Wall clock time and date at job start Tue Mar 31 2020 07:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 120.00467 * 2 1 4 4 C 1.53003 * 109.46690 * 269.99824 * 3 2 1 5 5 C 1.53007 * 109.46886 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.47149 * 179.97438 * 5 4 3 7 7 C 1.36934 * 119.99899 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00064 * 0.02562 * 7 6 5 9 9 C 1.38818 * 119.99777 * 180.02562 * 7 6 5 10 10 N 1.31615 * 120.00007 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99700 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47266 * 90.00095 * 11 9 7 13 13 H 1.48503 * 109.46874 * 209.99884 * 11 9 7 14 14 H 1.48493 * 109.47253 * 329.99653 * 11 9 7 15 15 C 1.34781 * 119.99986 * 179.97438 * 2 1 3 16 16 O 1.21715 * 119.99711 * 184.53894 * 15 2 1 17 17 C 1.46590 * 119.99869 * 4.53454 * 15 2 1 18 18 C 1.41160 * 126.56614 * 323.16739 * 17 15 2 19 19 N 1.30519 * 108.27877 * 180.02562 * 18 17 15 20 20 N 1.39991 * 109.36680 * 359.97068 * 19 18 17 21 21 C 1.38457 * 143.84807 * 180.02562 * 20 19 18 22 22 C 1.33077 * 108.42221 * 179.97438 * 21 20 19 23 23 N 1.38063 * 108.13404 * 359.80131 * 22 21 20 24 24 H 0.96995 * 126.15778 * 180.02562 * 23 22 21 25 25 C 1.35009 * 108.27856 * 0.02562 * 20 19 18 26 26 H 1.08995 * 109.47480 * 264.83246 * 1 2 3 27 27 H 1.08998 * 109.46678 * 24.83519 * 1 2 3 28 28 H 1.09002 * 109.46816 * 144.82718 * 1 2 3 29 29 H 1.08999 * 109.46934 * 29.99350 * 3 2 1 30 30 H 1.08997 * 109.47602 * 149.99323 * 3 2 1 31 31 H 1.08999 * 109.47044 * 299.99457 * 4 3 2 32 32 H 1.09003 * 109.47357 * 59.99866 * 4 3 2 33 33 H 1.08999 * 109.47271 * 299.99852 * 5 4 3 34 34 H 1.09003 * 109.46797 * 60.00056 * 5 4 3 35 35 H 0.96998 * 119.99849 * 0.02562 * 6 5 4 36 36 H 0.97000 * 119.99995 * 180.02562 * 10 9 7 37 37 H 1.07998 * 125.85790 * 359.97438 * 18 17 15 38 38 H 1.08002 * 125.78675 * 359.94845 * 21 20 19 39 39 H 1.07999 * 125.93099 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7102 -1.4426 5 6 3.2172 3.0356 -1.4426 6 7 3.4620 3.4581 -2.8238 7 6 4.1344 4.6244 -3.0741 8 1 4.4847 5.2326 -2.2532 9 6 4.3658 5.0250 -4.3829 10 7 3.9385 4.2841 -5.3832 11 14 5.2837 6.6157 -4.7242 12 1 6.7397 6.3375 -4.8144 13 1 4.8101 7.1950 -6.0069 14 1 5.0311 7.5791 -3.6228 15 6 2.1389 -1.1672 0.0005 16 8 3.3532 -1.1688 0.0839 17 6 1.4094 -2.4348 -0.0993 18 6 0.1597 -2.7341 0.4849 19 7 -0.1566 -3.9604 0.1693 20 7 0.8563 -4.5113 -0.6247 21 6 1.2474 -5.6517 -1.3056 22 6 2.4262 -5.4168 -1.8768 23 7 2.8011 -4.1234 -1.5725 24 1 3.6166 -3.6820 -1.8569 25 6 1.8182 -3.5788 -0.7913 26 1 -0.3634 -0.0926 1.0234 27 1 -0.3632 0.9326 -0.4316 28 1 -0.3633 -0.8401 -0.5920 29 1 1.6085 2.0284 0.5137 30 1 3.1500 1.1384 0.5139 31 1 3.0417 0.9505 -1.9563 32 1 1.5002 1.8406 -1.9564 33 1 2.6278 3.7951 -0.9290 34 1 4.1696 2.9056 -0.9286 35 1 3.1471 2.9120 -3.5611 36 1 4.1006 4.5638 -6.2978 37 1 -0.4326 -2.0637 1.0900 38 1 0.6906 -6.5753 -1.3629 39 1 2.9898 -6.1154 -2.4774 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498648150.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:05 Heat of formation + Delta-G solvation = 90.994110 kcal Electronic energy + Delta-G solvation = -22406.853069 eV Core-core repulsion = 18966.395317 eV Total energy + Delta-G solvation = -3440.457752 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.06354 -40.74021 -38.96365 -37.46039 -36.32064 -34.20152 -33.57671 -31.70521 -30.65821 -29.55653 -27.92095 -26.78209 -24.89202 -23.42992 -23.25152 -22.39795 -22.07565 -20.60955 -19.15956 -18.71834 -17.67155 -17.25057 -16.96269 -16.68029 -16.41895 -16.20984 -15.96662 -15.55722 -15.24133 -15.12051 -14.76923 -14.37984 -14.21020 -13.76558 -13.67043 -13.46616 -13.34702 -12.90727 -12.74706 -12.72182 -12.40452 -12.09137 -12.02024 -11.81115 -11.79304 -11.55695 -10.95367 -10.86225 -10.16615 -9.62179 -9.03481 -8.62103 -7.96945 -5.26980 0.67173 0.84385 1.05504 1.46273 1.46951 1.49166 1.57698 1.93972 2.00559 2.37149 2.55654 3.32520 3.36502 3.76295 3.88220 3.92282 4.13182 4.16745 4.27849 4.34103 4.42211 4.47227 4.55130 4.65623 4.71085 4.75878 4.78141 4.86364 4.92777 4.99504 5.29654 5.31458 5.44283 5.47529 5.65007 5.82788 6.18911 6.25120 6.48238 6.68733 7.26979 7.30543 8.05677 8.29526 9.27031 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.024196 B = 0.002920 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.950111 B = 9586.216654 C =10244.671707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.609 5.609 3 C 0.129 3.871 4 C -0.120 4.120 5 C 0.155 3.845 6 N -0.750 5.750 7 C -0.249 4.249 8 H 0.078 0.922 9 C -0.079 4.079 10 N -0.972 5.972 11 Si 0.979 3.021 12 H -0.287 1.287 13 H -0.293 1.293 14 H -0.267 1.267 15 C 0.594 3.406 16 O -0.602 6.602 17 C -0.360 4.360 18 C 0.132 3.868 19 N -0.328 5.328 20 N -0.313 5.313 21 C -0.025 4.025 22 C 0.053 3.947 23 N -0.577 5.577 24 H 0.447 0.553 25 C 0.286 3.714 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.109 0.891 30 H 0.068 0.932 31 H 0.034 0.966 32 H 0.065 0.935 33 H 0.035 0.965 34 H 0.015 0.985 35 H 0.372 0.628 36 H 0.252 0.748 37 H 0.231 0.769 38 H 0.223 0.777 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.616 -21.921 11.098 26.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.339 5.339 3 C 0.006 3.994 4 C -0.159 4.159 5 C 0.028 3.972 6 N -0.392 5.392 7 C -0.380 4.380 8 H 0.096 0.904 9 C -0.271 4.271 10 N -0.623 5.623 11 Si 0.807 3.193 12 H -0.214 1.214 13 H -0.219 1.219 14 H -0.191 1.191 15 C 0.386 3.614 16 O -0.485 6.485 17 C -0.380 4.380 18 C -0.050 4.050 19 N -0.150 5.150 20 N -0.083 5.083 21 C -0.149 4.149 22 C -0.074 4.074 23 N -0.189 5.189 24 H 0.289 0.711 25 C 0.048 3.952 26 H 0.106 0.894 27 H 0.103 0.897 28 H 0.094 0.906 29 H 0.127 0.873 30 H 0.086 0.914 31 H 0.053 0.947 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.033 0.967 35 H 0.203 0.797 36 H 0.061 0.939 37 H 0.247 0.753 38 H 0.240 0.760 39 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -9.902 -22.749 11.355 27.285 hybrid contribution 1.516 1.484 -1.044 2.365 sum -8.386 -21.264 10.310 25.076 Atomic orbital electron populations 1.22269 0.77265 1.04336 1.03462 1.47689 1.08440 1.04869 1.72947 1.21313 0.97953 0.84841 0.95339 1.21862 0.99958 0.96052 0.98036 1.20707 0.96476 0.94016 0.85971 1.42615 1.68236 1.25402 1.02965 1.19695 1.27307 0.98804 0.92237 0.90421 1.25657 1.03232 1.02761 0.95412 1.69833 1.53234 1.40913 0.98293 0.85063 0.77887 0.79152 0.77197 1.21426 1.21916 1.19121 1.17360 0.85804 0.83477 0.74763 1.90743 1.15899 1.88233 1.53604 1.18365 1.02943 0.94400 1.22281 1.24560 0.92216 0.92690 0.95520 1.77349 1.09230 1.11813 1.16657 1.47278 1.14286 1.11138 1.35610 1.22430 0.98367 0.92076 1.02013 1.23259 0.95920 0.85331 1.02843 1.41869 1.20011 1.13325 1.43682 0.71114 1.19470 0.87097 0.92089 0.96495 0.89411 0.89731 0.90634 0.87269 0.91372 0.94675 0.91581 0.94684 0.96718 0.79702 0.93932 0.75277 0.76016 0.72807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.13 9.02 127.77 1.15 2.28 16 2 N -0.61 -15.76 2.87 -851.58 -2.45 -18.21 16 3 C 0.13 3.64 5.42 86.38 0.47 4.11 16 4 C -0.12 -4.26 5.65 30.60 0.17 -4.09 16 5 C 0.16 6.59 6.26 86.38 0.54 7.13 16 6 N -0.75 -40.65 5.60 -343.44 -1.92 -42.57 16 7 C -0.25 -14.52 9.99 84.04 0.84 -13.68 16 8 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 9 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 10 N -0.97 -61.34 13.06 21.65 0.28 -61.06 16 11 Si 0.98 47.18 29.55 68.60 2.03 49.21 16 12 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 13 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 14 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 15 C 0.59 18.55 7.56 86.42 0.65 19.20 16 16 O -0.60 -23.67 16.63 -4.40 -0.07 -23.74 16 17 C -0.36 -9.58 5.40 -20.00 -0.11 -9.69 16 18 C 0.13 2.79 9.69 85.61 0.83 3.62 16 19 N -0.33 -7.83 12.61 -56.33 -0.71 -8.54 16 20 N -0.31 -6.95 4.67 -191.50 -0.89 -7.84 16 21 C -0.03 -0.31 11.91 82.49 0.98 0.67 16 22 C 0.05 0.45 11.92 82.55 0.98 1.44 16 23 N -0.58 -9.99 6.24 -191.82 -1.20 -11.19 16 24 H 0.45 7.05 8.96 -92.71 -0.83 6.22 16 25 C 0.29 7.06 8.54 133.15 1.14 8.19 16 26 H 0.09 0.90 7.30 -2.39 -0.02 0.88 16 27 H 0.08 1.26 8.03 -2.39 -0.02 1.24 16 28 H 0.08 1.25 5.86 -2.39 -0.01 1.23 16 29 H 0.11 2.39 8.07 -2.39 -0.02 2.37 16 30 H 0.07 2.18 7.36 -2.39 -0.02 2.17 16 31 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.37 21.44 7.67 -92.71 -0.71 20.73 16 36 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 37 H 0.23 2.92 6.24 -2.91 -0.02 2.90 16 38 H 0.22 1.08 8.06 -2.91 -0.02 1.05 16 39 H 0.26 -0.74 8.06 -2.91 -0.02 -0.76 16 Total: -1.00 -86.80 333.74 2.74 -84.06 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: -0.44 Total: 24.90 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 8.12 Total: 14.98 kcal Atomic # 7 Polarization: -142.52 SS G_CDS: -6.89 Total: -149.41 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.07 Total: -23.74 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -86.80 2.74 -84.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498648150.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.053 kcal (2) G-P(sol) polarization free energy of solvation -86.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds