Wall clock time and date at job start Tue Mar 31 2020 06:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 C 1.50698 * 109.47721 * 175.00208 * 4 2 1 6 6 H 1.08008 * 119.99163 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00614 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00228 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99783 * 359.97438 * 7 5 4 10 10 H 1.48489 * 109.47262 * 90.00178 * 9 7 5 11 11 H 1.48509 * 109.46916 * 210.00229 * 9 7 5 12 12 H 1.48493 * 109.47108 * 329.99715 * 9 7 5 13 13 N 1.46896 * 109.47053 * 120.00246 * 2 1 3 14 14 C 1.46903 * 111.00534 * 58.94727 * 13 2 1 15 15 C 1.46904 * 110.99835 * 294.99842 * 13 2 1 16 16 C 1.50700 * 109.46900 * 190.00343 * 15 13 2 17 17 N 1.31262 * 126.20179 * 90.02579 * 16 15 13 18 18 N 1.28809 * 110.03853 * 179.97438 * 17 16 15 19 19 C 1.31396 * 109.26224 * 359.97438 * 18 17 16 20 20 C 1.46881 * 134.26954 * 180.02562 * 19 18 17 21 21 O 1.21746 * 120.78025 * 359.97386 * 20 19 18 22 22 N 1.35149 * 118.43200 * 179.29603 * 20 19 18 23 23 H 0.96996 * 119.86206 * 180.22427 * 22 20 19 24 24 C 1.38153 * 120.28460 * 0.61616 * 22 20 19 25 25 C 1.32814 * 121.84909 * 359.56544 * 24 22 20 26 26 N 1.34476 * 126.19941 * 269.70473 * 16 15 13 27 27 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 29 29 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 30 30 H 1.09000 * 109.47325 * 295.00173 * 4 2 1 31 31 H 1.09008 * 109.47017 * 55.00082 * 4 2 1 32 32 H 0.96997 * 120.00333 * 180.02562 * 8 7 5 33 33 H 1.09007 * 109.46341 * 60.00342 * 14 13 2 34 34 H 1.08998 * 109.47113 * 179.97438 * 14 13 2 35 35 H 1.09001 * 109.47058 * 300.00764 * 14 13 2 36 36 H 1.09001 * 109.46891 * 309.99915 * 15 13 2 37 37 H 1.08997 * 109.47561 * 69.99979 * 15 13 2 38 38 H 1.08006 * 119.07734 * 179.59293 * 24 22 20 39 39 H 1.07999 * 119.45717 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6151 -1.3128 6 1 4.0790 -0.0863 -0.5392 7 6 4.2303 -1.1928 -2.3583 8 7 5.5410 -1.1005 -2.4135 9 14 3.3013 -2.1079 -3.6959 10 1 2.9396 -1.1628 -4.7826 11 1 4.1601 -3.1881 -4.2446 12 1 2.0658 -2.7005 -3.1236 13 7 2.0196 -0.6925 1.1994 14 6 1.5282 -2.0761 1.2460 15 6 1.6487 0.0391 2.4180 16 6 2.3679 -0.5572 3.6005 17 7 3.5455 -0.1962 4.0543 18 7 3.8624 -0.9114 5.0776 19 6 2.8955 -1.7660 5.3253 20 6 2.6854 -2.8121 6.3347 21 8 3.5254 -3.0323 7.1880 22 7 1.5315 -3.5150 6.3024 23 1 1.3697 -4.2083 6.9611 24 6 0.5847 -3.2556 5.3303 25 6 0.7647 -2.3152 4.4099 26 7 1.9169 -1.5514 4.3856 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.7516 -1.7715 -1.2056 31 1 1.6053 -0.2617 -2.1370 32 1 6.0253 -1.5066 -3.1493 33 1 1.8762 -2.6151 0.3647 34 1 1.9060 -2.5658 2.1436 35 1 0.4383 -2.0742 1.2639 36 1 1.9298 1.0870 2.3124 37 1 0.5722 -0.0345 2.5726 38 1 -0.3276 -3.8336 5.3187 39 1 -0.0013 -2.1447 3.6679 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352946270.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:59 Heat of formation + Delta-G solvation = 90.145035 kcal Electronic energy + Delta-G solvation = -23519.886178 eV Core-core repulsion = 20079.391607 eV Total energy + Delta-G solvation = -3440.494571 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.75473 -40.35159 -38.29520 -37.67733 -34.65472 -33.21700 -31.95803 -30.43338 -30.26075 -28.13246 -27.37933 -25.13733 -24.86518 -24.13738 -22.55918 -20.98956 -19.26485 -19.04697 -18.88361 -18.08857 -17.16395 -16.60975 -16.01498 -15.84349 -15.37067 -14.83718 -14.63010 -14.37173 -14.06148 -13.78944 -13.41202 -12.99764 -12.79201 -12.46292 -12.31127 -11.95701 -11.84154 -11.75507 -11.45587 -11.30424 -11.13377 -10.96111 -10.80388 -10.62368 -10.38776 -9.77376 -9.64662 -9.47558 -9.07354 -8.61183 -8.45182 -7.83710 -5.91823 -3.87631 0.63947 1.03170 2.04294 2.14971 2.51960 3.02548 3.31835 3.39447 3.40565 3.57984 3.91392 4.22492 4.35107 4.45163 4.50720 4.66402 4.99987 5.16875 5.37882 5.41535 5.45320 5.50251 5.59491 5.61888 5.69949 5.71189 5.81015 5.98532 6.15385 6.17675 6.30642 6.40253 6.60333 6.67465 6.96889 7.18301 7.29767 7.47387 7.57102 7.87182 8.43338 8.68625 9.22643 9.69447 11.22038 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020924 B = 0.004238 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.834793 B = 6604.691266 C = 6921.562030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.098 3.902 3 H 0.084 0.916 4 C -0.007 4.007 5 C -0.497 4.497 6 H 0.082 0.918 7 C 0.064 3.936 8 N -0.903 5.903 9 Si 0.872 3.128 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.270 1.270 13 N -0.504 5.504 14 C 0.019 3.981 15 C 0.134 3.866 16 C 0.230 3.770 17 N -0.254 5.254 18 N -0.203 5.203 19 C 0.092 3.908 20 C 0.602 3.398 21 O -0.485 6.485 22 N -0.640 5.640 23 H 0.428 0.572 24 C 0.084 3.916 25 C -0.020 4.020 26 N -0.392 5.392 27 H 0.054 0.946 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.017 0.983 31 H 0.017 0.983 32 H 0.260 0.740 33 H 0.088 0.912 34 H 0.048 0.952 35 H 0.022 0.978 36 H 0.115 0.885 37 H 0.053 0.947 38 H 0.188 0.812 39 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.774 -4.641 14.449 24.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.010 4.010 3 H 0.102 0.898 4 C -0.044 4.044 5 C -0.536 4.536 6 H 0.100 0.900 7 C -0.137 4.137 8 N -0.543 5.543 9 Si 0.700 3.300 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.195 1.195 13 N -0.227 5.227 14 C -0.129 4.129 15 C 0.003 3.997 16 C -0.035 4.035 17 N -0.097 5.097 18 N -0.049 5.049 19 C -0.170 4.170 20 C 0.388 3.612 21 O -0.354 6.354 22 N -0.284 5.284 23 H 0.268 0.732 24 C -0.037 4.037 25 C -0.139 4.139 26 N -0.080 5.080 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.036 0.964 31 H 0.035 0.965 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.067 0.933 35 H 0.040 0.960 36 H 0.133 0.867 37 H 0.070 0.930 38 H 0.205 0.795 39 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -16.199 -3.937 14.839 22.319 hybrid contribution -2.561 -1.621 -0.784 3.130 sum -18.760 -5.559 14.056 24.091 Atomic orbital electron populations 1.22598 0.99386 1.01487 1.01441 1.21777 0.89966 0.99007 0.90227 0.89786 1.19715 0.98226 0.95250 0.91231 1.21069 0.89246 1.34328 1.08909 0.90026 1.25019 0.94640 0.96234 0.97768 1.69916 1.06428 1.45812 1.32108 0.86930 0.80085 0.80119 0.82911 1.20505 1.21616 1.19466 1.62032 1.59314 1.01571 0.99813 1.22542 0.96393 0.90778 1.03151 1.20580 0.94802 0.99305 0.84984 1.24964 0.93579 0.89097 0.95869 1.74925 1.08942 1.20566 1.05259 1.74680 1.19491 1.02064 1.08661 1.24472 0.90588 1.04691 0.97213 1.16487 0.81696 0.79999 0.83068 1.90986 1.42453 1.66111 1.35832 1.43360 1.16520 1.37493 1.31046 0.73232 1.21332 0.95082 0.98020 0.89297 1.20984 0.91113 0.97459 1.04382 1.43683 1.15194 1.26151 1.22937 0.92746 0.93638 0.91938 0.96449 0.96496 0.92988 0.89375 0.93291 0.95993 0.86742 0.92967 0.79549 0.80350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.48 8.50 37.16 0.32 -2.16 16 2 C 0.10 1.70 2.29 -67.72 -0.16 1.54 16 3 H 0.08 1.52 8.03 -51.93 -0.42 1.10 16 4 C -0.01 -0.15 3.33 -27.89 -0.09 -0.24 16 5 C -0.50 -13.77 9.39 -34.44 -0.32 -14.09 16 6 H 0.08 2.53 7.99 -52.48 -0.42 2.11 16 7 C 0.06 1.84 5.47 -17.82 -0.10 1.74 16 8 N -0.90 -28.25 13.96 55.43 0.77 -27.47 16 9 Si 0.87 21.34 27.47 -169.99 -4.67 16.67 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 13 N -0.50 -8.59 4.46 -236.33 -1.05 -9.64 16 14 C 0.02 0.29 8.24 60.07 0.49 0.79 16 15 C 0.13 1.82 4.93 -4.97 -0.02 1.80 16 16 C 0.23 3.56 6.72 -155.29 -1.04 2.52 16 17 N -0.25 -4.86 12.23 32.73 0.40 -4.46 16 18 N -0.20 -3.88 12.29 32.34 0.40 -3.48 16 19 C 0.09 1.43 8.12 -154.29 -1.25 0.18 16 20 C 0.60 7.77 7.97 -12.60 -0.10 7.67 16 21 O -0.48 -7.76 17.99 5.15 0.09 -7.67 16 22 N -0.64 -4.46 5.38 -13.15 -0.07 -4.53 16 23 H 0.43 1.60 8.92 -40.82 -0.36 1.24 16 24 C 0.08 0.39 11.09 -16.56 -0.18 0.21 16 25 C -0.02 -0.15 9.46 -16.51 -0.16 -0.31 16 26 N -0.39 -5.05 2.54 -58.39 -0.15 -5.20 16 27 H 0.05 0.68 6.39 -51.93 -0.33 0.35 16 28 H 0.04 0.48 6.75 -51.93 -0.35 0.13 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.02 0.38 5.23 -51.93 -0.27 0.11 16 31 H 0.02 0.37 7.57 -51.92 -0.39 -0.02 16 32 H 0.26 7.66 8.31 -40.82 -0.34 7.33 16 33 H 0.09 1.58 6.22 -51.93 -0.32 1.25 16 34 H 0.05 0.71 5.66 -51.93 -0.29 0.42 16 35 H 0.02 0.26 6.28 -51.93 -0.33 -0.07 16 36 H 0.11 1.54 8.00 -51.93 -0.42 1.12 16 37 H 0.05 0.53 6.94 -51.93 -0.36 0.17 16 38 H 0.19 -0.10 8.06 -52.48 -0.42 -0.52 16 39 H 0.18 0.85 7.93 -52.49 -0.42 0.44 16 LS Contribution 318.98 15.07 4.81 4.81 Total: -1.00 -37.98 318.98 -6.78 -44.76 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: -4.69 Total: -3.42 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -2.62 Total: -0.37 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 0.30 Total: -54.79 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: 0.09 Total: -7.67 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -37.98 -6.78 -44.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352946270.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.906 kcal (2) G-P(sol) polarization free energy of solvation -37.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds