Wall clock time and date at job start Tue Mar 31 2020 09:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48506 * 109.46812 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47258 * 299.99482 * 3 2 1 6 6 H 1.48499 * 109.47344 * 60.00017 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00020 * 163.07870 * 7 2 1 9 9 N 1.36937 * 120.00219 * 343.07619 * 7 2 1 10 10 C 1.46930 * 120.63259 * 331.83653 * 9 7 2 11 11 C 1.53183 * 108.89468 * 233.51494 * 10 9 7 12 12 C 1.53076 * 109.29478 * 305.57480 * 11 10 9 13 13 N 1.46500 * 109.43981 * 181.23571 * 12 11 10 14 14 C 1.34781 * 119.99994 * 84.79590 * 13 12 11 15 15 O 1.21585 * 119.99655 * 359.97438 * 14 13 12 16 16 N 1.34778 * 119.99776 * 179.97438 * 14 13 12 17 17 C 1.46502 * 119.99545 * 180.02562 * 16 14 13 18 18 C 1.52996 * 109.47048 * 180.02562 * 17 16 14 19 19 C 1.53004 * 109.47313 * 179.97438 * 18 17 16 20 20 F 1.39901 * 109.46841 * 175.00147 * 19 18 17 21 21 F 1.39901 * 109.46797 * 294.99753 * 19 18 17 22 22 C 1.53033 * 109.65646 * 61.15632 * 12 11 10 23 23 C 1.46925 * 120.63413 * 151.81378 * 9 7 2 24 24 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.58138 * 353.37071 * 10 9 7 26 26 H 1.08998 * 109.58912 * 113.65314 * 10 9 7 27 27 H 1.09005 * 109.50135 * 65.38839 * 11 10 9 28 28 H 1.09004 * 109.49749 * 185.48051 * 11 10 9 29 29 H 1.08994 * 109.34643 * 301.12502 * 12 11 10 30 30 H 0.97007 * 120.00023 * 264.79480 * 13 12 11 31 31 H 0.96997 * 120.00130 * 0.02562 * 16 14 13 32 32 H 1.09000 * 109.47128 * 299.99947 * 17 16 14 33 33 H 1.09000 * 109.47172 * 60.00227 * 17 16 14 34 34 H 1.09004 * 109.47177 * 300.00121 * 18 17 16 35 35 H 1.09000 * 109.47239 * 59.99913 * 18 17 16 36 36 H 1.08999 * 109.46860 * 54.99685 * 19 18 17 37 37 H 1.09003 * 109.49897 * 178.74799 * 22 12 11 38 38 H 1.09000 * 109.52987 * 58.66451 * 22 12 11 39 39 H 1.09001 * 109.58688 * 246.20238 * 23 9 7 40 40 H 1.08996 * 109.58570 * 6.47946 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2224 -0.2717 9 7 1.3702 -2.3622 0.3463 10 6 0.2263 -2.3400 1.2681 11 6 0.4942 -3.3197 2.4148 12 6 0.8122 -4.7007 1.8363 13 7 1.0400 -5.6473 2.9310 14 6 -0.0048 -6.2693 3.5124 15 8 -1.1364 -6.0445 3.1286 16 7 0.2049 -7.1405 4.5192 17 6 -0.9308 -7.8171 5.1508 18 6 -0.4215 -8.7441 6.2562 19 6 -1.6076 -9.4503 6.9163 20 9 -1.1362 -10.3813 7.8481 21 9 -2.4099 -8.5059 7.5657 22 6 2.0675 -4.6173 0.9650 23 6 1.8138 -3.6528 -0.1979 24 1 -0.4850 0.8400 -0.0004 25 1 0.0995 -1.3342 1.6688 26 1 -0.6774 -2.6380 0.7364 27 1 1.3429 -2.9691 3.0021 28 1 -0.3879 -3.3839 3.0520 29 1 -0.0281 -5.0409 1.2311 30 1 1.9428 -5.8263 3.2374 31 1 1.1076 -7.3195 4.8256 32 1 -1.6028 -7.0744 5.5808 33 1 -1.4665 -8.4023 4.4034 34 1 0.2507 -9.4869 5.8266 35 1 0.1139 -8.1586 7.0035 36 1 -2.1945 -9.9635 6.1546 37 1 2.3043 -5.6062 0.5724 38 1 2.9029 -4.2538 1.5634 39 1 1.0401 -4.0605 -0.8485 40 1 2.7331 -3.5130 -0.7666 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001521313146.