Wall clock time and date at job start Tue Mar 31 2020 08:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46837 * 88.12510 * 3 2 1 5 5 C 1.53005 * 109.46806 * 179.97438 * 4 3 2 6 6 C 1.50695 * 109.46838 * 179.97438 * 5 4 3 7 7 O 1.20758 * 120.00437 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99670 * 179.97438 * 6 5 4 9 9 H 1.08993 * 110.81986 * 31.65789 * 8 6 5 10 10 C 1.55238 * 110.89800 * 268.21024 * 8 6 5 11 11 C 1.54266 * 104.23333 * 203.79412 * 10 8 6 12 12 C 1.53869 * 106.59800 * 23.61579 * 11 10 8 13 13 C 1.54266 * 106.60031 * 359.97438 * 12 11 10 14 14 H 1.09002 * 110.48629 * 95.07240 * 13 12 11 15 15 C 1.50696 * 110.48718 * 217.58242 * 13 12 11 16 16 O 1.20766 * 119.99852 * 91.75519 * 15 13 12 17 17 C 1.50696 * 120.00357 * 271.75646 * 15 13 12 18 18 C 1.52995 * 109.47674 * 180.02562 * 17 15 13 19 19 C 1.50701 * 109.47567 * 180.02562 * 18 17 15 20 20 H 1.08003 * 119.99675 * 359.97438 * 19 18 17 21 21 C 1.37876 * 120.00279 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99847 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00074 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47113 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47067 * 119.99870 * 23 21 19 26 26 H 1.48498 * 109.47205 * 240.00008 * 23 21 19 27 27 H 1.08998 * 109.47714 * 328.12065 * 3 2 1 28 28 H 1.09001 * 109.46642 * 208.11825 * 3 2 1 29 29 H 1.08997 * 109.47091 * 60.00062 * 4 3 2 30 30 H 1.09001 * 109.46945 * 299.99129 * 4 3 2 31 31 H 1.08999 * 109.47218 * 59.99275 * 5 4 3 32 32 H 1.09001 * 109.46770 * 299.99374 * 5 4 3 33 33 H 1.09005 * 110.46917 * 85.10442 * 10 8 6 34 34 H 1.09007 * 110.58541 * 322.54362 * 10 8 6 35 35 H 1.08999 * 110.03060 * 264.32313 * 11 10 8 36 36 H 1.09003 * 110.02805 * 142.89578 * 11 10 8 37 37 H 1.09001 * 110.02983 * 240.71432 * 12 11 10 38 38 H 1.08996 * 110.07773 * 119.30576 * 12 11 10 39 39 H 1.09000 * 109.47224 * 300.00029 * 17 15 13 40 40 H 1.09004 * 109.46949 * 59.99803 * 17 15 13 41 41 H 1.08999 * 109.47199 * 300.00041 * 18 17 15 42 42 H 1.09004 * 109.47213 * 59.99819 * 18 17 15 43 43 H 0.96996 * 119.99813 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1180 -0.0463 -1.4418 5 6 4.6480 -0.0450 -1.4418 6 6 5.1503 -0.0919 -2.8618 7 8 4.3656 -0.1236 -3.7791 8 6 6.6320 -0.0992 -3.1370 9 1 7.1720 -0.6067 -2.3378 10 6 7.1662 1.3454 -3.3312 11 6 8.4467 1.1663 -4.1726 12 6 8.2982 -0.1704 -4.9201 13 6 6.9328 -0.7574 -4.5063 14 1 6.1665 -0.4903 -5.2339 15 6 7.0239 -2.2548 -4.3635 16 8 7.2866 -2.7443 -3.2912 17 6 6.7871 -3.1415 -5.5588 18 6 6.9378 -4.6066 -5.1449 19 6 6.7017 -5.4933 -6.3404 20 1 6.4671 -5.0555 -7.2994 21 6 6.7851 -6.8633 -6.2098 22 7 7.0712 -7.3964 -5.0421 23 14 6.4916 -7.9623 -7.6915 24 1 6.1897 -7.1227 -8.8786 25 1 7.7078 -8.7726 -7.9554 26 1 5.3448 -8.8653 -7.4187 27 1 2.9719 -0.8718 0.5427 28 1 2.9709 0.9072 0.4844 29 1 2.7543 0.8262 -1.9844 30 1 2.7551 -0.9529 -1.9261 31 1 5.0121 -0.9172 -0.8989 32 1 5.0105 0.8618 -0.9576 33 1 7.4029 1.7970 -2.3677 34 1 6.4388 1.9541 -3.8683 35 1 9.3202 1.1350 -3.5213 36 1 8.5419 1.9846 -4.8864 37 1 9.0995 -0.8506 -4.6315 38 1 8.3216 -0.0018 -5.9966 39 1 5.7803 -2.9742 -5.9416 40 1 7.5148 -2.9062 -6.3355 41 1 7.9444 -4.7743 -4.7619 42 1 6.2098 -4.8416 -4.3684 43 1 7.1303 -8.3602 -4.9503 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345612391.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:42:59 Heat of formation + Delta-G solvation = -88.335888 kcal Electronic energy + Delta-G solvation = -22631.206780 eV Core-core repulsion = 19254.220288 eV Total energy + Delta-G solvation = -3376.986492 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 5.34 seconds Orbital eigenvalues (eV) -40.55388 -38.86694 -37.22571 -36.74640 -34.56888 -33.49598 -31.21735 -30.40615 -29.44961 -28.49294 -25.79142 -23.83133 -22.35308 -21.07306 -20.54170 -19.37855 -18.69841 -17.89798 -16.80418 -16.36570 -16.23427 -15.74582 -15.10443 -14.76931 -14.53291 -14.49276 -14.42771 -14.14050 -13.63599 -13.34078 -13.20397 -12.97064 -12.69641 -12.48442 -12.20708 -12.03415 -11.95892 -11.87068 -11.73976 -11.38378 -11.13044 -11.09384 -11.04109 -10.93973 -10.87592 -10.61745 -10.56412 -9.96710 -9.73867 -9.58114 -9.14265 -8.72645 -8.34109 -5.97825 -4.01595 1.86652 2.49212 2.50729 2.54416 3.32078 3.39382 3.43130 3.57594 3.89120 4.27590 4.32017 4.46094 4.54659 4.60480 4.72343 4.79005 4.89722 5.06545 5.12299 5.22325 5.28562 5.31446 5.37488 5.40115 5.43557 5.47309 5.56219 5.68638 5.72410 5.80999 5.88571 5.94224 6.02779 6.10791 6.17873 6.27868 6.37186 6.97535 7.31437 7.42847 7.70962 7.81491 8.03112 8.08118 8.42170 9.06295 9.62331 11.13211 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011478 B = 0.003699 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.952256 B = 7567.431399 C = 9450.700112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.207 3.793 3 C -0.026 4.026 4 C -0.111 4.111 5 C -0.170 4.170 6 C 0.366 3.634 7 O -0.447 6.447 8 C -0.137 4.137 9 H 0.115 0.885 10 C -0.105 4.105 11 C -0.120 4.120 12 C -0.109 4.109 13 C -0.138 4.138 14 H 0.109 0.891 15 C 0.359 3.641 16 O -0.453 6.453 17 C -0.162 4.162 18 C 0.032 3.968 19 C -0.525 4.525 20 H 0.056 0.944 21 C 0.057 3.943 22 N -0.891 5.891 23 Si 0.892 3.108 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.284 1.284 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.021 0.979 42 H 0.020 0.980 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.064 21.269 8.162 22.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.111 4.111 3 C -0.066 4.066 4 C -0.150 4.150 5 C -0.208 4.208 6 C 0.240 3.760 7 O -0.320 6.320 8 C -0.156 4.156 9 H 0.133 0.867 10 C -0.143 4.143 11 C -0.158 4.158 12 C -0.146 4.146 13 C -0.157 4.157 14 H 0.127 0.873 15 C 0.235 3.765 16 O -0.326 6.326 17 C -0.199 4.199 18 C -0.005 4.005 19 C -0.563 4.563 20 H 0.075 0.925 21 C -0.144 4.144 22 N -0.530 5.530 23 Si 0.720 3.280 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.210 1.210 27 H 0.130 0.870 28 H 0.127 0.873 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.126 0.874 32 H 0.121 0.879 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.039 0.961 42 H 0.039 0.961 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.900 20.820 8.333 22.444 hybrid contribution 0.345 -0.755 -0.804 1.156 sum -0.555 20.065 7.529 21.439 Atomic orbital electron populations 1.81243 1.13203 1.08878 1.08367 1.29230 0.95378 0.93191 0.93303 1.19347 0.81599 1.05903 0.99773 1.21378 0.94535 1.04851 0.94230 1.22119 0.96235 1.05425 0.96997 1.24400 0.90801 0.70126 0.90651 1.90404 1.58723 1.35100 1.47755 1.22759 0.94913 0.98153 0.99808 0.86720 1.22319 0.97445 0.93966 1.00567 1.22108 0.97602 0.97344 0.98708 1.22007 0.95431 0.96359 1.00847 1.22656 0.99986 0.95445 0.97586 0.87334 1.24886 0.70753 0.90317 0.90578 1.90327 1.34784 1.77617 1.29892 1.22224 1.02545 0.99089 0.96056 1.18934 0.98027 0.86929 0.96648 1.21273 1.48076 0.91328 0.95628 0.92547 1.25030 0.95295 0.98292 0.95815 1.69998 1.48717 1.11253 1.23051 0.86543 0.77808 0.80684 0.83006 1.19707 1.21011 1.20994 0.87005 0.87250 0.90469 0.90128 0.87415 0.87872 0.90741 0.91153 0.91291 0.91298 0.91090 0.90630 0.89742 0.89779 0.96088 0.96147 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.66 18.54 42.15 0.78 -4.88 16 2 C 0.21 1.90 15.43 -20.76 -0.32 1.58 16 3 C -0.03 -0.12 5.70 -29.52 -0.17 -0.29 16 4 C -0.11 -0.79 4.46 -26.73 -0.12 -0.91 16 5 C -0.17 -1.13 5.64 -27.88 -0.16 -1.29 16 6 C 0.37 3.93 6.34 -29.04 -0.18 3.74 16 7 O -0.45 -6.31 15.46 6.00 0.09 -6.21 16 8 C -0.14 -1.45 2.49 -89.60 -0.22 -1.67 16 9 H 0.11 1.25 7.26 -51.93 -0.38 0.87 16 10 C -0.11 -0.81 6.28 -24.88 -0.16 -0.97 16 11 C -0.12 -0.97 6.80 -25.62 -0.17 -1.14 16 12 C -0.11 -1.16 6.36 -25.62 -0.16 -1.32 16 13 C -0.14 -1.79 2.48 -90.12 -0.22 -2.01 16 14 H 0.11 1.44 7.24 -51.93 -0.38 1.06 16 15 C 0.36 6.38 6.19 -29.04 -0.18 6.20 16 16 O -0.45 -9.28 15.43 5.99 0.09 -9.18 16 17 C -0.16 -3.28 5.57 -27.89 -0.16 -3.44 16 18 C 0.03 0.84 4.26 -27.88 -0.12 0.72 16 19 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16 20 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 22 N -0.89 -27.33 13.29 55.43 0.74 -26.59 16 23 Si 0.89 21.79 29.54 -169.99 -5.02 16.76 16 24 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 27 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 30 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 31 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.54 8.05 -51.93 -0.42 0.13 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.83 7.83 -51.93 -0.41 0.42 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 40 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 41 H 0.02 0.60 8.10 -51.93 -0.42 0.18 16 42 H 0.02 0.59 8.10 -51.93 -0.42 0.17 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 366.41 15.07 5.52 5.52 Total: -1.00 -36.22 366.41 -7.58 -43.80 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -7.03 Total: -4.69 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -2.76 Total: -14.53 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: 1.52 Total: -31.47 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: 0.19 Total: -15.40 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.22 -7.58 -43.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345612391.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.537 kcal (2) G-P(sol) polarization free energy of solvation -36.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.34 seconds