Wall clock time and date at job start Tue Mar 31 2020 08:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86791 * 119.99843 * 2 1 4 4 H 1.48500 * 109.46958 * 269.99627 * 3 2 1 5 5 H 1.48499 * 109.47612 * 29.99346 * 3 2 1 6 6 H 1.48503 * 109.47383 * 150.00054 * 3 2 1 7 7 C 1.37873 * 119.99932 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00086 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00174 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47427 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47427 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99905 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99922 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99900 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47405 * 179.97438 * 14 13 11 16 16 C 1.52995 * 109.47181 * 180.02562 * 15 14 13 17 17 C 1.53001 * 109.47181 * 180.02562 * 16 15 14 18 18 O 1.42902 * 109.47386 * 180.02562 * 17 16 15 19 19 C 1.35898 * 116.99694 * 180.02562 * 18 17 16 20 20 C 1.38735 * 120.05254 * 179.97438 * 19 18 17 21 21 C 1.38144 * 119.94607 * 179.97438 * 20 19 18 22 22 C 1.38266 * 120.05233 * 0.02562 * 21 20 19 23 23 C 1.38269 * 120.11595 * 359.95530 * 22 21 20 24 24 C 1.38142 * 120.04935 * 0.04230 * 23 22 21 25 25 H 0.96999 * 119.99987 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47374 * 59.99635 * 9 7 2 27 27 H 1.09001 * 109.47419 * 299.99877 * 9 7 2 28 28 H 1.08999 * 109.46920 * 59.99629 * 10 9 7 29 29 H 1.08998 * 109.47220 * 299.99999 * 10 9 7 30 30 H 0.96996 * 120.00132 * 0.02562 * 13 11 10 31 31 H 1.09004 * 109.47175 * 59.99474 * 14 13 11 32 32 H 1.09009 * 109.47434 * 299.99903 * 14 13 11 33 33 H 1.08999 * 109.46920 * 59.99821 * 15 14 13 34 34 H 1.08993 * 109.46801 * 300.00004 * 15 14 13 35 35 H 1.08999 * 109.47370 * 60.00060 * 16 15 14 36 36 H 1.09006 * 109.47017 * 299.99902 * 16 15 14 37 37 H 1.08999 * 109.46920 * 59.99785 * 17 16 15 38 38 H 1.08998 * 109.47220 * 300.00155 * 17 16 15 39 39 H 1.08002 * 120.02704 * 359.70561 * 20 19 18 40 40 H 1.08001 * 119.97447 * 179.97438 * 21 20 19 41 41 H 1.08000 * 119.94089 * 179.97438 * 22 21 20 42 42 H 1.07992 * 119.97577 * 180.02562 * 23 22 21 43 43 H 1.08005 * 120.02748 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4918 -4.9672 -0.0001 12 8 0.2789 -4.9672 0.0000 13 7 2.1657 -6.1344 0.0003 14 6 1.4332 -7.4031 0.0003 15 6 2.4274 -8.5661 0.0001 16 6 1.6624 -9.8910 -0.0006 17 6 2.6566 -11.0540 0.0000 18 8 1.9421 -12.2916 -0.0013 19 6 2.6823 -13.4313 -0.0005 20 6 2.0537 -14.6680 -0.0011 21 6 2.8083 -15.8251 -0.0008 22 6 4.1890 -15.7514 0.0006 23 6 4.8180 -14.5200 0.0008 24 6 4.0678 -13.3601 0.0005 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 2.8719 -3.6043 0.8905 29 1 2.8719 -3.6044 -0.8894 30 1 3.1356 -6.1344 0.0014 31 1 0.8067 -7.4610 -0.8899 32 1 0.8062 -7.4608 0.8901 33 1 3.0541 -8.5084 0.8901 34 1 3.0539 -8.5083 -0.8898 35 1 1.0360 -9.9485 -0.8907 36 1 1.0355 -9.9491 0.8893 37 1 3.2826 -10.9963 0.8904 38 1 3.2839 -10.9962 -0.8896 39 1 0.9752 -14.7261 0.0026 40 1 2.3194 -16.7882 -0.0008 41 1 4.7772 -16.6572 0.0013 42 1 5.8965 -14.4651 0.0015 43 1 4.5594 -12.3984 0.0011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347442001.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:49 Heat of formation + Delta-G solvation = -78.406035 kcal Electronic energy + Delta-G solvation = -21028.419132 eV Core-core repulsion = 17651.863231 eV Total energy + Delta-G solvation = -3376.555901 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -40.48641 -39.16285 -37.93828 -35.93276 -33.44469 -33.31383 -31.43855 -31.01587 -30.25995 -28.39374 -25.75869 -24.12156 -22.95530 -22.18964 -21.52803 -21.33216 -19.54030 -18.58877 -16.85726 -16.80924 -16.53007 -16.20006 -15.57572 -15.56940 -15.54522 -14.81670 -14.57612 -14.40756 -13.94492 -13.78612 -13.45310 -13.10754 -12.63479 -12.46387 -12.38444 -12.12129 -12.03734 -11.93855 -11.52908 -11.35940 -11.14881 -11.13774 -10.94666 -10.90921 -10.59156 -9.94792 -9.65812 -9.42811 -9.17497 -9.00544 -8.78489 -8.60784 -8.31229 -5.95323 -3.99817 0.91663 1.03979 2.72134 3.27087 3.33697 3.38178 3.39569 3.42113 3.59173 4.33179 4.43964 4.45275 4.48097 4.52574 4.70829 4.77679 4.87007 4.88395 4.97052 5.07280 5.11199 5.26619 5.38295 5.39552 5.49464 5.55982 5.58349 5.74986 5.90128 5.90266 5.99107 6.01063 6.11843 6.23763 6.25200 6.36322 6.72226 6.90488 7.03181 7.75148 7.87370 7.89169 8.08203 8.39545 8.79371 9.08910 9.63688 11.15633 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.060876 B = 0.001656 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.838718 B =16906.845573 C =17325.030778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.130 4.130 11 C 0.508 3.492 12 O -0.535 6.535 13 N -0.746 5.746 14 C 0.120 3.880 15 C -0.127 4.127 16 C -0.116 4.116 17 C 0.060 3.940 18 O -0.315 6.315 19 C 0.132 3.868 20 C -0.155 4.155 21 C -0.081 4.081 22 C -0.162 4.162 23 C -0.081 4.081 24 C -0.210 4.210 25 H 0.261 0.739 26 H 0.023 0.977 27 H 0.024 0.976 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.397 0.603 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.443 -31.662 0.010 33.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.074 0.926 9 C -0.002 4.002 10 C -0.170 4.170 11 C 0.297 3.703 12 O -0.410 6.410 13 N -0.401 5.401 14 C -0.004 4.004 15 C -0.165 4.165 16 C -0.154 4.154 17 C -0.015 4.015 18 O -0.229 6.229 19 C 0.087 3.913 20 C -0.173 4.173 21 C -0.099 4.099 22 C -0.181 4.181 23 C -0.099 4.099 24 C -0.229 4.229 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.230 0.770 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.148 0.852 40 H 0.146 0.854 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 9.160 -31.489 0.015 32.794 hybrid contribution 1.210 0.943 -0.010 1.534 sum 10.371 -30.546 0.005 32.259 Atomic orbital electron populations 1.70000 1.06058 1.26571 1.50185 1.25026 0.94827 0.99230 0.95312 0.86585 0.79752 0.83511 0.78049 1.20686 1.21220 1.19911 1.21228 0.92928 0.91038 1.51398 0.92608 1.18905 0.93208 0.89400 0.98643 1.21863 1.00709 0.91975 1.02450 1.21574 0.88665 0.85681 0.74404 1.90673 1.14512 1.87667 1.48141 1.46197 1.10018 1.05646 1.78206 1.21187 0.94407 0.82413 1.02435 1.21670 0.98588 0.93100 1.03099 1.21437 0.98167 0.91341 1.04498 1.22863 0.95345 0.81705 1.01557 1.86070 1.35771 1.12695 1.88320 1.19057 0.90026 0.86626 0.95611 1.20499 1.00703 0.89687 1.06459 1.20993 0.93867 0.97672 0.97407 1.21084 0.94759 0.97774 1.04436 1.20979 0.99813 0.91979 0.97101 1.21308 0.92847 0.99893 1.08871 0.92956 0.95824 0.95806 0.90257 0.90268 0.76971 0.91697 0.91695 0.90933 0.90936 0.90263 0.90272 0.91833 0.91840 0.85162 0.85370 0.85938 0.85791 0.85414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.57 13.29 55.43 0.74 -26.83 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.53 -15.05 9.11 -34.44 -0.31 -15.36 16 8 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 10 C -0.13 -2.64 5.64 -27.88 -0.16 -2.79 16 11 C 0.51 9.80 7.83 -10.99 -0.09 9.72 16 12 O -0.53 -12.79 15.98 5.55 0.09 -12.70 16 13 N -0.75 -10.13 5.56 -60.29 -0.33 -10.47 16 14 C 0.12 1.40 5.67 -4.04 -0.02 1.37 16 15 C -0.13 -0.95 5.33 -26.73 -0.14 -1.09 16 16 C -0.12 -0.86 5.58 -26.73 -0.15 -1.01 16 17 C 0.06 0.43 4.74 37.16 0.18 0.61 16 18 O -0.31 -3.02 10.14 -19.42 -0.20 -3.22 16 19 C 0.13 1.20 6.69 -39.22 -0.26 0.94 16 20 C -0.15 -1.27 9.99 -39.43 -0.39 -1.67 16 21 C -0.08 -0.55 10.04 -39.61 -0.40 -0.95 16 22 C -0.16 -1.05 10.04 -39.56 -0.40 -1.45 16 23 C -0.08 -0.55 10.04 -39.61 -0.40 -0.95 16 24 C -0.21 -1.64 9.04 -39.44 -0.36 -2.00 16 25 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 26 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 28 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 29 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 30 H 0.40 4.06 8.47 -40.82 -0.35 3.72 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 38 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 39 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 40 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 41 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 42 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 43 H 0.13 0.80 6.30 -52.48 -0.33 0.47 16 LS Contribution 365.00 15.07 5.50 5.50 Total: -1.00 -35.42 365.00 -9.27 -44.70 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -6.93 Total: -1.49 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -3.12 Total: -12.18 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.40 Total: -37.30 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.11 Total: -15.92 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.42 -9.27 -44.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347442001.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.711 kcal (2) G-P(sol) polarization free energy of solvation -35.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds