Wall clock time and date at job start Tue Mar 31 2020 06:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46893 * 109.47484 * 2 1 4 4 C 1.46908 * 110.99886 * 301.83889 * 3 2 1 5 5 C 1.50708 * 109.46725 * 293.95395 * 4 3 2 6 6 H 1.08000 * 119.99851 * 359.97438 * 5 4 3 7 7 C 1.37869 * 119.99806 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00163 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00091 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47268 * 59.99659 * 9 7 5 11 11 H 1.48504 * 109.47182 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46985 * 299.99757 * 9 7 5 13 13 C 1.46902 * 111.00208 * 65.79056 * 3 2 1 14 14 C 1.50696 * 109.47199 * 75.65550 * 13 3 2 15 15 N 1.31264 * 126.19978 * 267.09159 * 14 13 3 16 16 N 1.28799 * 110.04077 * 179.85495 * 15 14 13 17 17 C 1.31389 * 109.26073 * 0.41345 * 16 15 14 18 18 C 1.46890 * 134.27206 * 179.71502 * 17 16 15 19 19 O 1.21743 * 120.78282 * 0.05793 * 18 17 16 20 20 N 1.35152 * 118.42927 * 180.02562 * 18 17 16 21 21 C 1.46497 * 119.85030 * 180.02562 * 20 18 17 22 22 C 1.38146 * 120.29456 * 359.97438 * 20 18 17 23 23 C 1.32810 * 121.84363 * 359.96580 * 22 20 18 24 24 N 1.34472 * 126.20427 * 87.39938 * 14 13 3 25 25 H 1.09005 * 109.46631 * 302.13052 * 1 2 3 26 26 H 1.08998 * 109.46802 * 62.12394 * 1 2 3 27 27 H 1.08999 * 109.47488 * 182.13131 * 1 2 3 28 28 H 1.09009 * 109.46606 * 120.00079 * 2 1 3 29 29 H 1.09001 * 109.46858 * 239.99184 * 2 1 3 30 30 H 1.09000 * 109.46848 * 53.95159 * 4 3 2 31 31 H 1.08999 * 109.47098 * 173.95527 * 4 3 2 32 32 H 0.97000 * 120.00368 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.46770 * 195.65572 * 13 3 2 34 34 H 1.09001 * 109.46960 * 315.65325 * 13 3 2 35 35 H 1.09002 * 109.47494 * 89.99656 * 21 20 18 36 36 H 1.09004 * 109.47439 * 209.99774 * 21 20 18 37 37 H 1.09000 * 109.47394 * 329.99779 * 21 20 18 38 38 H 1.08001 * 119.08066 * 180.02562 * 22 20 18 39 39 H 1.08001 * 119.46024 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.5132 2.1224 -1.1651 5 6 2.0976 1.5354 -2.4241 6 1 2.7777 0.6985 -2.3646 7 6 1.7650 2.0674 -3.6518 8 7 0.9372 3.0869 -3.7242 9 14 2.4888 1.3394 -5.2124 10 1 2.0951 -0.0883 -5.3215 11 1 1.9768 2.0850 -6.3902 12 1 3.9695 1.4424 -5.1661 13 6 1.6651 2.0688 1.2508 14 6 2.5691 1.5915 2.3581 15 7 2.3226 0.6064 3.1898 16 7 3.3068 0.4629 4.0081 17 6 4.2278 1.3608 3.7400 18 6 5.5380 1.6896 4.3170 19 8 5.9798 1.0584 5.2596 20 7 6.2416 2.7090 3.7763 21 6 7.5521 3.0632 4.3269 22 6 5.7310 3.4177 2.7060 23 6 4.5484 3.1293 2.1748 24 7 3.7719 2.1013 2.6768 25 1 -0.3633 0.5466 0.8703 26 1 -0.3633 0.4805 -0.9084 27 1 -0.3634 -1.0269 0.0382 28 1 1.8933 -0.5139 0.8901 29 1 1.8933 -0.5140 -0.8899 30 1 0.4264 2.0460 -1.1991 31 1 1.8014 3.1706 -1.0851 32 1 0.7029 3.4610 -4.5879 33 1 1.7840 3.1447 1.1229 34 1 0.6291 1.8455 1.5058 35 1 8.3277 2.4951 3.8132 36 1 7.7293 4.1295 4.1861 37 1 7.5746 2.8287 5.3911 38 1 6.3101 4.2283 2.2889 39 1 4.1865 3.7084 1.3381 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352888410.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:00 Heat of formation + Delta-G solvation = 66.202667 kcal Electronic energy + Delta-G solvation = -23333.207542 eV Core-core repulsion = 19891.674752 eV Total energy + Delta-G solvation = -3441.532790 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -44.78570 -41.49779 -39.01689 -38.61302 -36.03220 -34.77369 -33.09695 -31.38961 -31.05681 -29.65025 -28.53656 -26.68442 -25.25219 -25.04279 -24.65282 -22.65212 -21.15259 -19.95710 -19.60637 -18.34143 -18.17571 -17.83280 -17.04002 -16.86463 -16.58554 -16.24719 -15.88860 -15.74302 -15.08912 -14.64792 -14.49166 -14.39718 -14.01814 -13.50191 -13.45535 -13.27341 -13.15353 -13.04880 -12.98804 -12.75100 -12.56730 -12.45154 -11.97819 -11.90809 -11.85401 -11.74702 -11.54249 -11.30581 -10.68611 -10.53370 -9.18954 -9.06403 -8.15246 -6.22307 -0.26963 0.19923 1.12366 1.18797 1.44230 1.45479 1.46715 1.53991 2.04879 2.44016 2.70841 3.02006 3.18708 3.34286 3.55346 3.66280 3.89379 4.22073 4.23793 4.26529 4.39052 4.42850 4.52064 4.53996 4.63891 4.68213 4.80954 4.85429 4.94564 5.04095 5.18207 5.26090 5.36132 5.48697 5.51237 5.69608 5.88781 6.06261 6.25866 6.36895 6.54976 6.90981 7.23596 7.46159 8.94657 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.019613 B = 0.004245 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.259860 B = 6594.689008 C = 7456.685822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.063 3.937 3 N -0.535 5.535 4 C 0.207 3.793 5 C -0.517 4.517 6 H 0.054 0.946 7 C 0.014 3.986 8 N -0.927 5.927 9 Si 0.955 3.045 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.270 1.270 13 C 0.131 3.869 14 C 0.224 3.776 15 N -0.302 5.302 16 N -0.257 5.257 17 C 0.081 3.919 18 C 0.589 3.411 19 O -0.525 6.525 20 N -0.523 5.523 21 C 0.068 3.932 22 C 0.114 3.886 23 C -0.050 4.050 24 N -0.370 5.370 25 H 0.058 0.942 26 H 0.047 0.953 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.063 0.937 30 H -0.011 1.011 31 H 0.020 0.980 32 H 0.264 0.736 33 H 0.112 0.888 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.136 0.864 37 H 0.078 0.922 38 H 0.249 0.751 39 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.355 6.962 11.074 17.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.065 4.065 3 N -0.259 5.259 4 C 0.082 3.918 5 C -0.556 4.556 6 H 0.072 0.928 7 C -0.185 4.185 8 N -0.568 5.568 9 Si 0.781 3.219 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.195 1.195 13 C 0.001 3.999 14 C -0.042 4.042 15 N -0.147 5.147 16 N -0.103 5.103 17 C -0.182 4.182 18 C 0.376 3.624 19 O -0.399 6.399 20 N -0.243 5.243 21 C -0.071 4.071 22 C -0.005 4.005 23 C -0.167 4.167 24 N -0.054 5.054 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.007 0.993 31 H 0.038 0.962 32 H 0.072 0.928 33 H 0.130 0.870 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.154 0.846 37 H 0.097 0.903 38 H 0.265 0.735 39 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 11.393 5.572 12.162 17.572 hybrid contribution -0.396 0.327 -1.472 1.559 sum 10.998 5.899 10.690 16.432 Atomic orbital electron populations 1.22216 0.97521 1.02340 1.01295 1.21916 0.93712 0.90050 1.00822 1.62174 1.59991 1.02745 1.01030 1.19512 0.93125 0.92851 0.86345 1.21312 1.26964 1.16028 0.91277 0.92777 1.25635 0.95567 0.95398 1.01909 1.70025 1.35722 1.25083 1.25943 0.85656 0.78943 0.78373 0.78939 1.20130 1.20997 1.19524 1.20565 0.94413 0.99641 0.85330 1.24987 0.86174 0.93838 0.99214 1.74676 1.19325 1.15836 1.04817 1.74440 0.98144 1.18128 1.19613 1.24892 1.00131 0.97837 0.95383 1.16527 0.81529 0.81400 0.82919 1.90887 1.69891 1.51296 1.27832 1.45547 1.20631 1.28297 1.29803 1.22454 0.78981 1.05023 1.00671 1.22364 0.93440 0.97557 0.87167 1.21819 0.93853 0.94949 1.06057 1.43682 1.14428 1.24458 1.22847 0.92315 0.93411 0.91414 0.92251 0.91900 0.99333 0.96150 0.92754 0.87020 0.90198 0.89524 0.84626 0.90311 0.73498 0.77752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.24 9.25 71.98 0.67 -5.57 16 2 C 0.06 2.46 5.74 86.31 0.50 2.95 16 3 N -0.53 -20.98 4.62 -905.33 -4.18 -25.16 16 4 C 0.21 9.62 4.43 85.56 0.38 10.00 16 5 C -0.52 -26.88 8.54 25.60 0.22 -26.66 16 6 H 0.05 2.85 7.10 -2.91 -0.02 2.83 16 7 C 0.01 0.72 5.46 84.65 0.46 1.18 16 8 N -0.93 -51.39 13.29 21.44 0.28 -51.10 16 9 Si 0.95 41.94 29.54 68.60 2.03 43.97 16 10 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 13 C 0.13 4.25 5.42 85.56 0.46 4.72 16 14 C 0.22 7.58 7.03 138.08 0.97 8.56 16 15 N -0.30 -11.72 11.76 -50.37 -0.59 -12.32 16 16 N -0.26 -10.26 12.28 -51.58 -0.63 -10.89 16 17 C 0.08 2.73 8.12 135.97 1.10 3.84 16 18 C 0.59 16.85 7.66 86.45 0.66 17.51 16 19 O -0.53 -17.99 16.79 -4.49 -0.08 -18.06 16 20 N -0.52 -8.65 3.06 -667.07 -2.04 -10.69 16 21 C 0.07 0.52 10.42 127.77 1.33 1.86 16 22 C 0.11 1.27 10.24 82.52 0.84 2.11 16 23 C -0.05 -0.94 10.87 82.50 0.90 -0.04 16 24 N -0.37 -10.90 2.97 -338.65 -1.01 -11.91 16 25 H 0.06 1.94 6.19 -2.38 -0.01 1.92 16 26 H 0.05 1.92 6.36 -2.39 -0.02 1.91 16 27 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.06 2.30 7.12 -2.38 -0.02 2.29 16 29 H 0.06 2.66 6.91 -2.39 -0.02 2.64 16 30 H -0.01 -0.55 5.99 -2.39 -0.01 -0.56 16 31 H 0.02 0.98 7.83 -2.39 -0.02 0.96 16 32 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 33 H 0.11 3.14 7.74 -2.39 -0.02 3.12 16 34 H 0.08 2.56 5.90 -2.39 -0.01 2.54 16 35 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.14 -0.17 8.04 -2.38 -0.02 -0.19 16 37 H 0.08 0.88 7.45 -2.39 -0.02 0.87 16 38 H 0.25 -0.36 8.05 -2.91 -0.02 -0.38 16 39 H 0.21 3.03 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -75.93 326.13 3.35 -72.58 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: 1.08 Total: 3.13 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: 8.49 Total: 20.45 kcal Atomic # 7 Polarization: -113.89 SS G_CDS: -8.17 Total: -122.07 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.08 Total: -18.06 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -75.93 3.35 -72.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352888410.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.782 kcal (2) G-P(sol) polarization free energy of solvation -75.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds