Wall clock time and date at job start Tue Mar 31 2020 09:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48506 * 109.46812 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47258 * 299.99482 * 3 2 1 6 6 H 1.48499 * 109.47344 * 60.00017 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00020 * 163.07870 * 7 2 1 9 9 N 1.36937 * 120.00219 * 343.07619 * 7 2 1 10 10 C 1.46930 * 120.63259 * 331.83653 * 9 7 2 11 11 C 1.53183 * 108.89468 * 233.51494 * 10 9 7 12 12 C 1.53076 * 109.29478 * 305.57480 * 11 10 9 13 13 N 1.46500 * 109.43981 * 181.23571 * 12 11 10 14 14 C 1.34781 * 119.99994 * 84.79590 * 13 12 11 15 15 O 1.21585 * 119.99655 * 359.97438 * 14 13 12 16 16 N 1.34778 * 119.99776 * 179.97438 * 14 13 12 17 17 C 1.46502 * 119.99545 * 180.02562 * 16 14 13 18 18 C 1.52996 * 109.47048 * 180.02562 * 17 16 14 19 19 C 1.53004 * 109.47313 * 179.97438 * 18 17 16 20 20 F 1.39901 * 109.46841 * 175.00147 * 19 18 17 21 21 F 1.39901 * 109.46797 * 294.99753 * 19 18 17 22 22 C 1.53033 * 109.65646 * 61.15632 * 12 11 10 23 23 C 1.46925 * 120.63413 * 151.81378 * 9 7 2 24 24 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.58138 * 353.37071 * 10 9 7 26 26 H 1.08998 * 109.58912 * 113.65314 * 10 9 7 27 27 H 1.09005 * 109.50135 * 65.38839 * 11 10 9 28 28 H 1.09004 * 109.49749 * 185.48051 * 11 10 9 29 29 H 1.08994 * 109.34643 * 301.12502 * 12 11 10 30 30 H 0.97007 * 120.00023 * 264.79480 * 13 12 11 31 31 H 0.96997 * 120.00130 * 0.02562 * 16 14 13 32 32 H 1.09000 * 109.47128 * 299.99947 * 17 16 14 33 33 H 1.09000 * 109.47172 * 60.00227 * 17 16 14 34 34 H 1.09004 * 109.47177 * 300.00121 * 18 17 16 35 35 H 1.09000 * 109.47239 * 59.99913 * 18 17 16 36 36 H 1.08999 * 109.46860 * 54.99685 * 19 18 17 37 37 H 1.09003 * 109.49897 * 178.74799 * 22 12 11 38 38 H 1.09000 * 109.52987 * 58.66451 * 22 12 11 39 39 H 1.09001 * 109.58688 * 246.20238 * 23 9 7 40 40 H 1.08996 * 109.58570 * 6.47946 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2224 -0.2717 9 7 1.3702 -2.3622 0.3463 10 6 0.2263 -2.3400 1.2681 11 6 0.4942 -3.3197 2.4148 12 6 0.8122 -4.7007 1.8363 13 7 1.0400 -5.6473 2.9310 14 6 -0.0048 -6.2693 3.5124 15 8 -1.1364 -6.0445 3.1286 16 7 0.2049 -7.1405 4.5192 17 6 -0.9308 -7.8171 5.1508 18 6 -0.4215 -8.7441 6.2562 19 6 -1.6076 -9.4503 6.9163 20 9 -1.1362 -10.3813 7.8481 21 9 -2.4099 -8.5059 7.5657 22 6 2.0675 -4.6173 0.9650 23 6 1.8138 -3.6528 -0.1979 24 1 -0.4850 0.8400 -0.0004 25 1 0.0995 -1.3342 1.6688 26 1 -0.6774 -2.6380 0.7364 27 1 1.3429 -2.9691 3.0021 28 1 -0.3879 -3.3839 3.0520 29 1 -0.0281 -5.0409 1.2311 30 1 1.9428 -5.8263 3.2374 31 1 1.1076 -7.3195 4.8256 32 1 -1.6028 -7.0744 5.5808 33 1 -1.4665 -8.4023 4.4034 34 1 0.2507 -9.4869 5.8266 35 1 0.1139 -8.1586 7.0035 36 1 -2.1945 -9.9635 6.1546 37 1 2.3043 -5.6062 0.5724 38 1 2.9029 -4.2538 1.5634 39 1 1.0401 -4.0605 -0.8485 40 1 2.7331 -3.5130 -0.7666 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001521313146.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:01:13 Heat of formation + Delta-G solvation = -123.141361 kcal Electronic energy + Delta-G solvation = -23201.640967 eV Core-core repulsion = 19301.208418 eV Total energy + Delta-G solvation = -3900.432549 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.150 amu Computer time = -1.11 seconds Orbital eigenvalues (eV) -49.34626 -47.35391 -40.00278 -37.60130 -35.74234 -34.34804 -32.54382 -31.63728 -29.98081 -29.33716 -26.00565 -24.71573 -22.59544 -22.22598 -21.92648 -20.64144 -19.45199 -18.25269 -18.00996 -17.68543 -16.78431 -16.51966 -16.04415 -15.65451 -14.87864 -14.50115 -14.43675 -14.20199 -14.07822 -13.72581 -13.69088 -13.48758 -13.05871 -12.98801 -12.63080 -12.38153 -12.29264 -11.96625 -11.47945 -11.43300 -11.11902 -10.91869 -10.73478 -10.37793 -10.21175 -10.12128 -9.99717 -9.75043 -9.54909 -9.25885 -8.63043 -8.39231 -6.67373 -5.77527 -3.20837 2.58890 3.33784 3.37704 3.45427 3.45754 3.47490 3.81596 3.96896 4.08072 4.37586 4.50064 4.69645 4.80068 5.02944 5.30325 5.40567 5.43913 5.46992 5.53660 5.65958 5.84417 6.09737 6.24698 6.29614 6.36428 6.45800 6.59133 6.66595 6.76666 6.89273 6.95369 7.07828 7.40537 7.70576 7.80854 8.09733 8.46182 8.72092 9.21992 9.85303 10.42070 11.30980 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.037464 B = 0.002590 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.205545 B =10807.200417 C =11128.349402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.173 3.827 11 C -0.147 4.147 12 C 0.168 3.832 13 N -0.739 5.739 14 C 0.702 3.298 15 O -0.586 6.586 16 N -0.753 5.753 17 C 0.141 3.859 18 C -0.185 4.185 19 C 0.268 3.732 20 F -0.206 7.206 21 F -0.202 7.202 22 C -0.138 4.138 23 C 0.148 3.852 24 H 0.254 0.746 25 H 0.089 0.911 26 H 0.021 0.979 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.390 0.610 31 H 0.395 0.605 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.115 0.885 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.020 0.980 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.714 -19.595 12.113 23.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.047 3.953 11 C -0.187 4.187 12 C 0.064 3.936 13 N -0.392 5.392 14 C 0.402 3.598 15 O -0.464 6.464 16 N -0.410 5.410 17 C 0.015 3.985 18 C -0.223 4.223 19 C 0.214 3.786 20 F -0.187 7.187 21 F -0.184 7.184 22 C -0.178 4.178 23 C 0.021 3.979 24 H 0.064 0.936 25 H 0.107 0.893 26 H 0.039 0.961 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.099 0.901 30 H 0.223 0.777 31 H 0.228 0.772 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.120 0.880 35 H 0.113 0.887 36 H 0.133 0.867 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.038 0.962 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.526 -19.214 11.747 22.526 hybrid contribution 1.265 0.664 0.545 1.530 sum 1.791 -18.550 12.292 22.325 Atomic orbital electron populations 1.70045 1.05266 1.25446 1.53733 1.25073 0.95286 0.98466 1.00853 0.86237 0.79311 0.84003 0.77277 1.20279 1.21718 1.21579 1.19208 0.92537 0.84777 1.41814 0.91616 1.44117 1.35931 1.01528 1.49986 1.20755 0.88662 0.98085 0.87796 1.22583 1.00437 0.95257 1.00443 1.20930 0.98569 0.88078 0.85986 1.45529 1.07687 1.46874 1.39101 1.15970 0.85364 0.78886 0.79620 1.90947 1.21501 1.67810 1.66098 1.45001 1.09669 1.47751 1.38581 1.20957 0.88815 0.95072 0.93611 1.22868 0.98233 1.01203 1.00045 1.21731 0.90175 0.80947 0.85792 1.93000 1.89656 1.66642 1.69419 1.93022 1.75148 1.66303 1.83895 1.22333 0.96730 0.99674 0.99049 1.20838 0.98013 0.86749 0.92293 0.93621 0.89321 0.96110 0.92832 0.92780 0.90060 0.77705 0.77172 0.90628 0.91007 0.88004 0.88670 0.86727 0.92669 0.91914 0.96181 0.92332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.42 11.20 55.49 0.62 -25.80 16 2 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 3 Si 0.90 21.66 29.59 -169.99 -5.03 16.63 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.25 -6.92 9.58 -15.06 -0.14 -7.06 16 8 H 0.07 1.75 7.89 -52.49 -0.41 1.33 16 9 N -0.59 -14.79 3.00 -172.33 -0.52 -15.31 16 10 C 0.17 4.25 5.30 -3.71 -0.02 4.23 16 11 C -0.15 -2.95 5.66 -26.60 -0.15 -3.10 16 12 C 0.17 2.91 2.41 -67.87 -0.16 2.75 16 13 N -0.74 -10.10 5.08 -58.62 -0.30 -10.40 16 14 C 0.70 10.27 8.53 -86.91 -0.74 9.53 16 15 O -0.59 -11.37 16.01 5.29 0.08 -11.29 16 16 N -0.75 -7.28 5.56 -65.22 -0.36 -7.64 16 17 C 0.14 1.17 5.59 -4.04 -0.02 1.15 16 18 C -0.19 -0.96 5.55 -26.73 -0.15 -1.11 16 19 C 0.27 1.61 5.29 37.16 0.20 1.80 16 20 F -0.21 -1.60 17.34 2.25 0.04 -1.57 16 21 F -0.20 -1.81 17.01 2.25 0.04 -1.77 16 22 C -0.14 -2.25 5.55 -26.62 -0.15 -2.40 16 23 C 0.15 3.03 6.52 -3.71 -0.02 3.00 16 24 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 25 H 0.09 2.43 6.06 -51.93 -0.31 2.11 16 26 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.08 1.60 7.58 -51.93 -0.39 1.21 16 30 H 0.39 4.04 8.62 -40.82 -0.35 3.69 16 31 H 0.39 2.54 8.49 -40.82 -0.35 2.19 16 32 H 0.08 0.78 7.93 -51.93 -0.41 0.36 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.12 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 LS Contribution 335.22 15.07 5.05 5.05 Total: -1.00 -33.76 335.22 -7.83 -41.59 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.01 Total: 1.73 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: -1.45 Total: 8.76 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: -0.56 Total: -59.14 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.08 Total: -11.29 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.08 Total: -3.34 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.76 -7.83 -41.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521313146.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.548 kcal (2) G-P(sol) polarization free energy of solvation -33.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -1.11 seconds