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:01:10 Heat of formation + Delta-G solvation = -147.439820 kcal Electronic energy + Delta-G solvation = -23202.694627 eV Core-core repulsion = 19301.208418 eV Total energy + Delta-G solvation = -3901.486210 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.150 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.89531 -47.92311 -41.19087 -39.14603 -36.71653 -35.88839 -34.02035 -32.80111 -31.65882 -30.95243 -27.20904 -26.13855 -23.90683 -23.71661 -22.95957 -21.84011 -21.05583 -19.40156 -18.71085 -18.52827 -18.25852 -17.36606 -17.04436 -16.70407 -16.58943 -15.78282 -15.48900 -15.35373 -15.28606 -15.11172 -14.77335 -14.73424 -14.30046 -14.26277 -14.00392 -13.59029 -13.17969 -13.02886 -12.91511 -12.67053 -12.60921 -12.51515 -12.10604 -12.01358 -11.92305 -11.83837 -11.52465 -11.43092 -11.18877 -10.58927 -10.32585 -9.73877 -8.70634 -7.86771 -5.33323 1.47233 1.49043 1.59791 1.63088 2.17808 2.52082 2.88189 3.27767 3.33124 3.44415 3.53772 3.67564 3.70682 3.90406 4.11365 4.21830 4.25221 4.36636 4.49510 4.52275 4.68834 4.81974 4.85859 4.88380 4.95824 5.07594 5.10620 5.15283 5.33895 5.43229 5.48187 5.61955 5.65294 5.70885 6.04908 6.39510 7.13700 7.15382 7.62562 7.85194 8.37914 9.20427 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.037464 B = 0.002590 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.205545 B =10807.200417 C =11128.349402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.056 4.056 3 Si 0.969 3.031 4 H -0.261 1.261 5 H -0.294 1.294 6 H -0.293 1.293 7 C -0.259 4.259 8 H 0.075 0.925 9 N -0.610 5.610 10 C 0.183 3.817 11 C -0.130 4.130 12 C 0.180 3.820 13 N -0.724 5.724 14 C 0.697 3.303 15 O -0.638 6.638 16 N -0.731 5.731 17 C 0.138 3.862 18 C -0.169 4.169 19 C 0.261 3.739 20 F -0.215 7.215 21 F -0.223 7.223 22 C -0.119 4.119 23 C 0.140 3.860 24 H 0.249 0.751 25 H 0.053 0.947 26 H -0.012 1.012 27 H 0.060 0.940 28 H 0.042 0.958 29 H 0.055 0.945 30 H 0.412 0.588 31 H 0.415 0.585 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.129 0.871 35 H 0.098 0.902 36 H 0.144 0.856 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.011 0.989 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.261 -21.549 12.961 25.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.251 4.251 3 Si 0.797 3.203 4 H -0.185 1.185 5 H -0.221 1.221 6 H -0.220 1.220 7 C -0.389 4.389 8 H 0.092 0.908 9 N -0.333 5.333 10 C 0.056 3.944 11 C -0.171 4.171 12 C 0.075 3.925 13 N -0.379 5.379 14 C 0.397 3.603 15 O -0.520 6.520 16 N -0.388 5.388 17 C 0.013 3.987 18 C -0.207 4.207 19 C 0.207 3.793 20 F -0.197 7.197 21 F -0.204 7.204 22 C -0.159 4.159 23 C 0.014 3.986 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.006 0.994 27 H 0.079 0.921 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.249 0.751 31 H 0.252 0.748 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.147 0.853 35 H 0.116 0.884 36 H 0.161 0.839 37 H 0.111 0.889 38 H 0.094 0.906 39 H 0.029 0.971 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.157 -21.239 12.641 24.917 hybrid contribution 0.443 1.198 0.271 1.305 sum 3.600 -20.041 12.912 24.111 Atomic orbital electron populations 1.70218 1.06937 1.25774 1.55645 1.25893 0.96004 1.01851 1.01387 0.85181 0.78830 0.79700 0.76578 1.18510 1.22105 1.21990 1.19608 0.93028 0.85762 1.40501 0.90750 1.44367 1.35670 1.02752 1.50553 1.20453 0.87831 0.97280 0.88838 1.22324 1.00158 0.96156 0.98445 1.20506 0.98439 0.86890 0.86696 1.45078 1.08750 1.45872 1.38179 1.16183 0.84541 0.79340 0.80245 1.90925 1.23673 1.69541 1.67826 1.44777 1.11266 1.46048 1.36731 1.21016 0.88275 0.94935 0.94427 1.22741 0.98110 1.01048 0.98824 1.22126 0.90662 0.80750 0.85783 1.92979 1.89813 1.66915 1.69947 1.92985 1.75834 1.67195 1.84408 1.22118 0.96126 1.00406 0.97229 1.21062 0.97925 0.85569 0.94016 0.94218 0.92837 0.99395 0.92087 0.93908 0.92671 0.75147 0.74786 0.92903 0.90868 0.85313 0.88380 0.83886 0.88887 0.90560 0.97059 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.16 11.20 21.65 0.24 -56.92 16 2 C -0.06 -3.18 4.92 84.86 0.42 -2.76 16 3 Si 0.97 45.00 29.59 68.60 2.03 47.03 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 6 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 7 C -0.26 -14.12 9.58 84.03 0.81 -13.31 16 8 H 0.07 3.86 7.89 -2.91 -0.02 3.84 16 9 N -0.61 -30.65 3.00 -699.11 -2.09 -32.74 16 10 C 0.18 9.30 5.30 86.36 0.46 9.76 16 11 C -0.13 -5.27 5.66 30.68 0.17 -5.10 16 12 C 0.18 6.02 2.41 45.03 0.11 6.13 16 13 N -0.72 -17.94 5.08 -457.64 -2.33 -20.27 16 14 C 0.70 19.27 8.53 179.05 1.53 20.80 16 15 O -0.64 -24.82 16.01 -3.98 -0.06 -24.88 16 16 N -0.73 -12.23 5.56 -478.53 -2.66 -14.89 16 17 C 0.14 2.06 5.59 86.38 0.48 2.54 16 18 C -0.17 -1.27 5.55 30.59 0.17 -1.10 16 19 C 0.26 2.60 5.29 71.98 0.38 2.98 16 20 F -0.22 -2.93 17.34 44.97 0.78 -2.15 16 21 F -0.22 -3.80 17.01 44.97 0.77 -3.04 16 22 C -0.12 -3.53 5.55 30.67 0.17 -3.36 16 23 C 0.14 5.55 6.52 86.36 0.56 6.12 16 24 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 25 H 0.05 3.08 6.06 -2.38 -0.01 3.06 16 26 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 27 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 28 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 29 H 0.06 2.18 7.58 -2.39 -0.02 2.16 16 30 H 0.41 6.83 8.62 -92.70 -0.80 6.03 16 31 H 0.42 3.71 8.49 -92.71 -0.79 2.92 16 32 H 0.05 1.06 7.93 -2.39 -0.02 1.04 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.07 2.57 7.93 -2.39 -0.02 2.55 16 Total: -1.00 -76.81 335.22 1.41 -75.41 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -0.52 Total: 9.77 kcal Atomic # 6 Polarization: 17.43 SS G_CDS: 5.26 Total: 22.68 kcal Atomic # 7 Polarization: -117.98 SS G_CDS: -6.84 Total: -124.82 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -0.06 Total: -24.88 kcal Atomic # 9 Polarization: -6.73 SS G_CDS: 1.54 Total: -5.19 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -76.81 1.41 -75.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521313146.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.034 kcal (2) G-P(sol) polarization free energy of solvation -76.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds