Wall clock time and date at job start Tue Mar 31 2020 06:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34575 * 126.34479 * 2 1 4 4 N 1.34107 * 107.88763 * 180.02562 * 3 2 1 5 5 C 1.31474 * 108.62857 * 0.02562 * 4 3 2 6 6 C 1.47128 * 125.74926 * 180.02562 * 5 4 3 7 7 N 1.31502 * 126.49451 * 179.97438 * 6 5 4 8 8 N 1.28514 * 109.88479 * 180.02562 * 7 6 5 9 9 C 1.31535 * 110.11139 * 359.97438 * 8 7 6 10 10 N 1.38242 * 126.33824 * 179.97438 * 9 8 7 11 11 C 1.46901 * 110.99778 * 236.07154 * 10 9 8 12 12 C 1.46901 * 110.99979 * 0.02562 * 10 9 8 13 13 H 1.08995 * 109.47673 * 299.99702 * 12 10 9 14 14 C 1.53002 * 109.46853 * 60.00673 * 12 10 9 15 15 C 1.50703 * 109.46817 * 179.97438 * 12 10 9 16 16 H 1.07998 * 120.00260 * 0.02562 * 15 12 10 17 17 C 1.37874 * 119.99872 * 180.02562 * 15 12 10 18 18 N 1.31513 * 120.00257 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 120.00090 * 180.02562 * 17 15 12 20 20 H 1.48498 * 109.47186 * 60.00065 * 19 17 15 21 21 H 1.48495 * 109.47276 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46947 * 300.00236 * 19 17 15 23 23 N 1.36347 * 107.31956 * 359.73861 * 9 8 7 24 24 C 1.46498 * 127.16631 * 180.27850 * 23 9 8 25 25 O 1.34545 * 108.49400 * 359.97438 * 5 4 3 26 26 H 1.08998 * 109.47557 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47101 * 299.99743 * 1 2 3 28 28 H 1.09008 * 109.47141 * 59.99408 * 1 2 3 29 29 H 1.08007 * 126.05654 * 0.02562 * 3 2 1 30 30 H 1.09002 * 109.47161 * 60.00676 * 11 10 9 31 31 H 1.09004 * 109.47151 * 180.02562 * 11 10 9 32 32 H 1.08993 * 109.47333 * 299.99950 * 11 10 9 33 33 H 1.08997 * 109.47013 * 179.97438 * 14 12 10 34 34 H 1.09002 * 109.46532 * 299.99388 * 14 12 10 35 35 H 1.08998 * 109.47510 * 59.99533 * 14 12 10 36 36 H 0.96993 * 120.00302 * 179.97438 * 18 17 15 37 37 H 1.08999 * 109.46935 * 270.18349 * 24 23 9 38 38 H 1.09000 * 109.46757 * 30.18088 * 24 23 9 39 39 H 1.08998 * 109.46933 * 150.17522 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3045 1.0840 0.0000 4 7 3.5766 0.6594 -0.0006 5 6 3.5805 -0.6554 -0.0015 6 6 4.7772 -1.5114 -0.0018 7 7 4.7982 -2.8262 -0.0022 8 7 6.0136 -3.2439 -0.0019 9 6 6.8427 -2.2229 -0.0017 10 7 8.2236 -2.2890 -0.0009 11 6 8.7853 -1.5491 1.1372 12 6 8.6838 -3.6840 -0.0007 13 1 8.3092 -4.1902 0.8890 14 6 8.1596 -4.3941 -1.2504 15 6 10.1905 -3.7158 -0.0003 16 1 10.7502 -2.7922 0.0001 17 6 10.8545 -4.9242 -0.0007 18 7 10.1731 -6.0490 -0.0017 19 14 12.7221 -4.9637 0.0005 20 1 13.2310 -4.2750 1.2137 21 1 13.1874 -6.3738 -0.0007 22 1 13.2325 -4.2735 -1.2113 23 7 6.0882 -1.0872 -0.0080 24 6 6.5708 0.2960 -0.0159 25 8 2.3059 -1.0860 -0.0009 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5140 -0.8900 29 1 1.9780 2.1135 0.0004 30 1 8.4143 -1.9780 2.0681 31 1 9.8729 -1.6171 1.1135 32 1 8.4855 -0.5031 1.0741 33 1 8.5014 -5.4291 -1.2505 34 1 7.0698 -4.3711 -1.2511 35 1 8.5343 -3.8880 -2.1401 36 1 10.6402 -6.8990 -0.0023 37 1 6.6938 0.6437 1.0098 38 1 7.5291 0.3434 -0.5331 39 1 5.8486 0.9298 -0.5304 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339100439.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:23 Heat of formation + Delta-G solvation = 135.618769 kcal Electronic energy + Delta-G solvation = -23295.177951 eV Core-core repulsion = 19856.655270 eV Total energy + Delta-G solvation = -3438.522682 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.48300 -42.53191 -37.31257 -35.26797 -34.53071 -33.14341 -32.65199 -30.11137 -29.31140 -27.80426 -26.91662 -25.47204 -24.38500 -23.21401 -22.53065 -21.55979 -20.77159 -19.63842 -17.55122 -17.08714 -16.73680 -16.20377 -15.93130 -15.35482 -15.11014 -14.71623 -14.41768 -14.00318 -13.66081 -13.48209 -13.39942 -13.12960 -12.85822 -12.67190 -12.41043 -11.93352 -11.62981 -11.39959 -11.04124 -10.98433 -10.81344 -10.63946 -10.60090 -10.29303 -10.09809 -10.04998 -9.89408 -9.69444 -9.03351 -8.60917 -8.42779 -7.44522 -6.07900 -4.16728 0.80312 1.85011 1.95555 2.62862 2.89682 3.27606 3.29018 3.33339 3.34479 3.56092 4.25599 4.47242 4.49826 4.71450 4.80182 4.94161 5.06544 5.17091 5.23476 5.23990 5.36980 5.45299 5.55062 5.66010 5.80378 5.90534 5.93976 6.00040 6.14026 6.35959 6.59783 6.95130 7.06547 7.27972 7.36976 7.43635 7.57362 7.68594 7.90968 8.23787 8.34638 8.82453 9.04863 9.48026 10.98109 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.042582 B = 0.003503 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.393254 B = 7990.322725 C = 8492.916591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.044 4.044 3 C -0.036 4.036 4 N -0.471 5.471 5 C 0.294 3.706 6 C 0.196 3.804 7 N -0.230 5.230 8 N -0.303 5.303 9 C 0.411 3.589 10 N -0.450 5.450 11 C 0.030 3.970 12 C 0.229 3.771 13 H 0.025 0.975 14 C -0.146 4.146 15 C -0.522 4.522 16 H 0.065 0.935 17 C 0.066 3.934 18 N -0.882 5.882 19 Si 0.901 3.099 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.276 1.276 23 N -0.466 5.466 24 C 0.078 3.922 25 O -0.174 6.174 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.189 0.811 30 H 0.033 0.967 31 H 0.102 0.898 32 H 0.054 0.946 33 H 0.089 0.911 34 H 0.045 0.955 35 H 0.025 0.975 36 H 0.264 0.736 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.299 15.404 1.104 21.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.099 4.099 3 C -0.176 4.176 4 N -0.203 5.203 5 C 0.088 3.912 6 C -0.067 4.067 7 N -0.076 5.076 8 N -0.152 5.152 9 C 0.057 3.943 10 N -0.174 5.174 11 C -0.117 4.117 12 C 0.125 3.875 13 H 0.043 0.957 14 C -0.204 4.204 15 C -0.560 4.560 16 H 0.083 0.917 17 C -0.138 4.138 18 N -0.519 5.519 19 Si 0.729 3.271 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.201 1.201 23 N -0.163 5.163 24 C -0.065 4.065 25 O -0.058 6.058 26 H 0.099 0.901 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.206 0.794 30 H 0.052 0.948 31 H 0.121 0.879 32 H 0.072 0.928 33 H 0.108 0.892 34 H 0.064 0.936 35 H 0.044 0.956 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.113 0.887 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.976 14.320 0.684 20.021 hybrid contribution 0.686 0.682 0.482 1.081 sum -13.289 15.002 1.166 20.075 Atomic orbital electron populations 1.20308 0.83558 1.04716 1.03898 1.23674 0.95202 0.84260 1.06774 1.23044 0.87339 1.00463 1.06777 1.70667 1.23257 1.07466 1.18916 1.21039 0.81194 0.86970 1.01955 1.19473 0.80832 0.90564 1.15818 1.74513 1.15067 1.04673 1.13362 1.75060 0.94153 1.21827 1.24185 1.23289 0.92334 0.81443 0.97251 1.58976 0.96402 1.21922 1.40056 1.22498 1.03330 0.95914 0.89940 1.19459 0.94950 0.76692 0.96359 0.95728 1.22011 0.98752 1.03205 0.96448 1.21002 0.89552 0.92864 1.52588 0.91663 1.24893 0.98675 0.95382 0.94806 1.69907 1.35429 0.97470 1.49104 0.86513 0.84902 0.77091 0.78611 1.20228 1.21184 1.20145 1.45790 1.04503 1.08649 1.57395 1.22245 1.02207 0.78155 1.03888 1.84567 1.16315 1.35789 1.69123 0.90055 0.89139 0.89133 0.79401 0.94799 0.87912 0.92765 0.89232 0.93644 0.95599 0.92562 0.90463 0.88700 0.87997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 10.43 36.00 0.38 -0.01 16 2 C -0.04 -0.47 7.38 -35.61 -0.26 -0.73 16 3 C -0.04 -0.37 11.79 -17.85 -0.21 -0.58 16 4 N -0.47 -6.54 9.49 -11.86 -0.11 -6.65 16 5 C 0.29 4.73 8.14 -14.10 -0.11 4.61 16 6 C 0.20 3.68 7.98 -153.67 -1.23 2.45 16 7 N -0.23 -4.97 12.24 32.50 0.40 -4.57 16 8 N -0.30 -7.06 8.97 30.28 0.27 -6.79 16 9 C 0.41 8.68 6.74 -319.11 -2.15 6.53 16 10 N -0.45 -9.70 4.68 -176.14 -0.82 -10.52 16 11 C 0.03 0.54 9.08 60.07 0.55 1.08 16 12 C 0.23 5.81 1.73 -68.86 -0.12 5.69 16 13 H 0.02 0.71 8.11 -51.93 -0.42 0.28 16 14 C -0.15 -3.78 8.77 37.16 0.33 -3.46 16 15 C -0.52 -13.71 7.88 -34.44 -0.27 -13.99 16 16 H 0.07 1.64 6.41 -52.49 -0.34 1.31 16 17 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 18 N -0.88 -24.88 11.32 55.43 0.63 -24.25 16 19 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 21 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 N -0.47 -8.28 3.23 -122.24 -0.40 -8.68 16 24 C 0.08 1.01 9.10 59.85 0.54 1.55 16 25 O -0.17 -2.59 10.81 3.63 0.04 -2.55 16 26 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.09 0.34 8.14 -51.92 -0.42 -0.08 16 29 H 0.19 1.23 8.06 -52.48 -0.42 0.81 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.10 1.87 6.10 -51.93 -0.32 1.55 16 32 H 0.05 0.77 5.41 -51.93 -0.28 0.49 16 33 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 34 H 0.04 1.16 5.42 -51.93 -0.28 0.88 16 35 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 37 H 0.08 0.87 7.83 -51.93 -0.41 0.46 16 38 H 0.09 1.16 7.60 -51.93 -0.39 0.76 16 39 H 0.10 1.24 6.65 -51.93 -0.35 0.90 16 LS Contribution 322.57 15.07 4.86 4.86 Total: -1.00 -32.26 322.57 -7.58 -39.84 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -4.77 Total: -1.10 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -2.66 Total: 4.83 kcal Atomic # 7 Polarization: -61.42 SS G_CDS: -0.03 Total: -61.46 kcal Atomic # 8 Polarization: -2.59 SS G_CDS: 0.04 Total: -2.55 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.26 -7.58 -39.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339100439.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.457 kcal (2) G-P(sol) polarization free energy of solvation -32.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds