Wall clock time and date at job start Tue Mar 31 2020 06:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47356 * 2 1 4 4 C 1.37532 * 127.17714 * 275.46894 * 3 2 1 5 5 C 1.47875 * 126.47757 * 0.04456 * 4 3 2 6 6 C 1.35781 * 126.39902 * 179.66129 * 5 4 3 7 7 O 1.34661 * 106.94948 * 179.84150 * 6 5 4 8 8 C 1.33962 * 108.12364 * 0.42577 * 7 6 5 9 9 N 1.30086 * 109.18188 * 359.72839 * 8 7 6 10 10 N 1.31253 * 107.04384 * 180.02562 * 4 3 2 11 11 N 1.28509 * 109.95712 * 0.02562 * 10 4 3 12 12 C 1.31255 * 110.10366 * 359.97438 * 11 10 4 13 13 N 1.38544 * 126.37550 * 179.73949 * 12 11 10 14 14 C 1.46895 * 110.99733 * 294.02018 * 13 12 11 15 15 C 1.46900 * 110.99952 * 57.97431 * 13 12 11 16 16 H 1.09010 * 109.46815 * 300.00263 * 15 13 12 17 17 C 1.53001 * 109.47166 * 59.99672 * 15 13 12 18 18 C 1.50692 * 109.47205 * 180.02562 * 15 13 12 19 19 H 1.08008 * 119.99870 * 0.02562 * 18 15 13 20 20 C 1.37878 * 120.00493 * 179.97438 * 18 15 13 21 21 N 1.31521 * 119.99435 * 0.02562 * 20 18 15 22 22 Si 1.86799 * 120.00379 * 179.97438 * 20 18 15 23 23 H 1.48496 * 109.46876 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46714 * 120.00200 * 22 20 18 25 25 H 1.48496 * 109.46905 * 240.00292 * 22 20 18 26 26 H 1.08995 * 109.46999 * 300.00285 * 1 2 3 27 27 H 1.09005 * 109.46822 * 60.00177 * 1 2 3 28 28 H 1.08997 * 109.47233 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47072 * 239.99918 * 2 1 3 30 30 H 1.09000 * 109.47166 * 120.00119 * 2 1 3 31 31 H 1.07997 * 126.52852 * 359.97438 * 6 5 4 32 32 H 1.08006 * 125.40987 * 179.75639 * 8 7 6 33 33 H 1.09000 * 109.47735 * 65.56294 * 14 13 12 34 34 H 1.09001 * 109.47157 * 185.56547 * 14 13 12 35 35 H 1.09008 * 109.47335 * 305.56300 * 14 13 12 36 36 H 1.09003 * 109.46573 * 180.02562 * 17 15 13 37 37 H 1.08994 * 109.47169 * 299.99910 * 17 15 13 38 38 H 1.08996 * 109.46886 * 60.00636 * 17 15 13 39 39 H 0.96998 * 119.99492 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1970 2.1996 -1.0908 5 6 1.9299 1.8526 -2.5033 6 6 2.1007 2.6641 -3.5785 7 8 1.7449 1.9545 -4.6663 8 6 1.3559 0.7382 -4.2615 9 7 1.4621 0.6642 -2.9671 10 7 2.6489 3.3469 -0.6412 11 7 2.7639 3.3020 0.6380 12 6 2.3923 2.1246 1.0834 13 7 2.3863 1.7107 2.4055 14 6 3.7526 1.6344 2.9394 15 6 1.5476 2.5916 3.2292 16 1 1.9353 3.6094 3.1833 17 6 0.1117 2.5687 2.7013 18 6 1.5661 2.1115 4.6574 19 1 2.1435 1.2393 4.9265 20 6 0.8467 2.7861 5.6210 21 7 0.1440 3.8485 5.2934 22 14 0.8691 2.1905 7.3913 23 1 1.7286 0.9842 7.4968 24 1 1.4097 3.2611 8.2669 25 1 -0.5128 1.8530 7.8175 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.4565 3.6836 -3.5643 32 1 1.0096 -0.0552 -4.9073 33 1 4.1853 2.6342 2.9750 34 1 3.7270 1.2136 3.9446 35 1 4.3597 0.9986 2.2948 36 1 -0.5104 3.2227 3.3123 37 1 0.0987 2.9163 1.6684 38 1 -0.2760 1.5510 2.7472 39 1 -0.3623 4.3229 5.9712 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520992818.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:25 Heat of formation + Delta-G solvation = 120.619252 kcal Electronic energy + Delta-G solvation = -23805.612762 eV Core-core repulsion = 20366.439652 eV Total energy + Delta-G solvation = -3439.173110 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.50373 -42.38802 -37.06244 -35.55319 -34.76993 -32.93600 -31.31693 -30.24080 -29.33910 -28.52560 -25.69197 -24.44343 -24.00964 -23.39802 -22.85986 -21.51249 -20.50205 -19.38118 -17.94937 -16.86627 -16.66287 -16.18954 -15.92935 -15.49534 -15.09170 -14.74322 -14.61579 -13.81713 -13.72478 -13.53321 -13.17389 -12.79908 -12.37842 -12.10386 -11.90718 -11.68517 -11.27709 -11.13608 -11.06205 -10.95992 -10.89978 -10.74731 -10.31068 -10.27570 -10.13790 -10.10162 -9.88395 -9.53537 -9.08981 -8.53342 -8.17796 -7.74058 -6.08326 -4.14933 1.05016 1.81880 2.50815 2.68583 2.74669 3.26685 3.34629 3.37818 3.42304 3.63538 4.32193 4.50738 4.61274 4.70499 5.02534 5.24188 5.28072 5.33398 5.49571 5.53166 5.64277 5.74081 5.83588 5.89591 5.96659 6.16712 6.30717 6.34733 6.47170 6.59226 6.74238 6.86223 6.95537 7.12330 7.36687 7.37144 7.63990 7.73009 7.90729 8.16812 8.43104 8.88662 9.11022 9.50000 10.98666 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.031735 B = 0.004091 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.108117 B = 6842.405742 C = 7019.038632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.116 3.884 3 N -0.452 5.452 4 C 0.223 3.777 5 C 0.063 3.937 6 C -0.016 4.016 7 O -0.202 6.202 8 C 0.178 3.822 9 N -0.477 5.477 10 N -0.271 5.271 11 N -0.313 5.313 12 C 0.394 3.606 13 N -0.473 5.473 14 C 0.050 3.950 15 C 0.225 3.775 16 H 0.023 0.977 17 C -0.130 4.130 18 C -0.511 4.511 19 H 0.067 0.933 20 C 0.063 3.937 21 N -0.888 5.888 22 Si 0.901 3.099 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.229 0.771 32 H 0.253 0.747 33 H 0.036 0.964 34 H 0.091 0.909 35 H 0.043 0.957 36 H 0.092 0.908 37 H 0.001 0.999 38 H 0.033 0.967 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.936 -8.095 -16.994 18.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.007 4.007 3 N -0.145 5.145 4 C -0.042 4.042 5 C -0.056 4.056 6 C -0.090 4.090 7 O -0.087 6.087 8 C -0.050 4.050 9 N -0.207 5.207 10 N -0.115 5.115 11 N -0.158 5.158 12 C 0.038 3.962 13 N -0.200 5.200 14 C -0.098 4.098 15 C 0.121 3.879 16 H 0.040 0.960 17 C -0.188 4.188 18 C -0.549 4.549 19 H 0.085 0.915 20 C -0.140 4.140 21 N -0.526 5.526 22 Si 0.729 3.271 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.117 0.883 31 H 0.245 0.755 32 H 0.269 0.731 33 H 0.055 0.945 34 H 0.110 0.890 35 H 0.062 0.938 36 H 0.110 0.890 37 H 0.020 0.980 38 H 0.052 0.948 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.949 -7.584 -16.504 18.267 hybrid contribution -0.231 -0.396 0.583 0.742 sum 1.718 -7.980 -15.921 17.892 Atomic orbital electron populations 1.22067 0.93981 1.02743 1.03145 1.21815 0.96026 0.78404 1.04428 1.46478 1.48261 1.13883 1.05863 1.20903 1.07571 0.89619 0.86069 1.18438 1.06216 0.90922 0.90059 1.25076 1.02748 0.98951 0.82263 1.84502 1.63158 1.24682 1.36387 1.28021 0.99232 0.86603 0.91161 1.70672 1.17366 1.22819 1.09809 1.74237 1.16367 1.16662 1.04270 1.74690 1.21957 1.17045 1.02108 1.22817 0.97015 0.86685 0.89663 1.59281 1.13222 1.52985 0.94530 1.22223 0.86221 1.00486 1.00860 1.19444 0.88330 0.89944 0.90187 0.95971 1.21831 0.99825 1.00532 0.96616 1.21085 1.29913 1.13019 0.90926 0.91454 1.24917 0.95092 0.94803 0.99153 1.69915 1.30467 1.18500 1.33700 0.86395 0.77815 0.78697 0.84230 1.19652 1.20990 1.21001 0.91190 0.92375 0.90913 0.88647 0.88344 0.75454 0.73138 0.94529 0.89043 0.93803 0.88993 0.97966 0.94752 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 10.24 37.16 0.38 -1.93 16 2 C 0.12 1.74 6.41 -4.04 -0.03 1.71 16 3 N -0.45 -8.33 2.83 -114.63 -0.32 -8.66 16 4 C 0.22 4.02 7.93 -153.80 -1.22 2.80 16 5 C 0.06 0.89 6.96 -83.01 -0.58 0.31 16 6 C -0.02 -0.18 12.13 29.85 0.36 0.18 16 7 O -0.20 -1.87 10.75 5.63 0.06 -1.81 16 8 C 0.18 1.44 13.20 52.02 0.69 2.13 16 9 N -0.48 -5.75 9.75 -11.45 -0.11 -5.86 16 10 N -0.27 -5.55 12.20 32.59 0.40 -5.15 16 11 N -0.31 -7.16 12.08 30.34 0.37 -6.80 16 12 C 0.39 8.42 5.04 -318.67 -1.61 6.82 16 13 N -0.47 -10.42 4.62 -176.04 -0.81 -11.23 16 14 C 0.05 0.98 9.15 60.06 0.55 1.53 16 15 C 0.23 5.75 1.99 -68.87 -0.14 5.61 16 16 H 0.02 0.65 8.06 -51.92 -0.42 0.24 16 17 C -0.13 -3.27 8.59 37.16 0.32 -2.95 16 18 C -0.51 -13.53 7.95 -34.44 -0.27 -13.81 16 19 H 0.07 1.73 6.39 -52.48 -0.34 1.40 16 20 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 21 N -0.89 -25.08 11.32 55.43 0.63 -24.45 16 22 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H 0.07 1.19 6.93 -51.93 -0.36 0.83 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.10 1.28 6.97 -51.93 -0.36 0.92 16 30 H 0.10 1.47 8.10 -51.93 -0.42 1.05 16 31 H 0.23 2.02 8.06 -52.49 -0.42 1.59 16 32 H 0.25 0.66 8.06 -52.48 -0.42 0.23 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.09 1.79 6.29 -51.93 -0.33 1.46 16 35 H 0.04 0.76 8.11 -51.92 -0.42 0.34 16 36 H 0.09 2.52 6.07 -51.93 -0.32 2.20 16 37 H 0.00 0.03 7.22 -51.93 -0.38 -0.34 16 38 H 0.03 0.82 7.21 -51.93 -0.37 0.45 16 39 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 329.52 15.07 4.97 4.97 Total: -1.00 -32.57 329.52 -6.45 -39.02 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -4.96 Total: 0.25 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -1.64 Total: 4.01 kcal Atomic # 7 Polarization: -62.30 SS G_CDS: 0.14 Total: -62.15 kcal Atomic # 8 Polarization: -1.87 SS G_CDS: 0.06 Total: -1.81 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.57 -6.45 -39.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520992818.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.640 kcal (2) G-P(sol) polarization free energy of solvation -32.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds