Wall clock time and date at job start Tue Mar 31 2020 08:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46837 * 88.12510 * 3 2 1 5 5 C 1.53005 * 109.46806 * 179.97438 * 4 3 2 6 6 C 1.50695 * 109.46838 * 179.97438 * 5 4 3 7 7 O 1.20758 * 120.00437 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99670 * 179.97438 * 6 5 4 9 9 H 1.08993 * 110.81986 * 31.65789 * 8 6 5 10 10 C 1.55238 * 110.89800 * 268.21024 * 8 6 5 11 11 C 1.54266 * 104.23333 * 203.79412 * 10 8 6 12 12 C 1.53869 * 106.59800 * 23.61579 * 11 10 8 13 13 C 1.54266 * 106.60031 * 359.97438 * 12 11 10 14 14 H 1.09002 * 110.48629 * 95.07240 * 13 12 11 15 15 C 1.50696 * 110.48718 * 217.58242 * 13 12 11 16 16 O 1.20766 * 119.99852 * 91.75519 * 15 13 12 17 17 C 1.50696 * 120.00357 * 271.75646 * 15 13 12 18 18 C 1.52995 * 109.47674 * 180.02562 * 17 15 13 19 19 C 1.50701 * 109.47567 * 180.02562 * 18 17 15 20 20 H 1.08003 * 119.99675 * 359.97438 * 19 18 17 21 21 C 1.37876 * 120.00279 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99847 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00074 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47113 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47067 * 119.99870 * 23 21 19 26 26 H 1.48498 * 109.47205 * 240.00008 * 23 21 19 27 27 H 1.08998 * 109.47714 * 328.12065 * 3 2 1 28 28 H 1.09001 * 109.46642 * 208.11825 * 3 2 1 29 29 H 1.08997 * 109.47091 * 60.00062 * 4 3 2 30 30 H 1.09001 * 109.46945 * 299.99129 * 4 3 2 31 31 H 1.08999 * 109.47218 * 59.99275 * 5 4 3 32 32 H 1.09001 * 109.46770 * 299.99374 * 5 4 3 33 33 H 1.09005 * 110.46917 * 85.10442 * 10 8 6 34 34 H 1.09007 * 110.58541 * 322.54362 * 10 8 6 35 35 H 1.08999 * 110.03060 * 264.32313 * 11 10 8 36 36 H 1.09003 * 110.02805 * 142.89578 * 11 10 8 37 37 H 1.09001 * 110.02983 * 240.71432 * 12 11 10 38 38 H 1.08996 * 110.07773 * 119.30576 * 12 11 10 39 39 H 1.09000 * 109.47224 * 300.00029 * 17 15 13 40 40 H 1.09004 * 109.46949 * 59.99803 * 17 15 13 41 41 H 1.08999 * 109.47199 * 300.00041 * 18 17 15 42 42 H 1.09004 * 109.47213 * 59.99819 * 18 17 15 43 43 H 0.96996 * 119.99813 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1180 -0.0463 -1.4418 5 6 4.6480 -0.0450 -1.4418 6 6 5.1503 -0.0919 -2.8618 7 8 4.3656 -0.1236 -3.7791 8 6 6.6320 -0.0992 -3.1370 9 1 7.1720 -0.6067 -2.3378 10 6 7.1662 1.3454 -3.3312 11 6 8.4467 1.1663 -4.1726 12 6 8.2982 -0.1704 -4.9201 13 6 6.9328 -0.7574 -4.5063 14 1 6.1665 -0.4903 -5.2339 15 6 7.0239 -2.2548 -4.3635 16 8 7.2866 -2.7443 -3.2912 17 6 6.7871 -3.1415 -5.5588 18 6 6.9378 -4.6066 -5.1449 19 6 6.7017 -5.4933 -6.3404 20 1 6.4671 -5.0555 -7.2994 21 6 6.7851 -6.8633 -6.2098 22 7 7.0712 -7.3964 -5.0421 23 14 6.4916 -7.9623 -7.6915 24 1 6.1897 -7.1227 -8.8786 25 1 7.7078 -8.7726 -7.9554 26 1 5.3448 -8.8653 -7.4187 27 1 2.9719 -0.8718 0.5427 28 1 2.9709 0.9072 0.4844 29 1 2.7543 0.8262 -1.9844 30 1 2.7551 -0.9529 -1.9261 31 1 5.0121 -0.9172 -0.8989 32 1 5.0105 0.8618 -0.9576 33 1 7.4029 1.7970 -2.3677 34 1 6.4388 1.9541 -3.8683 35 1 9.3202 1.1350 -3.5213 36 1 8.5419 1.9846 -4.8864 37 1 9.0995 -0.8506 -4.6315 38 1 8.3216 -0.0018 -5.9966 39 1 5.7803 -2.9742 -5.9416 40 1 7.5148 -2.9062 -6.3355 41 1 7.9444 -4.7743 -4.7619 42 1 6.2098 -4.8416 -4.3684 43 1 7.1303 -8.3602 -4.9503 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345612391.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:42:50 Heat of formation + Delta-G solvation = -109.956888 kcal Electronic energy + Delta-G solvation = -22632.144337 eV Core-core repulsion = 19254.220288 eV Total energy + Delta-G solvation = -3377.924049 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.56315 -40.08043 -38.00900 -37.67339 -35.61890 -35.21855 -33.13550 -31.16727 -30.56745 -29.11764 -27.67488 -24.78672 -23.80269 -21.95132 -21.62812 -20.29278 -19.94626 -18.74456 -18.48246 -17.45099 -17.01293 -16.77623 -16.46606 -16.15616 -16.04148 -15.66046 -15.43634 -14.89552 -14.57483 -14.33674 -14.33170 -14.12070 -14.01023 -13.70504 -13.39332 -13.23425 -13.02046 -12.87536 -12.57786 -12.51649 -12.48224 -12.29940 -12.07186 -11.96425 -11.93069 -11.72939 -11.67554 -11.57711 -11.34818 -11.27243 -10.60704 -10.39369 -10.26613 -8.22065 -6.35608 1.05844 1.08103 1.38898 1.39935 1.53391 1.78081 1.84980 2.38612 2.92388 3.10541 3.12473 3.28287 3.47596 3.72605 4.05677 4.13648 4.15994 4.27045 4.38903 4.45525 4.49648 4.52161 4.57270 4.59242 4.64310 4.69737 4.74064 4.81570 4.86388 4.95949 5.08007 5.10680 5.19308 5.21844 5.25318 5.34302 5.35598 5.44177 5.49363 5.58724 5.79987 6.15111 6.64089 6.64392 6.65515 6.83438 7.34414 8.90311 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011478 B = 0.003699 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.952256 B = 7567.431399 C = 9450.700112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C 0.233 3.767 3 C -0.018 4.018 4 C -0.109 4.109 5 C -0.164 4.164 6 C 0.359 3.641 7 O -0.491 6.491 8 C -0.140 4.140 9 H 0.113 0.887 10 C -0.096 4.096 11 C -0.116 4.116 12 C -0.110 4.110 13 C -0.132 4.132 14 H 0.107 0.893 15 C 0.363 3.637 16 O -0.487 6.487 17 C -0.160 4.160 18 C 0.039 3.961 19 C -0.546 4.546 20 H 0.068 0.932 21 C -0.004 4.004 22 N -0.934 5.934 23 Si 0.971 3.029 24 H -0.257 1.257 25 H -0.276 1.276 26 H -0.279 1.279 27 H 0.136 0.864 28 H 0.154 0.846 29 H 0.070 0.930 30 H 0.046 0.954 31 H 0.118 0.882 32 H 0.150 0.850 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.056 0.944 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.104 0.896 41 H -0.013 1.013 42 H -0.019 1.019 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.167 23.485 8.118 24.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.193 5.193 2 C -0.083 4.083 3 C -0.057 4.057 4 C -0.148 4.148 5 C -0.201 4.201 6 C 0.237 3.763 7 O -0.367 6.367 8 C -0.159 4.159 9 H 0.131 0.869 10 C -0.133 4.133 11 C -0.153 4.153 12 C -0.148 4.148 13 C -0.151 4.151 14 H 0.125 0.875 15 C 0.240 3.760 16 O -0.363 6.363 17 C -0.197 4.197 18 C 0.002 3.998 19 C -0.584 4.584 20 H 0.086 0.914 21 C -0.202 4.202 22 N -0.574 5.574 23 Si 0.795 3.205 24 H -0.181 1.181 25 H -0.202 1.202 26 H -0.205 1.205 27 H 0.154 0.846 28 H 0.171 0.829 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.136 0.864 32 H 0.168 0.832 33 H 0.125 0.875 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.075 0.925 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.122 0.878 41 H 0.005 0.995 42 H 0.000 1.000 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.215 23.061 8.285 24.505 hybrid contribution 0.067 -1.489 -0.795 1.690 sum 0.282 21.572 7.490 22.837 Atomic orbital electron populations 1.81260 1.15662 1.11628 1.10764 1.30101 0.96205 0.90910 0.91122 1.19645 0.78376 1.09135 0.98578 1.21297 0.95172 1.02904 0.95463 1.22181 0.95429 1.08051 0.94437 1.25022 0.90651 0.68441 0.92163 1.90400 1.59549 1.37410 1.49366 1.22862 0.95218 0.99960 0.97876 0.86855 1.22346 0.96942 0.91752 1.02281 1.22126 0.98250 0.95896 0.99045 1.22085 0.93101 0.97573 1.02013 1.22577 1.01576 0.91251 0.99742 0.87537 1.25104 0.69357 0.92686 0.88824 1.90313 1.36540 1.78770 1.30640 1.22129 1.03650 0.95812 0.98152 1.18726 0.94685 0.91207 0.95207 1.21737 1.47996 0.92167 0.96479 0.91354 1.26090 0.94723 1.00174 0.99210 1.70151 1.49697 1.11850 1.25711 0.85317 0.77848 0.78341 0.79043 1.18079 1.20196 1.20526 0.84628 0.82878 0.91172 0.93538 0.86429 0.83242 0.87529 0.90875 0.90222 0.89533 0.92547 0.89621 0.89032 0.87838 0.99452 1.00037 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -13.52 18.54 20.01 0.37 -13.15 16 2 C 0.23 4.08 15.43 89.44 1.38 5.46 16 3 C -0.02 -0.12 5.70 28.79 0.16 0.05 16 4 C -0.11 -1.39 4.46 30.60 0.14 -1.25 16 5 C -0.16 -1.71 5.64 29.85 0.17 -1.54 16 6 C 0.36 7.23 6.34 29.10 0.18 7.41 16 7 O -0.49 -13.87 15.46 -1.45 -0.02 -13.89 16 8 C -0.14 -2.70 2.49 -10.13 -0.03 -2.72 16 9 H 0.11 2.26 7.26 -2.39 -0.02 2.24 16 10 C -0.10 -1.12 6.28 31.79 0.20 -0.92 16 11 C -0.12 -1.47 6.80 31.32 0.21 -1.26 16 12 C -0.11 -2.16 6.36 31.32 0.20 -1.96 16 13 C -0.13 -3.35 2.48 -10.47 -0.03 -3.38 16 14 H 0.11 2.77 7.24 -2.39 -0.02 2.76 16 15 C 0.36 13.21 6.19 29.10 0.18 13.39 16 16 O -0.49 -20.76 15.43 -1.47 -0.02 -20.78 16 17 C -0.16 -6.70 5.57 29.85 0.17 -6.53 16 18 C 0.04 2.18 4.26 29.85 0.13 2.31 16 19 C -0.55 -31.86 9.11 25.60 0.23 -31.63 16 20 H 0.07 3.73 7.74 -2.91 -0.02 3.71 16 21 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 22 N -0.93 -59.05 13.29 21.45 0.28 -58.77 16 23 Si 0.97 45.02 29.54 68.60 2.03 47.04 16 24 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 25 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 26 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 27 H 0.14 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.15 -0.22 8.14 -2.39 -0.02 -0.24 16 29 H 0.07 0.99 8.10 -2.39 -0.02 0.97 16 30 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16 31 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.15 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.11 0.63 8.14 -2.38 -0.02 0.61 16 34 H 0.07 0.86 8.05 -2.38 -0.02 0.84 16 35 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.06 1.28 7.83 -2.39 -0.02 1.26 16 38 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.09 3.68 8.14 -2.39 -0.02 3.66 16 40 H 0.10 3.88 8.14 -2.38 -0.02 3.86 16 41 H -0.01 -0.80 8.10 -2.39 -0.02 -0.82 16 42 H -0.02 -1.18 8.10 -2.38 -0.02 -1.20 16 43 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -85.45 366.41 7.38 -78.07 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: 0.98 Total: 3.86 kcal Atomic # 6 Polarization: -26.14 SS G_CDS: 3.76 Total: -22.37 kcal Atomic # 7 Polarization: -72.58 SS G_CDS: 0.66 Total: -71.92 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -0.05 Total: -34.67 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -85.45 7.38 -78.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345612391.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.890 kcal (2) G-P(sol) polarization free energy of solvation -85.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds