Wall clock time and date at job start Tue Mar 31 2020 06:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34574 * 126.34370 * 2 1 4 4 N 1.34099 * 107.88537 * 180.02562 * 3 2 1 5 5 C 1.31472 * 108.63399 * 359.97438 * 4 3 2 6 6 C 1.47129 * 125.75914 * 179.97438 * 5 4 3 7 7 N 1.31498 * 126.49916 * 179.97438 * 6 5 4 8 8 N 1.28509 * 109.88813 * 180.02562 * 7 6 5 9 9 C 1.31545 * 110.11383 * 0.02562 * 8 7 6 10 10 N 1.38233 * 126.34673 * 180.02562 * 9 8 7 11 11 C 1.46898 * 111.00305 * 236.01991 * 10 9 8 12 12 C 1.46904 * 110.99979 * 359.97438 * 10 9 8 13 13 H 1.09000 * 109.47079 * 54.99346 * 12 10 9 14 14 C 1.53009 * 109.46869 * 294.99901 * 12 10 9 15 15 C 1.50699 * 109.47323 * 175.00140 * 12 10 9 16 16 H 1.08000 * 119.99876 * 359.97438 * 15 12 10 17 17 C 1.37880 * 120.00003 * 179.97438 * 15 12 10 18 18 N 1.31508 * 119.99944 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 119.99829 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.47185 * 60.00265 * 19 17 15 21 21 H 1.48504 * 109.46705 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47269 * 299.99958 * 19 17 15 23 23 N 1.36351 * 107.31074 * 359.97438 * 9 8 7 24 24 C 1.46501 * 127.15966 * 180.26338 * 23 9 8 25 25 O 1.34543 * 108.49027 * 0.22520 * 5 4 3 26 26 H 1.09006 * 109.47068 * 90.00053 * 1 2 3 27 27 H 1.08997 * 109.47715 * 210.00300 * 1 2 3 28 28 H 1.09001 * 109.47012 * 330.00341 * 1 2 3 29 29 H 1.07998 * 126.05541 * 0.03164 * 3 2 1 30 30 H 1.09001 * 109.47183 * 59.99771 * 11 10 9 31 31 H 1.08998 * 109.47050 * 180.02562 * 11 10 9 32 32 H 1.09000 * 109.46968 * 299.99840 * 11 10 9 33 33 H 1.09004 * 109.46560 * 300.00055 * 14 12 10 34 34 H 1.08996 * 109.46848 * 59.99672 * 14 12 10 35 35 H 1.08995 * 109.47098 * 179.97438 * 14 12 10 36 36 H 0.97001 * 120.00291 * 180.02562 * 18 17 15 37 37 H 1.08994 * 109.47196 * 269.71020 * 24 23 9 38 38 H 1.08997 * 109.47273 * 29.70990 * 24 23 9 39 39 H 1.09002 * 109.46853 * 149.70831 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3045 1.0840 0.0000 4 7 3.5765 0.6594 -0.0006 5 6 3.5805 -0.6553 -0.0004 6 6 4.7771 -1.5115 -0.0014 7 7 4.7981 -2.8263 -0.0007 8 7 6.0134 -3.2441 -0.0014 9 6 6.8428 -2.2230 -0.0020 10 7 8.2235 -2.2891 -0.0034 11 6 8.7872 -1.5489 1.1334 12 6 8.6838 -3.6841 -0.0035 13 1 8.2370 -4.2141 -0.8446 14 6 8.2659 -4.3591 1.3046 15 6 10.1852 -3.7178 -0.1287 16 1 10.7418 -2.7951 -0.2014 17 6 10.8483 -4.9265 -0.1505 18 7 10.1705 -6.0500 -0.0624 19 14 12.7093 -4.9681 -0.3065 20 1 13.3184 -4.2454 0.8389 21 1 13.1745 -6.3784 -0.3064 22 1 13.1144 -4.3138 -1.5765 23 7 6.0882 -1.0874 -0.0022 24 6 6.5708 0.2958 -0.0083 25 8 2.3059 -1.0859 -0.0047 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.9779 2.1134 0.0005 30 1 8.4177 -1.9773 2.0651 31 1 9.8747 -1.6168 1.1079 32 1 8.4873 -0.5028 1.0705 33 1 8.7128 -3.8291 2.1458 34 1 7.1800 -4.3347 1.3952 35 1 8.6071 -5.3943 1.3044 36 1 10.6370 -6.9003 -0.0773 37 1 6.6899 0.6436 1.0178 38 1 7.5312 0.3433 -0.5216 39 1 5.8506 0.9297 -0.5255 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339100393.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:16 Heat of formation + Delta-G solvation = 112.746130 kcal Electronic energy + Delta-G solvation = -23320.492404 eV Core-core repulsion = 19880.977890 eV Total energy + Delta-G solvation = -3439.514514 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -44.54505 -43.98902 -39.21977 -36.51249 -35.73751 -34.84391 -33.71944 -31.56275 -30.62715 -29.06481 -27.93759 -27.26015 -26.70135 -24.37211 -23.86139 -22.87958 -22.00835 -21.22145 -18.83783 -18.37970 -18.20552 -17.58672 -17.34686 -17.10184 -16.54871 -16.22630 -15.58138 -15.28652 -15.07733 -14.58739 -14.34895 -14.29689 -13.89923 -13.85177 -13.43426 -13.25830 -13.17788 -12.96124 -12.69896 -12.67055 -12.55027 -12.51989 -12.17355 -12.02507 -11.84666 -11.59537 -11.32906 -11.15250 -10.95667 -10.50469 -9.86724 -8.99007 -8.11653 -6.27136 -0.36925 0.61865 0.82285 1.37186 1.47325 1.49850 1.57157 1.75126 1.88986 2.41429 2.45772 2.92566 3.18523 3.59534 3.65056 3.89491 3.90478 4.08656 4.26528 4.31086 4.38328 4.46865 4.52222 4.62257 4.67187 4.70922 4.79840 4.94965 5.00290 5.04405 5.05770 5.08022 5.23554 5.24636 5.53423 5.57762 5.73611 5.94617 6.17881 6.40578 6.46265 6.81178 7.41157 7.50407 8.95031 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.042495 B = 0.003494 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.743731 B = 8012.282572 C = 8473.868978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.028 4.028 3 C -0.041 4.041 4 N -0.457 5.457 5 C 0.243 3.757 6 C 0.222 3.778 7 N -0.277 5.277 8 N -0.350 5.350 9 C 0.395 3.605 10 N -0.449 5.449 11 C 0.027 3.973 12 C 0.238 3.762 13 H 0.009 0.991 14 C -0.156 4.156 15 C -0.527 4.527 16 H 0.075 0.925 17 C 0.014 3.986 18 N -0.919 5.919 19 Si 0.970 3.030 20 H -0.264 1.264 21 H -0.289 1.289 22 H -0.271 1.271 23 N -0.457 5.457 24 C 0.070 3.930 25 O -0.196 6.196 26 H 0.104 0.896 27 H 0.081 0.919 28 H 0.129 0.871 29 H 0.233 0.767 30 H 0.030 0.970 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.034 0.966 34 H 0.032 0.968 35 H 0.066 0.934 36 H 0.263 0.737 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.118 19.139 2.157 24.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.082 4.082 3 C -0.182 4.182 4 N -0.190 5.190 5 C 0.039 3.961 6 C -0.044 4.044 7 N -0.121 5.121 8 N -0.197 5.197 9 C 0.039 3.961 10 N -0.172 5.172 11 C -0.119 4.119 12 C 0.133 3.867 13 H 0.027 0.973 14 C -0.215 4.215 15 C -0.565 4.565 16 H 0.093 0.907 17 C -0.186 4.186 18 N -0.557 5.557 19 Si 0.795 3.205 20 H -0.188 1.188 21 H -0.215 1.215 22 H -0.196 1.196 23 N -0.154 5.154 24 C -0.070 4.070 25 O -0.080 6.080 26 H 0.123 0.877 27 H 0.100 0.900 28 H 0.147 0.853 29 H 0.250 0.750 30 H 0.049 0.951 31 H 0.116 0.884 32 H 0.112 0.888 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.119 0.881 38 H 0.124 0.876 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -14.803 18.078 1.732 23.429 hybrid contribution 0.600 -0.283 0.338 0.745 sum -14.202 17.795 2.070 22.862 Atomic orbital electron populations 1.20659 0.79894 1.06339 1.05634 1.24821 0.96987 0.83281 1.03150 1.23824 0.85799 1.02349 1.06252 1.70611 1.25318 1.06213 1.16876 1.20674 0.80943 0.87358 1.07098 1.19927 0.82139 0.90199 1.12123 1.74389 1.14573 1.06610 1.16542 1.74908 0.95209 1.24053 1.25546 1.23152 0.92143 0.82320 0.98517 1.59113 0.96772 1.19548 1.41729 1.22637 1.02691 0.97553 0.89003 1.19041 0.94859 0.78926 0.93921 0.97268 1.22212 0.97916 1.03345 0.98064 1.21282 0.90518 0.93383 1.51318 0.90661 1.25782 1.03389 0.94960 0.94480 1.70069 1.37397 0.98060 1.50184 0.85425 0.79090 0.76898 0.79087 1.18819 1.21465 1.19576 1.45942 1.03743 1.09432 1.56274 1.22613 1.02931 0.75672 1.05791 1.84560 1.16421 1.37878 1.69145 0.87748 0.89974 0.85285 0.75045 0.95093 0.88384 0.88813 0.94672 0.94892 0.91556 0.92749 0.88067 0.87554 0.86894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.43 71.24 0.74 0.24 16 2 C -0.03 -0.51 7.38 24.85 0.18 -0.33 16 3 C -0.04 -0.70 11.79 83.51 0.98 0.28 16 4 N -0.46 -11.54 9.50 -305.33 -2.90 -14.44 16 5 C 0.24 7.65 8.14 87.08 0.71 8.36 16 6 C 0.22 8.46 7.98 135.86 1.08 9.55 16 7 N -0.28 -12.60 12.24 -51.08 -0.63 -13.23 16 8 N -0.35 -17.21 9.28 -58.11 -0.54 -17.75 16 9 C 0.39 17.11 6.74 260.19 1.75 18.86 16 10 N -0.45 -19.57 4.79 -711.15 -3.41 -22.98 16 11 C 0.03 0.95 8.59 127.69 1.10 2.04 16 12 C 0.24 12.51 2.03 44.17 0.09 12.60 16 13 H 0.01 0.58 7.94 -2.39 -0.02 0.56 16 14 C -0.16 -8.15 8.26 71.99 0.59 -7.56 16 15 C -0.53 -28.08 7.88 25.60 0.20 -27.87 16 16 H 0.08 3.77 6.77 -2.91 -0.02 3.75 16 17 C 0.01 0.74 5.30 84.66 0.45 1.18 16 18 N -0.92 -53.57 11.32 21.45 0.24 -53.33 16 19 Si 0.97 42.45 29.54 68.60 2.03 44.47 16 20 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 21 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 23 N -0.46 -16.14 3.23 -540.66 -1.75 -17.89 16 24 C 0.07 1.67 9.10 127.77 1.16 2.83 16 25 O -0.20 -5.68 10.81 -9.92 -0.11 -5.79 16 26 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16 27 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.13 0.11 8.14 -2.39 -0.02 0.09 16 29 H 0.23 1.70 8.06 -2.91 -0.02 1.68 16 30 H 0.03 1.11 6.51 -2.39 -0.02 1.10 16 31 H 0.10 3.45 6.42 -2.39 -0.02 3.44 16 32 H 0.09 2.45 5.39 -2.39 -0.01 2.44 16 33 H 0.03 1.69 6.47 -2.38 -0.02 1.67 16 34 H 0.03 1.71 5.87 -2.39 -0.01 1.70 16 35 H 0.07 3.82 6.07 -2.39 -0.01 3.80 16 36 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 37 H 0.10 1.95 7.85 -2.39 -0.02 1.93 16 38 H 0.11 2.31 7.56 -2.39 -0.02 2.30 16 39 H 0.11 2.46 6.66 -2.39 -0.02 2.45 16 Total: -1.00 -74.90 319.94 3.08 -71.82 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: 1.09 Total: 8.91 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: 9.05 Total: 20.19 kcal Atomic # 7 Polarization: -130.63 SS G_CDS: -8.98 Total: -139.61 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -0.11 Total: -5.79 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -74.90 3.08 -71.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339100393.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.562 kcal (2) G-P(sol) polarization free energy of solvation -74.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds