Wall clock time and date at job start Tue Mar 31 2020 08:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86791 * 119.99843 * 2 1 4 4 H 1.48500 * 109.46958 * 269.99627 * 3 2 1 5 5 H 1.48499 * 109.47612 * 29.99346 * 3 2 1 6 6 H 1.48503 * 109.47383 * 150.00054 * 3 2 1 7 7 C 1.37873 * 119.99932 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00086 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00174 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47427 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47427 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99905 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99922 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99900 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47405 * 179.97438 * 14 13 11 16 16 C 1.52995 * 109.47181 * 180.02562 * 15 14 13 17 17 C 1.53001 * 109.47181 * 180.02562 * 16 15 14 18 18 O 1.42902 * 109.47386 * 180.02562 * 17 16 15 19 19 C 1.35898 * 116.99694 * 180.02562 * 18 17 16 20 20 C 1.38735 * 120.05254 * 179.97438 * 19 18 17 21 21 C 1.38144 * 119.94607 * 179.97438 * 20 19 18 22 22 C 1.38266 * 120.05233 * 0.02562 * 21 20 19 23 23 C 1.38269 * 120.11595 * 359.95530 * 22 21 20 24 24 C 1.38142 * 120.04935 * 0.04230 * 23 22 21 25 25 H 0.96999 * 119.99987 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47374 * 59.99635 * 9 7 2 27 27 H 1.09001 * 109.47419 * 299.99877 * 9 7 2 28 28 H 1.08999 * 109.46920 * 59.99629 * 10 9 7 29 29 H 1.08998 * 109.47220 * 299.99999 * 10 9 7 30 30 H 0.96996 * 120.00132 * 0.02562 * 13 11 10 31 31 H 1.09004 * 109.47175 * 59.99474 * 14 13 11 32 32 H 1.09009 * 109.47434 * 299.99903 * 14 13 11 33 33 H 1.08999 * 109.46920 * 59.99821 * 15 14 13 34 34 H 1.08993 * 109.46801 * 300.00004 * 15 14 13 35 35 H 1.08999 * 109.47370 * 60.00060 * 16 15 14 36 36 H 1.09006 * 109.47017 * 299.99902 * 16 15 14 37 37 H 1.08999 * 109.46920 * 59.99785 * 17 16 15 38 38 H 1.08998 * 109.47220 * 300.00155 * 17 16 15 39 39 H 1.08002 * 120.02704 * 359.70561 * 20 19 18 40 40 H 1.08001 * 119.97447 * 179.97438 * 21 20 19 41 41 H 1.08000 * 119.94089 * 179.97438 * 22 21 20 42 42 H 1.07992 * 119.97577 * 180.02562 * 23 22 21 43 43 H 1.08005 * 120.02748 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4918 -4.9672 -0.0001 12 8 0.2789 -4.9672 0.0000 13 7 2.1657 -6.1344 0.0003 14 6 1.4332 -7.4031 0.0003 15 6 2.4274 -8.5661 0.0001 16 6 1.6624 -9.8910 -0.0006 17 6 2.6566 -11.0540 0.0000 18 8 1.9421 -12.2916 -0.0013 19 6 2.6823 -13.4313 -0.0005 20 6 2.0537 -14.6680 -0.0011 21 6 2.8083 -15.8251 -0.0008 22 6 4.1890 -15.7514 0.0006 23 6 4.8180 -14.5200 0.0008 24 6 4.0678 -13.3601 0.0005 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 2.8719 -3.6043 0.8905 29 1 2.8719 -3.6044 -0.8894 30 1 3.1356 -6.1344 0.0014 31 1 0.8067 -7.4610 -0.8899 32 1 0.8062 -7.4608 0.8901 33 1 3.0541 -8.5084 0.8901 34 1 3.0539 -8.5083 -0.8898 35 1 1.0360 -9.9485 -0.8907 36 1 1.0355 -9.9491 0.8893 37 1 3.2826 -10.9963 0.8904 38 1 3.2839 -10.9962 -0.8896 39 1 0.9752 -14.7261 0.0026 40 1 2.3194 -16.7882 -0.0008 41 1 4.7772 -16.6572 0.0013 42 1 5.8965 -14.4651 0.0015 43 1 4.5594 -12.3984 0.0011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347442001.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:46 Heat of formation + Delta-G solvation = -101.360233 kcal Electronic energy + Delta-G solvation = -21029.414501 eV Core-core repulsion = 17651.863231 eV Total energy + Delta-G solvation = -3377.551270 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.04953 -40.65450 -38.50375 -36.94444 -35.54633 -34.36822 -32.95687 -31.93531 -30.89699 -29.36407 -27.52927 -25.09206 -23.69006 -23.25971 -22.61584 -22.17404 -21.00911 -19.18046 -18.76776 -17.44023 -17.41320 -17.19113 -16.85347 -16.69603 -16.56976 -16.35155 -15.75427 -15.30909 -14.83934 -14.47399 -14.41335 -14.30403 -14.17411 -13.84097 -13.25662 -13.09033 -13.07803 -13.04445 -12.80003 -12.47008 -12.42651 -12.19170 -12.05641 -11.90514 -11.66789 -11.62592 -11.51664 -11.30003 -10.73069 -10.56534 -10.05617 -9.94584 -9.16411 -8.17410 -6.31699 0.40009 0.50022 1.42772 1.45634 1.56559 1.72874 2.06424 2.38949 2.49907 2.85759 3.15624 3.72119 3.87770 3.91719 3.99722 4.07373 4.20463 4.22589 4.26471 4.29745 4.44898 4.51346 4.54711 4.57254 4.57829 4.67584 4.73867 4.79308 4.94342 5.09626 5.10623 5.20126 5.26142 5.37987 5.47533 5.49387 5.54218 5.61588 5.64026 5.86276 5.88276 6.18178 6.47385 6.64755 6.87137 7.37248 7.39322 8.95306 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.060876 B = 0.001656 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.838718 B =16906.845573 C =17325.030778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.975 3.025 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.255 1.255 7 C -0.544 4.544 8 H 0.077 0.923 9 C 0.039 3.961 10 C -0.119 4.119 11 C 0.508 3.492 12 O -0.593 6.593 13 N -0.718 5.718 14 C 0.116 3.884 15 C -0.110 4.110 16 C -0.113 4.113 17 C 0.060 3.940 18 O -0.336 6.336 19 C 0.109 3.891 20 C -0.175 4.175 21 C -0.086 4.086 22 C -0.167 4.167 23 C -0.088 4.088 24 C -0.219 4.219 25 H 0.262 0.738 26 H -0.019 1.019 27 H -0.019 1.019 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.418 0.582 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.130 0.870 40 H 0.149 0.851 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.060 -32.569 0.015 35.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.799 3.201 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.178 1.178 7 C -0.581 4.581 8 H 0.095 0.905 9 C 0.002 3.998 10 C -0.159 4.159 11 C 0.296 3.704 12 O -0.473 6.473 13 N -0.372 5.372 14 C -0.008 4.008 15 C -0.148 4.148 16 C -0.151 4.151 17 C -0.015 4.015 18 O -0.251 6.251 19 C 0.063 3.937 20 C -0.194 4.194 21 C -0.103 4.103 22 C -0.185 4.185 23 C -0.106 4.106 24 C -0.238 4.238 25 H 0.071 0.929 26 H 0.000 1.000 27 H 0.000 1.000 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.256 0.744 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.148 0.852 40 H 0.167 0.833 41 H 0.163 0.837 42 H 0.164 0.836 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 12.855 -32.448 0.020 34.902 hybrid contribution 0.068 1.111 -0.013 1.113 sum 12.923 -31.337 0.007 33.897 Atomic orbital electron populations 1.70185 1.08363 1.27784 1.51506 1.26155 0.95721 1.04012 0.94633 0.85300 0.78659 0.77637 0.78506 1.19717 1.21253 1.17831 1.21734 0.94058 0.91596 1.50754 0.90463 1.18712 0.93813 0.92646 0.94655 1.21636 0.99260 0.90029 1.04962 1.21379 0.87801 0.86990 0.74200 1.90660 1.16911 1.88495 1.51254 1.45877 1.11104 1.04685 1.75524 1.21333 0.95386 0.82769 1.01291 1.21544 0.97532 0.90798 1.04922 1.21368 0.98237 0.91688 1.03837 1.22921 0.95134 0.80717 1.02691 1.86027 1.36860 1.13489 1.88722 1.19320 0.90809 0.86646 0.96882 1.20733 1.01101 0.90268 1.07310 1.21302 0.94279 0.98088 0.96677 1.21444 0.94880 0.98695 1.03465 1.21330 1.01016 0.91798 0.96413 1.21533 0.92422 1.01020 1.08821 0.92896 1.00040 1.00017 0.87612 0.87612 0.74411 0.92985 0.92980 0.89070 0.89079 0.91024 0.91030 0.90645 0.90657 0.85206 0.83297 0.83716 0.83636 0.84113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.98 13.29 21.45 0.28 -59.70 16 2 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 3 Si 0.98 44.33 29.54 68.60 2.03 46.36 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.25 -10.69 7.11 99.48 0.71 -9.98 16 7 C -0.54 -31.03 9.11 25.60 0.23 -30.80 16 8 H 0.08 3.98 7.74 -2.91 -0.02 3.96 16 9 C 0.04 2.21 4.26 29.85 0.13 2.34 16 10 C -0.12 -4.73 5.64 29.85 0.17 -4.57 16 11 C 0.51 19.56 7.83 87.66 0.69 20.25 16 12 O -0.59 -29.63 15.98 -3.05 -0.05 -29.68 16 13 N -0.72 -18.23 5.56 -463.04 -2.57 -20.80 16 14 C 0.12 2.60 5.67 86.38 0.49 3.09 16 15 C -0.11 -1.38 5.33 30.59 0.16 -1.22 16 16 C -0.11 -1.56 5.58 30.59 0.17 -1.39 16 17 C 0.06 0.77 4.74 71.98 0.34 1.11 16 18 O -0.34 -6.38 10.14 -92.40 -0.94 -7.32 16 19 C 0.11 1.93 6.69 22.51 0.15 2.08 16 20 C -0.18 -2.86 9.99 22.37 0.22 -2.64 16 21 C -0.09 -1.05 10.04 22.25 0.22 -0.83 16 22 C -0.17 -1.84 10.04 22.28 0.22 -1.61 16 23 C -0.09 -1.02 10.04 22.25 0.22 -0.80 16 24 C -0.22 -3.11 9.04 22.36 0.20 -2.91 16 25 H 0.26 15.70 8.31 -92.71 -0.77 14.92 16 26 H -0.02 -1.20 8.10 -2.39 -0.02 -1.22 16 27 H -0.02 -1.19 8.10 -2.39 -0.02 -1.20 16 28 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 29 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 30 H 0.42 7.10 8.47 -92.71 -0.79 6.32 16 31 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 37 H 0.08 0.78 7.66 -2.39 -0.02 0.76 16 38 H 0.08 0.78 7.66 -2.39 -0.02 0.76 16 39 H 0.13 1.96 8.06 -2.91 -0.02 1.93 16 40 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 41 H 0.15 0.87 8.06 -2.91 -0.02 0.85 16 42 H 0.15 0.97 8.06 -2.91 -0.02 0.94 16 43 H 0.14 1.47 6.30 -2.91 -0.02 1.45 16 Total: -1.00 -81.21 365.00 3.04 -78.17 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 0.20 Total: 10.84 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: 4.09 Total: -17.87 kcal Atomic # 7 Polarization: -78.21 SS G_CDS: -2.29 Total: -80.50 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: -0.99 Total: -36.99 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -81.21 3.04 -78.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347442001.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.193 kcal (2) G-P(sol) polarization free energy of solvation -81.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds