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.276 1.276 23 N -0.466 5.466 24 C 0.078 3.922 25 O -0.174 6.174 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.189 0.811 30 H 0.039 0.961 31 H 0.100 0.900 32 H 0.053 0.947 33 H 0.024 0.976 34 H 0.037 0.963 35 H 0.094 0.906 36 H 0.264 0.736 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.252 15.435 1.811 21.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.099 4.099 3 C -0.176 4.176 4 N -0.203 5.203 5 C 0.089 3.911 6 C -0.067 4.067 7 N -0.076 5.076 8 N -0.153 5.153 9 C 0.056 3.944 10 N -0.169 5.169 11 C -0.120 4.120 12 C 0.123 3.877 13 H 0.076 0.924 14 C -0.233 4.233 15 C -0.557 4.557 16 H 0.083 0.917 17 C -0.138 4.138 18 N -0.521 5.521 19 Si 0.729 3.271 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.202 1.202 23 N -0.163 5.163 24 C -0.065 4.065 25 O -0.058 6.058 26 H 0.104 0.896 27 H 0.100 0.900 28 H 0.112 0.888 29 H 0.206 0.794 30 H 0.057 0.943 31 H 0.118 0.882 32 H 0.071 0.929 33 H 0.043 0.957 34 H 0.056 0.944 35 H 0.112 0.888 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.113 0.887 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.931 14.360 1.380 20.054 hybrid contribution 0.661 0.650 0.458 1.034 sum -13.270 15.010 1.838 20.118 Atomic orbital electron populations 1.20303 0.83550 1.04581 1.03999 1.23677 0.95203 0.84274 1.06755 1.23058 0.87332 1.00431 1.06770 1.70658 1.23269 1.07471 1.18917 1.21042 0.81193 0.86958 1.01943 1.19479 0.80839 0.90565 1.15779 1.74503 1.15040 1.04663 1.13358 1.75074 0.94154 1.21978 1.24110 1.23326 0.92391 0.81424 0.97215 1.59203 0.96262 1.21557 1.39926 1.22522 1.03062 0.95815 0.90606 1.19478 0.95372 0.76918 0.95958 0.92399 1.22435 0.98331 1.04975 0.97512 1.20964 0.89992 0.92902 1.51818 0.91728 1.24890 0.98641 0.95381 0.94882 1.69900 1.35536 0.97504 1.49113 0.86512 0.84871 0.77048 0.78672 1.20252 1.21217 1.20158 1.45787 1.04506 1.08659 1.57391 1.22247 1.02207 0.78146 1.03901 1.84560 1.16308 1.35784 1.69160 0.89566 0.90027 0.88797 0.79405 0.94269 0.88163 0.92874 0.95732 0.94407 0.88791 0.92579 0.90458 0.88674 0.88010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.43 36.01 0.38 -0.01 16 2 C -0.04 -0.47 7.38 -35.60 -0.26 -0.73 16 3 C -0.04 -0.37 11.79 -17.86 -0.21 -0.58 16 4 N -0.47 -6.54 9.50 -11.86 -0.11 -6.65 16 5 C 0.29 4.73 8.14 -14.10 -0.11 4.61 16 6 C 0.20 3.68 7.98 -153.68 -1.23 2.46 16 7 N -0.23 -4.95 12.24 32.50 0.40 -4.56 16 8 N -0.30 -7.07 9.28 30.28 0.28 -6.79 16 9 C 0.41 8.65 6.74 -319.11 -2.15 6.50 16 10 N -0.45 -9.57 4.79 -176.13 -0.84 -10.42 16 11 C 0.03 0.48 8.59 60.06 0.52 1.00 16 12 C 0.23 5.71 2.03 -68.86 -0.14 5.57 16 13 H 0.06 1.67 7.94 -51.93 -0.41 1.25 16 14 C -0.17 -4.31 8.26 37.16 0.31 -4.01 16 15 C -0.52 -13.60 7.88 -34.44 -0.27 -13.87 16 16 H 0.06 1.63 6.77 -52.49 -0.36 1.28 16 17 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 18 N -0.88 -24.83 11.32 55.43 0.63 -24.21 16 19 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 N -0.47 -8.27 3.23 -122.24 -0.40 -8.66 16 24 C 0.08 1.01 9.10 59.85 0.54 1.55 16 25 O -0.17 -2.59 10.81 3.63 0.04 -2.55 16 26 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.19 1.23 8.06 -52.49 -0.42 0.80 16 30 H 0.04 0.72 6.51 -51.93 -0.34 0.38 16 31 H 0.10 1.83 6.42 -51.93 -0.33 1.49 16 32 H 0.05 0.76 5.39 -51.93 -0.28 0.48 16 33 H 0.02 0.57 6.47 -51.93 -0.34 0.23 16 34 H 0.04 0.93 5.87 -51.93 -0.30 0.62 16 35 H 0.09 2.56 6.07 -51.93 -0.32 2.25 16 36 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.08 0.87 7.85 -51.93 -0.41 0.46 16 38 H 0.09 1.16 7.56 -51.93 -0.39 0.76 16 39 H 0.10 1.24 6.66 -51.93 -0.35 0.89 16 LS Contribution 319.94 15.07 4.82 4.82 Total: -1.00 -32.01 319.94 -7.58 -39.59 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -4.65 Total: -0.31 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -2.73 Total: 4.13 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: -0.05 Total: -61.28 kcal Atomic # 8 Polarization: -2.59 SS G_CDS: 0.04 Total: -2.55 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.01 -7.58 -39.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339100393.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.869 kcal (2) G-P(sol) polarization free energy of solvation -32.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds