Wall clock time and date at job start Tue Mar 31 2020 07:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 120.00467 * 2 1 4 4 C 1.53003 * 109.46690 * 269.99824 * 3 2 1 5 5 C 1.53007 * 109.46886 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.47149 * 179.97438 * 5 4 3 7 7 C 1.36934 * 119.99899 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00064 * 0.02562 * 7 6 5 9 9 C 1.38818 * 119.99777 * 180.02562 * 7 6 5 10 10 N 1.31615 * 120.00007 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99700 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47266 * 90.00095 * 11 9 7 13 13 H 1.48503 * 109.46874 * 209.99884 * 11 9 7 14 14 H 1.48493 * 109.47253 * 329.99653 * 11 9 7 15 15 C 1.34781 * 119.99986 * 179.97438 * 2 1 3 16 16 O 1.21715 * 119.99711 * 184.53894 * 15 2 1 17 17 C 1.46590 * 119.99869 * 4.53454 * 15 2 1 18 18 C 1.41160 * 126.56614 * 323.16739 * 17 15 2 19 19 N 1.30519 * 108.27877 * 180.02562 * 18 17 15 20 20 N 1.39991 * 109.36680 * 359.97068 * 19 18 17 21 21 C 1.38457 * 143.84807 * 180.02562 * 20 19 18 22 22 C 1.33077 * 108.42221 * 179.97438 * 21 20 19 23 23 N 1.38063 * 108.13404 * 359.80131 * 22 21 20 24 24 H 0.96995 * 126.15778 * 180.02562 * 23 22 21 25 25 C 1.35009 * 108.27856 * 0.02562 * 20 19 18 26 26 H 1.08995 * 109.47480 * 264.83246 * 1 2 3 27 27 H 1.08998 * 109.46678 * 24.83519 * 1 2 3 28 28 H 1.09002 * 109.46816 * 144.82718 * 1 2 3 29 29 H 1.08999 * 109.46934 * 29.99350 * 3 2 1 30 30 H 1.08997 * 109.47602 * 149.99323 * 3 2 1 31 31 H 1.08999 * 109.47044 * 299.99457 * 4 3 2 32 32 H 1.09003 * 109.47357 * 59.99866 * 4 3 2 33 33 H 1.08999 * 109.47271 * 299.99852 * 5 4 3 34 34 H 1.09003 * 109.46797 * 60.00056 * 5 4 3 35 35 H 0.96998 * 119.99849 * 0.02562 * 6 5 4 36 36 H 0.97000 * 119.99995 * 180.02562 * 10 9 7 37 37 H 1.07998 * 125.85790 * 359.97438 * 18 17 15 38 38 H 1.08002 * 125.78675 * 359.94845 * 21 20 19 39 39 H 1.07999 * 125.93099 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7102 -1.4426 5 6 3.2172 3.0356 -1.4426 6 7 3.4620 3.4581 -2.8238 7 6 4.1344 4.6244 -3.0741 8 1 4.4847 5.2326 -2.2532 9 6 4.3658 5.0250 -4.3829 10 7 3.9385 4.2841 -5.3832 11 14 5.2837 6.6157 -4.7242 12 1 6.7397 6.3375 -4.8144 13 1 4.8101 7.1950 -6.0069 14 1 5.0311 7.5791 -3.6228 15 6 2.1389 -1.1672 0.0005 16 8 3.3532 -1.1688 0.0839 17 6 1.4094 -2.4348 -0.0993 18 6 0.1597 -2.7341 0.4849 19 7 -0.1566 -3.9604 0.1693 20 7 0.8563 -4.5113 -0.6247 21 6 1.2474 -5.6517 -1.3056 22 6 2.4262 -5.4168 -1.8768 23 7 2.8011 -4.1234 -1.5725 24 1 3.6166 -3.6820 -1.8569 25 6 1.8182 -3.5788 -0.7913 26 1 -0.3634 -0.0926 1.0234 27 1 -0.3632 0.9326 -0.4316 28 1 -0.3633 -0.8401 -0.5920 29 1 1.6085 2.0284 0.5137 30 1 3.1500 1.1384 0.5139 31 1 3.0417 0.9505 -1.9563 32 1 1.5002 1.8406 -1.9564 33 1 2.6278 3.7951 -0.9290 34 1 4.1696 2.9056 -0.9286 35 1 3.1471 2.9120 -3.5611 36 1 4.1006 4.5638 -6.2978 37 1 -0.4326 -2.0637 1.0900 38 1 0.6906 -6.5753 -1.3629 39 1 2.9898 -6.1154 -2.4774 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498648150.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:11 Heat of formation + Delta-G solvation = 119.382910 kcal Electronic energy + Delta-G solvation = -22405.622038 eV Core-core repulsion = 18966.395317 eV Total energy + Delta-G solvation = -3439.226721 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 3.41 seconds Orbital eigenvalues (eV) -43.33415 -39.67826 -38.16178 -35.98345 -34.71904 -33.04819 -32.13122 -30.04961 -29.88979 -28.57824 -26.89091 -25.26334 -23.24285 -22.75630 -22.07229 -21.35463 -20.86025 -19.63879 -17.81611 -17.00378 -16.71326 -16.44533 -16.01748 -15.68454 -15.30262 -14.85421 -14.53258 -14.31403 -14.18814 -13.75515 -13.44821 -13.23081 -12.96688 -12.84711 -12.80091 -12.23358 -11.81910 -11.80235 -11.17370 -10.89019 -10.81715 -10.78889 -10.67353 -10.31704 -10.04422 -9.73365 -9.64294 -9.42328 -8.82191 -8.52940 -7.84577 -6.86658 -5.71815 -3.00100 1.32975 1.67882 1.75609 2.21116 2.53446 3.03896 3.38546 3.46860 3.51495 3.53449 4.07367 4.42648 4.59961 4.64014 4.83672 4.95812 5.10098 5.14082 5.28427 5.35050 5.41418 5.44383 5.54389 5.61808 5.68004 5.80194 6.02166 6.16247 6.23747 6.37078 6.46347 6.56193 6.70145 6.79784 6.93922 6.96194 7.45492 7.53508 7.74499 8.37688 8.47360 9.58056 10.17370 10.52027 11.51409 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.024196 B = 0.002920 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.950111 B = 9586.216654 C =10244.671707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.611 5.611 3 C 0.121 3.879 4 C -0.138 4.138 5 C 0.156 3.844 6 N -0.734 5.734 7 C -0.237 4.237 8 H 0.071 0.929 9 C -0.017 4.017 10 N -0.935 5.935 11 Si 0.908 3.092 12 H -0.290 1.290 13 H -0.292 1.292 14 H -0.282 1.282 15 C 0.600 3.400 16 O -0.553 6.553 17 C -0.330 4.330 18 C 0.121 3.879 19 N -0.304 5.304 20 N -0.307 5.307 21 C 0.000 4.000 22 C 0.031 3.969 23 N -0.576 5.576 24 H 0.444 0.556 25 C 0.315 3.685 26 H 0.055 0.945 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.019 0.981 34 H 0.020 0.980 35 H 0.383 0.617 36 H 0.254 0.746 37 H 0.202 0.798 38 H 0.192 0.808 39 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.844 -21.441 10.527 25.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.343 5.343 3 C -0.002 4.002 4 C -0.177 4.177 5 C 0.028 3.972 6 N -0.378 5.378 7 C -0.368 4.368 8 H 0.089 0.911 9 C -0.212 4.212 10 N -0.584 5.584 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.207 1.207 15 C 0.390 3.610 16 O -0.432 6.432 17 C -0.350 4.350 18 C -0.061 4.061 19 N -0.126 5.126 20 N -0.077 5.077 21 C -0.126 4.126 22 C -0.097 4.097 23 N -0.188 5.188 24 H 0.286 0.714 25 C 0.080 3.920 26 H 0.073 0.927 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.037 0.963 34 H 0.038 0.962 35 H 0.216 0.784 36 H 0.064 0.936 37 H 0.218 0.782 38 H 0.209 0.791 39 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -9.087 -22.253 10.744 26.329 hybrid contribution 1.268 1.456 -0.857 2.113 sum -7.819 -20.797 9.887 24.319 Atomic orbital electron populations 1.21987 0.79942 1.03716 1.01193 1.47625 1.06816 1.05956 1.73881 1.21472 0.97607 0.83367 0.97761 1.22058 1.00978 0.98761 0.95894 1.20553 0.96060 0.91984 0.88609 1.42363 1.68328 1.25929 1.01167 1.19263 1.27636 0.98107 0.91807 0.91133 1.24751 1.01827 0.99091 0.95568 1.69668 1.51653 1.38997 0.98116 0.86168 0.79504 0.83150 0.77269 1.21748 1.21801 1.20745 1.16977 0.86228 0.82329 0.75514 1.90787 1.13813 1.87482 1.51110 1.18381 1.01740 0.94723 1.20184 1.24149 0.92994 0.92808 0.96190 1.77460 1.08201 1.11196 1.15721 1.46991 1.14793 1.10248 1.35671 1.21576 0.97289 0.91854 1.01895 1.22303 0.96529 0.86535 1.04335 1.41593 1.20528 1.12157 1.44549 0.71383 1.19172 0.85790 0.91647 0.95410 0.92671 0.90629 0.90852 0.90509 0.89684 0.91864 0.92027 0.96338 0.96200 0.78369 0.93590 0.78164 0.79081 0.77779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.69 9.02 59.85 0.54 1.23 16 2 N -0.61 -8.09 2.87 -183.16 -0.53 -8.62 16 3 C 0.12 1.74 5.42 -4.04 -0.02 1.72 16 4 C -0.14 -2.43 5.65 -26.73 -0.15 -2.58 16 5 C 0.16 3.32 6.26 -4.04 -0.03 3.29 16 6 N -0.73 -19.66 5.60 -59.90 -0.34 -19.99 16 7 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 8 H 0.07 1.99 7.83 -52.49 -0.41 1.57 16 9 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 10 N -0.94 -29.12 13.06 55.49 0.72 -28.39 16 11 Si 0.91 22.95 29.55 -169.99 -5.02 17.93 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 13 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 C 0.60 9.16 7.56 -12.89 -0.10 9.06 16 16 O -0.55 -10.38 16.63 5.18 0.09 -10.29 16 17 C -0.33 -4.36 5.40 -104.83 -0.57 -4.92 16 18 C 0.12 1.33 9.69 -17.00 -0.16 1.16 16 19 N -0.30 -3.73 12.61 30.84 0.39 -3.34 16 20 N -0.31 -3.52 4.67 -11.88 -0.06 -3.58 16 21 C 0.00 0.00 11.91 -16.35 -0.19 -0.20 16 22 C 0.03 0.17 11.92 -16.54 -0.20 -0.03 16 23 N -0.58 -5.16 6.24 -11.98 -0.07 -5.24 16 24 H 0.44 3.48 8.96 -40.82 -0.37 3.12 16 25 C 0.32 3.89 8.54 -154.53 -1.32 2.57 16 26 H 0.05 0.37 7.30 -51.93 -0.38 -0.01 16 27 H 0.07 0.66 8.03 -51.93 -0.42 0.24 16 28 H 0.07 0.66 5.86 -51.93 -0.30 0.36 16 29 H 0.08 0.93 8.07 -51.93 -0.42 0.51 16 30 H 0.08 1.35 7.36 -51.93 -0.38 0.96 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.38 10.76 7.67 -40.82 -0.31 10.45 16 36 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 37 H 0.20 1.47 6.24 -52.49 -0.33 1.14 16 38 H 0.19 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.21 0.14 8.06 -52.49 -0.42 -0.29 16 LS Contribution 333.74 15.07 5.03 5.03 Total: -1.00 -38.90 333.74 -7.22 -46.12 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -4.99 Total: 6.71 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: -2.44 Total: 3.65 kcal Atomic # 7 Polarization: -69.27 SS G_CDS: 0.12 Total: -69.15 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.29 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -38.90 -7.22 -46.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498648150.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.503 kcal (2) G-P(sol) polarization free energy of solvation -38.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.42 seconds