Wall clock time and date at job start Tue Mar 31 2020 06:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34575 * 126.34479 * 2 1 4 4 N 1.34107 * 107.88763 * 180.02562 * 3 2 1 5 5 C 1.31474 * 108.62857 * 0.02562 * 4 3 2 6 6 C 1.47128 * 125.74926 * 180.02562 * 5 4 3 7 7 N 1.31502 * 126.49451 * 179.97438 * 6 5 4 8 8 N 1.28514 * 109.88479 * 180.02562 * 7 6 5 9 9 C 1.31535 * 110.11139 * 359.97438 * 8 7 6 10 10 N 1.38242 * 126.33824 * 179.97438 * 9 8 7 11 11 C 1.46901 * 110.99778 * 236.07154 * 10 9 8 12 12 C 1.46901 * 110.99979 * 0.02562 * 10 9 8 13 13 H 1.08995 * 109.47673 * 299.99702 * 12 10 9 14 14 C 1.53002 * 109.46853 * 60.00673 * 12 10 9 15 15 C 1.50703 * 109.46817 * 179.97438 * 12 10 9 16 16 H 1.07998 * 120.00260 * 0.02562 * 15 12 10 17 17 C 1.37874 * 119.99872 * 180.02562 * 15 12 10 18 18 N 1.31513 * 120.00257 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 120.00090 * 180.02562 * 17 15 12 20 20 H 1.48498 * 109.47186 * 60.00065 * 19 17 15 21 21 H 1.48495 * 109.47276 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46947 * 300.00236 * 19 17 15 23 23 N 1.36347 * 107.31956 * 359.73861 * 9 8 7 24 24 C 1.46498 * 127.16631 * 180.27850 * 23 9 8 25 25 O 1.34545 * 108.49400 * 359.97438 * 5 4 3 26 26 H 1.08998 * 109.47557 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47101 * 299.99743 * 1 2 3 28 28 H 1.09008 * 109.47141 * 59.99408 * 1 2 3 29 29 H 1.08007 * 126.05654 * 0.02562 * 3 2 1 30 30 H 1.09002 * 109.47161 * 60.00676 * 11 10 9 31 31 H 1.09004 * 109.47151 * 180.02562 * 11 10 9 32 32 H 1.08993 * 109.47333 * 299.99950 * 11 10 9 33 33 H 1.08997 * 109.47013 * 179.97438 * 14 12 10 34 34 H 1.09002 * 109.46532 * 299.99388 * 14 12 10 35 35 H 1.08998 * 109.47510 * 59.99533 * 14 12 10 36 36 H 0.96993 * 120.00302 * 179.97438 * 18 17 15 37 37 H 1.08999 * 109.46935 * 270.18349 * 24 23 9 38 38 H 1.09000 * 109.46757 * 30.18088 * 24 23 9 39 39 H 1.08998 * 109.46933 * 150.17522 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3045 1.0840 0.0000 4 7 3.5766 0.6594 -0.0006 5 6 3.5805 -0.6554 -0.0015 6 6 4.7772 -1.5114 -0.0018 7 7 4.7982 -2.8262 -0.0022 8 7 6.0136 -3.2439 -0.0019 9 6 6.8427 -2.2229 -0.0017 10 7 8.2236 -2.2890 -0.0009 11 6 8.7853 -1.5491 1.1372 12 6 8.6838 -3.6840 -0.0007 13 1 8.3092 -4.1902 0.8890 14 6 8.1596 -4.3941 -1.2504 15 6 10.1905 -3.7158 -0.0003 16 1 10.7502 -2.7922 0.0001 17 6 10.8545 -4.9242 -0.0007 18 7 10.1731 -6.0490 -0.0017 19 14 12.7221 -4.9637 0.0005 20 1 13.2310 -4.2750 1.2137 21 1 13.1874 -6.3738 -0.0007 22 1 13.2325 -4.2735 -1.2113 23 7 6.0882 -1.0872 -0.0080 24 6 6.5708 0.2960 -0.0159 25 8 2.3059 -1.0860 -0.0009 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5140 -0.8900 29 1 1.9780 2.1135 0.0004 30 1 8.4143 -1.9780 2.0681 31 1 9.8729 -1.6171 1.1135 32 1 8.4855 -0.5031 1.0741 33 1 8.5014 -5.4291 -1.2505 34 1 7.0698 -4.3711 -1.2511 35 1 8.5343 -3.8880 -2.1401 36 1 10.6402 -6.8990 -0.0023 37 1 6.6938 0.6437 1.0098 38 1 7.5291 0.3434 -0.5331 39 1 5.8486 0.9298 -0.5304 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339100439.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:21 Heat of formation + Delta-G solvation = 114.054090 kcal Electronic energy + Delta-G solvation = -23296.113066 eV Core-core repulsion = 19856.655270 eV Total energy + Delta-G solvation = -3439.457796 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -44.54511 -43.99298 -39.03368 -36.52942 -35.75035 -34.87707 -33.70887 -31.48050 -31.20309 -29.06513 -27.99405 -27.21979 -26.06696 -24.37978 -23.93963 -22.92029 -22.01774 -21.28390 -18.82267 -18.57372 -18.18288 -17.64187 -17.37534 -16.96028 -16.52807 -16.18607 -15.68184 -15.37429 -14.99970 -14.62683 -14.33846 -14.27143 -13.95296 -13.82662 -13.61248 -13.29228 -13.06778 -12.88251 -12.77455 -12.69010 -12.40937 -12.30618 -12.15195 -12.05399 -11.82340 -11.69366 -11.39044 -11.22578 -10.80635 -10.54196 -9.87383 -9.00416 -8.12298 -6.28545 -0.36936 0.61464 0.81812 1.36317 1.46779 1.49644 1.56919 1.74578 1.88432 2.40575 2.45661 2.89479 3.18371 3.59348 3.65032 3.89151 3.90599 4.07298 4.26210 4.30611 4.35931 4.44797 4.51945 4.61799 4.73520 4.78053 4.81985 4.86688 4.98066 5.05776 5.08685 5.19428 5.24839 5.34786 5.39593 5.63991 5.79388 5.90388 6.14399 6.40423 6.46232 6.79985 7.39937 7.49811 8.94269 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.042582 B = 0.003503 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.393254 B = 7990.322725 C = 8492.916591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.027 4.027 3 C -0.042 4.042 4 N -0.457 5.457 5 C 0.242 3.758 6 C 0.223 3.777 7 N -0.277 5.277 8 N -0.348 5.348 9 C 0.395 3.605 10 N -0.450 5.450 11 C 0.030 3.970 12 C 0.240 3.760 13 H -0.017 1.017 14 C -0.132 4.132 15 C -0.530 4.530 16 H 0.078 0.922 17 C 0.013 3.987 18 N -0.918 5.918 19 Si 0.971 3.029 20 H -0.264 1.264 21 H -0.289 1.289 22 H -0.269 1.269 23 N -0.457 5.457 24 C 0.070 3.930 25 O -0.195 6.195 26 H 0.078 0.922 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.233 0.767 30 H 0.022 0.978 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.043 0.957 35 H 0.023 0.977 36 H 0.264 0.736 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.217 19.118 1.211 24.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.082 4.082 3 C -0.183 4.183 4 N -0.190 5.190 5 C 0.039 3.961 6 C -0.043 4.043 7 N -0.121 5.121 8 N -0.196 5.196 9 C 0.038 3.962 10 N -0.174 5.174 11 C -0.116 4.116 12 C 0.135 3.865 13 H 0.000 1.000 14 C -0.191 4.191 15 C -0.569 4.569 16 H 0.096 0.904 17 C -0.186 4.186 18 N -0.557 5.557 19 Si 0.796 3.204 20 H -0.189 1.189 21 H -0.214 1.214 22 H -0.194 1.194 23 N -0.154 5.154 24 C -0.070 4.070 25 O -0.080 6.080 26 H 0.097 0.903 27 H 0.137 0.863 28 H 0.137 0.863 29 H 0.249 0.751 30 H 0.041 0.959 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.042 0.958 36 H 0.073 0.927 37 H 0.119 0.881 38 H 0.125 0.875 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -14.900 18.049 0.796 23.418 hybrid contribution 0.629 -0.250 0.469 0.824 sum -14.271 17.799 1.266 22.849 Atomic orbital electron populations 1.20664 0.79886 1.05473 1.06527 1.24822 0.96990 0.83265 1.03088 1.23801 0.85805 1.02368 1.06331 1.70619 1.25306 1.06208 1.16845 1.20663 0.80942 0.87366 1.07175 1.19923 0.82126 0.90198 1.12089 1.74400 1.14559 1.06612 1.16557 1.74878 0.95216 1.23897 1.25566 1.23114 0.92079 0.82365 0.98599 1.58923 0.96943 1.19756 1.41761 1.22620 1.02975 0.97681 0.88370 1.19050 0.94755 0.78739 0.93913 0.99980 1.21824 0.98575 1.01791 0.96863 1.21334 0.90038 0.93444 1.52048 0.90403 1.25805 1.03551 0.94949 0.94340 1.70073 1.37349 0.98049 1.50189 0.85411 0.78928 0.76943 0.79143 1.18890 1.21430 1.19380 1.45946 1.03746 1.09426 1.56233 1.22615 1.02962 0.75663 1.05778 1.84569 1.16419 1.37866 1.69111 0.90306 0.86290 0.86320 0.75077 0.95880 0.88114 0.88583 0.91722 0.93823 0.95822 0.92711 0.88098 0.87543 0.86843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.43 71.24 0.74 0.25 16 2 C -0.03 -0.49 7.38 24.85 0.18 -0.31 16 3 C -0.04 -0.71 11.79 83.51 0.98 0.27 16 4 N -0.46 -11.51 9.49 -305.31 -2.90 -14.41 16 5 C 0.24 7.62 8.14 87.08 0.71 8.32 16 6 C 0.22 8.48 7.98 135.86 1.08 9.56 16 7 N -0.28 -12.59 12.24 -51.08 -0.63 -13.22 16 8 N -0.35 -17.13 8.97 -58.12 -0.52 -17.65 16 9 C 0.39 17.14 6.74 260.20 1.75 18.89 16 10 N -0.45 -19.75 4.68 -711.17 -3.33 -23.08 16 11 C 0.03 1.05 9.08 127.69 1.16 2.21 16 12 C 0.24 12.75 1.73 44.17 0.08 12.83 16 13 H -0.02 -1.06 8.11 -2.39 -0.02 -1.08 16 14 C -0.13 -7.23 8.77 71.98 0.63 -6.59 16 15 C -0.53 -28.34 7.88 25.60 0.20 -28.14 16 16 H 0.08 3.88 6.41 -2.91 -0.02 3.86 16 17 C 0.01 0.73 5.30 84.65 0.45 1.17 16 18 N -0.92 -53.72 11.32 21.45 0.24 -53.48 16 19 Si 0.97 42.42 29.54 68.60 2.03 44.45 16 20 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 21 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 23 N -0.46 -16.14 3.23 -540.66 -1.75 -17.89 16 24 C 0.07 1.66 9.10 127.77 1.16 2.83 16 25 O -0.20 -5.66 10.81 -9.94 -0.11 -5.76 16 26 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.12 0.28 8.14 -2.39 -0.02 0.27 16 28 H 0.12 0.29 8.14 -2.38 -0.02 0.27 16 29 H 0.23 1.72 8.06 -2.91 -0.02 1.70 16 30 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.10 3.58 6.10 -2.38 -0.01 3.57 16 32 H 0.10 2.52 5.41 -2.39 -0.01 2.51 16 33 H 0.06 3.82 6.07 -2.39 -0.01 3.81 16 34 H 0.04 2.37 5.42 -2.39 -0.01 2.36 16 35 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.26 14.68 8.31 -92.71 -0.77 13.90 16 37 H 0.10 1.95 7.83 -2.39 -0.02 1.93 16 38 H 0.11 2.32 7.60 -2.39 -0.02 2.30 16 39 H 0.11 2.47 6.65 -2.39 -0.02 2.45 16 Total: -1.00 -75.29 322.57 3.26 -72.02 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: 1.08 Total: 7.74 kcal Atomic # 6 Polarization: 12.15 SS G_CDS: 9.14 Total: 21.29 kcal Atomic # 7 Polarization: -130.86 SS G_CDS: -8.88 Total: -139.73 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.11 Total: -5.76 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -75.29 3.26 -72.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339100439.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.076 kcal (2) G-P(sol) polarization free energy of solvation -75.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds