Wall clock time and date at job start Tue Mar 31 2020 06:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 C 1.50698 * 109.47721 * 175.00208 * 4 2 1 6 6 H 1.08008 * 119.99163 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00614 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00228 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99783 * 359.97438 * 7 5 4 10 10 H 1.48489 * 109.47262 * 90.00178 * 9 7 5 11 11 H 1.48509 * 109.46916 * 210.00229 * 9 7 5 12 12 H 1.48493 * 109.47108 * 329.99715 * 9 7 5 13 13 N 1.46896 * 109.47053 * 120.00246 * 2 1 3 14 14 C 1.46903 * 111.00534 * 58.94727 * 13 2 1 15 15 C 1.46904 * 110.99835 * 294.99842 * 13 2 1 16 16 C 1.50700 * 109.46900 * 190.00343 * 15 13 2 17 17 N 1.31262 * 126.20179 * 90.02579 * 16 15 13 18 18 N 1.28809 * 110.03853 * 179.97438 * 17 16 15 19 19 C 1.31396 * 109.26224 * 359.97438 * 18 17 16 20 20 C 1.46881 * 134.26954 * 180.02562 * 19 18 17 21 21 O 1.21746 * 120.78025 * 359.97386 * 20 19 18 22 22 N 1.35149 * 118.43200 * 179.29603 * 20 19 18 23 23 H 0.96996 * 119.86206 * 180.22427 * 22 20 19 24 24 C 1.38153 * 120.28460 * 0.61616 * 22 20 19 25 25 C 1.32814 * 121.84909 * 359.56544 * 24 22 20 26 26 N 1.34476 * 126.19941 * 269.70473 * 16 15 13 27 27 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 29 29 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 30 30 H 1.09000 * 109.47325 * 295.00173 * 4 2 1 31 31 H 1.09008 * 109.47017 * 55.00082 * 4 2 1 32 32 H 0.96997 * 120.00333 * 180.02562 * 8 7 5 33 33 H 1.09007 * 109.46341 * 60.00342 * 14 13 2 34 34 H 1.08998 * 109.47113 * 179.97438 * 14 13 2 35 35 H 1.09001 * 109.47058 * 300.00764 * 14 13 2 36 36 H 1.09001 * 109.46891 * 309.99915 * 15 13 2 37 37 H 1.08997 * 109.47561 * 69.99979 * 15 13 2 38 38 H 1.08006 * 119.07734 * 179.59293 * 24 22 20 39 39 H 1.07999 * 119.45717 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6151 -1.3128 6 1 4.0790 -0.0863 -0.5392 7 6 4.2303 -1.1928 -2.3583 8 7 5.5410 -1.1005 -2.4135 9 14 3.3013 -2.1079 -3.6959 10 1 2.9396 -1.1628 -4.7826 11 1 4.1601 -3.1881 -4.2446 12 1 2.0658 -2.7005 -3.1236 13 7 2.0196 -0.6925 1.1994 14 6 1.5282 -2.0761 1.2460 15 6 1.6487 0.0391 2.4180 16 6 2.3679 -0.5572 3.6005 17 7 3.5455 -0.1962 4.0543 18 7 3.8624 -0.9114 5.0776 19 6 2.8955 -1.7660 5.3253 20 6 2.6854 -2.8121 6.3347 21 8 3.5254 -3.0323 7.1880 22 7 1.5315 -3.5150 6.3024 23 1 1.3697 -4.2083 6.9611 24 6 0.5847 -3.2556 5.3303 25 6 0.7647 -2.3152 4.4099 26 7 1.9169 -1.5514 4.3856 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.7516 -1.7715 -1.2056 31 1 1.6053 -0.2617 -2.1370 32 1 6.0253 -1.5066 -3.1493 33 1 1.8762 -2.6151 0.3647 34 1 1.9060 -2.5658 2.1436 35 1 0.4383 -2.0742 1.2639 36 1 1.9298 1.0870 2.3124 37 1 0.5722 -0.0345 2.5726 38 1 -0.3276 -3.8336 5.3187 39 1 -0.0013 -2.1447 3.6679 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352946270.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:59 Heat of formation + Delta-G solvation = 59.251606 kcal Electronic energy + Delta-G solvation = -23521.225818 eV Core-core repulsion = 20079.391607 eV Total energy + Delta-G solvation = -3441.834210 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.81743 -41.27455 -39.54324 -38.60000 -35.66218 -34.96993 -33.53203 -31.68273 -31.11082 -29.63240 -28.56256 -26.18709 -26.05701 -25.04862 -24.29402 -22.07496 -20.44118 -20.08776 -19.83311 -18.89540 -18.76625 -18.22301 -17.00214 -16.93434 -16.63741 -16.10112 -15.89925 -15.50029 -15.10022 -14.77535 -14.58859 -14.27584 -13.93242 -13.86803 -13.69659 -13.42788 -12.94730 -12.91538 -12.76748 -12.57668 -12.40725 -12.25497 -12.07291 -11.97671 -11.76992 -11.59009 -11.32695 -11.11792 -10.70237 -10.65720 -9.30062 -8.97133 -8.14772 -6.15299 -0.27818 0.19367 1.11135 1.35933 1.38058 1.40494 1.47292 1.50933 2.05719 2.43620 2.76753 3.01529 3.15103 3.26509 3.43907 3.69210 4.00611 4.16710 4.18672 4.35822 4.43274 4.47724 4.50188 4.61820 4.65400 4.71011 4.88922 4.96698 5.13639 5.18277 5.24900 5.30337 5.32157 5.45770 5.61231 5.77783 5.84899 6.26023 6.30174 6.49986 6.52868 6.96080 7.27653 7.45876 9.03494 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020924 B = 0.004238 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.834793 B = 6604.691266 C = 6921.562030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.102 3.898 3 H 0.064 0.936 4 C -0.006 4.006 5 C -0.493 4.493 6 H 0.027 0.973 7 C -0.010 4.010 8 N -0.964 5.964 9 Si 0.949 3.051 10 H -0.268 1.268 11 H -0.296 1.296 12 H -0.239 1.239 13 N -0.547 5.547 14 C 0.026 3.974 15 C 0.144 3.856 16 C 0.221 3.779 17 N -0.309 5.309 18 N -0.265 5.265 19 C 0.080 3.920 20 C 0.597 3.403 21 O -0.528 6.528 22 N -0.612 5.612 23 H 0.448 0.552 24 C 0.122 3.878 25 C -0.065 4.065 26 N -0.373 5.373 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.026 0.974 31 H 0.025 0.975 32 H 0.259 0.741 33 H 0.053 0.947 34 H 0.048 0.952 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.258 0.742 39 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.757 -6.870 14.467 29.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.006 4.006 3 H 0.082 0.918 4 C -0.043 4.043 5 C -0.532 4.532 6 H 0.045 0.955 7 C -0.204 4.204 8 N -0.607 5.607 9 Si 0.773 3.227 10 H -0.194 1.194 11 H -0.223 1.223 12 H -0.162 1.162 13 N -0.272 5.272 14 C -0.121 4.121 15 C 0.014 3.986 16 C -0.046 4.046 17 N -0.152 5.152 18 N -0.111 5.111 19 C -0.184 4.184 20 C 0.383 3.617 21 O -0.402 6.402 22 N -0.257 5.257 23 H 0.292 0.708 24 C 0.002 3.998 25 C -0.181 4.181 26 N -0.059 5.059 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.274 0.726 39 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -22.278 -6.191 14.874 27.493 hybrid contribution -0.740 -0.975 -0.658 1.390 sum -23.018 -7.167 14.216 27.987 Atomic orbital electron populations 1.22443 0.94874 1.02965 1.03296 1.21529 0.93383 0.97127 0.88530 0.91781 1.19683 0.93911 0.96498 0.94243 1.21384 0.92588 1.32361 1.06820 0.95489 1.26075 0.95459 0.97763 1.01096 1.70135 1.08921 1.48154 1.33517 0.85684 0.79320 0.78455 0.79213 1.19354 1.22255 1.16202 1.61762 1.61681 1.02915 1.00858 1.22452 0.99074 0.89143 1.01458 1.20595 0.97064 0.98129 0.82812 1.25129 0.93005 0.89948 0.96539 1.74745 1.11605 1.22504 1.06391 1.74502 1.22162 1.04378 1.10091 1.24907 0.90657 1.04619 0.98206 1.16499 0.83064 0.80021 0.82152 1.90960 1.44477 1.67424 1.37314 1.43319 1.14652 1.36171 1.31530 0.70789 1.22500 0.95302 0.96073 0.85911 1.21966 0.90391 0.98456 1.07305 1.43816 1.15886 1.25210 1.20958 0.91278 0.90519 0.91491 0.95549 0.95636 0.93242 0.92820 0.93313 0.91309 0.87629 0.88027 0.72587 0.76618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.74 8.50 71.98 0.61 -3.13 16 2 C 0.10 3.39 2.29 44.92 0.10 3.49 16 3 H 0.06 2.33 8.03 -2.39 -0.02 2.31 16 4 C -0.01 -0.25 3.33 29.85 0.10 -0.15 16 5 C -0.49 -28.34 9.39 25.60 0.24 -28.10 16 6 H 0.03 1.79 7.99 -2.91 -0.02 1.77 16 7 C -0.01 -0.58 5.47 84.65 0.46 -0.12 16 8 N -0.96 -63.47 13.96 21.44 0.30 -63.17 16 9 Si 0.95 44.21 27.47 68.60 1.88 46.10 16 10 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 12 H -0.24 -9.83 6.54 99.48 0.65 -9.18 16 13 N -0.55 -18.11 4.46 -901.60 -4.02 -22.13 16 14 C 0.03 0.72 8.24 127.69 1.05 1.77 16 15 C 0.14 3.70 4.93 85.56 0.42 4.12 16 16 C 0.22 6.84 6.72 138.08 0.93 7.77 16 17 N -0.31 -12.72 12.23 -50.37 -0.62 -13.33 16 18 N -0.27 -10.94 12.29 -51.59 -0.63 -11.57 16 19 C 0.08 2.53 8.12 135.96 1.10 3.63 16 20 C 0.60 14.97 7.97 86.45 0.69 15.66 16 21 O -0.53 -17.35 17.99 -4.50 -0.08 -17.43 16 22 N -0.61 -6.08 5.38 -313.50 -1.69 -7.76 16 23 H 0.45 1.30 8.92 -92.71 -0.83 0.47 16 24 C 0.12 0.36 11.09 82.52 0.92 1.27 16 25 C -0.06 -0.65 9.46 82.50 0.78 0.13 16 26 N -0.37 -9.02 2.54 -338.65 -0.86 -9.88 16 27 H 0.07 1.28 6.39 -2.39 -0.02 1.27 16 28 H 0.08 1.17 6.75 -2.39 -0.02 1.16 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.03 1.10 5.23 -2.39 -0.01 1.09 16 31 H 0.03 1.05 7.57 -2.38 -0.02 1.04 16 32 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 33 H 0.05 1.82 6.22 -2.38 -0.01 1.81 16 34 H 0.05 1.30 5.66 -2.39 -0.01 1.29 16 35 H 0.07 1.19 6.28 -2.39 -0.01 1.18 16 36 H 0.11 2.85 8.00 -2.39 -0.02 2.83 16 37 H 0.10 1.57 6.94 -2.39 -0.02 1.55 16 38 H 0.26 -2.76 8.06 -2.91 -0.02 -2.78 16 39 H 0.22 0.47 7.93 -2.91 -0.02 0.45 16 Total: -1.00 -96.41 318.98 1.91 -94.50 By element: Atomic # 1 Polarization: -1.88 SS G_CDS: 0.22 Total: -1.66 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: 7.41 Total: 6.35 kcal Atomic # 7 Polarization: -120.34 SS G_CDS: -7.51 Total: -127.85 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.08 Total: -17.43 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.88 Total: 46.10 kcal Total: -96.41 1.91 -94.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352946270.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.747 kcal (2) G-P(sol) polarization free energy of solvation -96.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds