Wall clock time and date at job start Tue Mar 31 2020 07:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47528 * 104.56139 * 3 2 1 5 5 C 1.50701 * 109.46810 * 57.27464 * 4 3 2 6 6 O 1.20820 * 120.00712 * 354.53386 * 5 4 3 7 7 O 1.34230 * 119.99414 * 174.52897 * 5 4 3 8 8 C 1.45206 * 116.99721 * 185.06736 * 7 5 4 9 9 C 1.50699 * 112.85096 * 295.12368 * 8 7 5 10 10 H 1.07999 * 119.99701 * 123.68996 * 9 8 7 11 11 C 1.37876 * 119.99870 * 303.69425 * 9 8 7 12 12 N 1.31511 * 120.00501 * 4.79478 * 11 9 8 13 13 Si 1.86802 * 119.99627 * 184.80220 * 11 9 8 14 14 H 1.48498 * 109.47337 * 90.00188 * 13 11 9 15 15 H 1.48507 * 109.46757 * 210.00035 * 13 11 9 16 16 H 1.48497 * 109.47147 * 329.99373 * 13 11 9 17 17 C 1.53786 * 113.61108 * 163.92826 * 8 7 5 18 18 C 1.53957 * 87.01630 * 220.04771 * 17 8 7 19 19 C 1.53782 * 113.61217 * 66.32177 * 8 7 5 20 20 C 1.53011 * 109.46767 * 224.55690 * 3 2 1 21 21 C 1.53000 * 109.46730 * 59.99960 * 20 3 2 22 22 C 1.53005 * 109.47096 * 60.00383 * 21 20 3 23 23 C 1.53001 * 109.46805 * 299.99085 * 22 21 20 24 24 C 1.52997 * 109.47432 * 344.55219 * 3 2 1 25 25 H 1.08998 * 109.46357 * 297.27859 * 4 3 2 26 26 H 1.08990 * 109.47256 * 177.27884 * 4 3 2 27 27 H 0.96998 * 120.00472 * 185.00518 * 12 11 9 28 28 H 1.08997 * 113.61422 * 334.56561 * 17 8 7 29 29 H 1.09000 * 113.61311 * 105.47592 * 17 8 7 30 30 H 1.08999 * 113.54055 * 270.80980 * 18 17 8 31 31 H 1.09005 * 113.74267 * 139.94747 * 18 17 8 32 32 H 1.08997 * 113.61382 * 254.52468 * 19 8 7 33 33 H 1.08997 * 113.61400 * 25.34771 * 19 8 7 34 34 H 1.08992 * 109.47145 * 179.97438 * 20 3 2 35 35 H 1.09002 * 109.47155 * 300.00158 * 20 3 2 36 36 H 1.08996 * 109.47600 * 299.99680 * 21 20 3 37 37 H 1.09002 * 109.46669 * 179.97438 * 21 20 3 38 38 H 1.08999 * 109.46647 * 179.97438 * 22 21 20 39 39 H 1.08989 * 109.47124 * 59.99801 * 22 21 20 40 40 H 1.08992 * 109.47542 * 300.00669 * 23 22 21 41 41 H 1.09002 * 109.46942 * 180.02562 * 23 22 21 42 42 H 1.09007 * 109.46349 * 60.00704 * 24 3 2 43 43 H 1.08996 * 109.47309 * 179.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1179 0.3635 -1.3961 5 6 2.5606 1.7037 -1.8018 6 8 1.7538 2.2612 -1.0961 7 8 2.9607 2.2779 -2.9472 8 6 2.4701 3.6172 -3.2196 9 6 0.9763 3.6651 -3.4130 10 1 0.3726 4.3150 -2.7968 11 6 0.3804 2.8792 -4.3764 12 7 1.1014 2.0192 -5.0620 13 14 -1.4513 3.0362 -4.7081 14 1 -1.6781 4.0614 -5.7582 15 1 -1.9846 1.7291 -5.1689 16 1 -2.1471 3.4427 -3.4608 17 6 3.2574 4.3499 -4.3187 18 6 3.1342 5.6157 -3.4511 19 6 2.9987 4.6780 -2.2398 20 6 3.1175 1.0288 1.0122 21 6 2.6075 0.6659 2.4083 22 6 3.1183 -0.7242 2.7924 23 6 2.6087 -1.7523 1.7803 24 6 3.1187 -1.3894 0.3842 25 1 2.7953 -0.3951 -2.1092 26 1 4.2067 0.4113 -1.3842 27 1 0.6983 1.5187 -5.7885 28 1 4.2821 3.9960 -4.4316 29 1 2.7244 4.4161 -5.2672 30 1 2.2355 6.1977 -3.6554 31 1 4.0379 6.2250 -3.4328 32 1 2.2573 5.0087 -1.5124 33 1 3.9519 4.4133 -1.7821 34 1 4.2074 1.0291 1.0126 35 1 2.7536 2.0192 0.7385 36 1 1.5176 0.6654 2.4083 37 1 2.9709 1.3982 3.1294 38 1 2.7553 -0.9825 3.7872 39 1 4.2082 -0.7236 2.7925 40 1 1.5188 -1.7528 1.7803 41 1 2.9722 -2.7428 2.0542 42 1 2.7557 -2.1219 -0.3369 43 1 4.2086 -1.3891 0.3838 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001525423769.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:19 Heat of formation + Delta-G solvation = -58.038084 kcal Electronic energy + Delta-G solvation = -24674.379950 eV Core-core repulsion = 21298.707269 eV Total energy + Delta-G solvation = -3375.672681 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.14074 -38.81112 -36.94881 -35.24850 -34.15781 -32.71488 -32.26129 -30.83550 -27.60200 -26.03734 -24.60205 -23.36989 -22.73392 -22.53470 -20.83420 -19.68908 -18.55430 -16.98584 -16.54964 -15.54804 -15.36326 -15.18396 -14.73103 -14.53765 -14.42668 -14.13345 -13.87362 -13.25835 -13.16250 -12.90198 -12.68932 -12.17969 -12.09819 -11.82038 -11.65588 -11.60394 -11.50160 -11.33943 -11.10856 -11.09383 -10.96979 -10.84581 -10.57975 -10.41307 -10.27071 -10.23789 -10.06637 -9.86506 -9.81734 -9.18393 -8.81063 -8.53469 -8.47174 -6.08911 -4.19400 3.27904 3.31537 3.36346 3.38358 3.42703 3.50497 3.91888 4.22360 4.39237 4.68410 4.78968 4.80599 5.05129 5.14920 5.23552 5.28210 5.42694 5.45974 5.61932 5.67284 5.69155 5.73270 5.77080 5.87476 5.88570 5.93176 6.00684 6.06093 6.10225 6.21699 6.22610 6.36857 6.43084 6.48380 6.50139 6.60226 6.88247 7.07605 7.23866 7.52362 7.79559 7.96006 8.17997 8.37442 8.82034 9.22641 9.51118 10.95840 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018452 B = 0.005708 C = 0.004956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.050623 B = 4904.338956 C = 5648.234807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C 0.231 3.769 3 C 0.057 3.943 4 C -0.114 4.114 5 C 0.458 3.542 6 O -0.502 6.502 7 O -0.338 6.338 8 C 0.244 3.756 9 C -0.509 4.509 10 H 0.065 0.935 11 C 0.077 3.923 12 N -0.862 5.862 13 Si 0.888 3.112 14 H -0.278 1.278 15 H -0.286 1.286 16 H -0.272 1.272 17 C -0.111 4.111 18 C -0.131 4.131 19 C -0.160 4.160 20 C -0.116 4.116 21 C -0.122 4.122 22 C -0.119 4.119 23 C -0.123 4.123 24 C -0.107 4.107 25 H 0.104 0.896 26 H 0.110 0.890 27 H 0.261 0.739 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.154 -5.301 10.131 15.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.111 5.111 2 C -0.087 4.087 3 C 0.054 3.946 4 C -0.153 4.153 5 C 0.300 3.700 6 O -0.390 6.390 7 O -0.253 6.253 8 C 0.210 3.790 9 C -0.546 4.546 10 H 0.083 0.917 11 C -0.129 4.129 12 N -0.499 5.499 13 Si 0.715 3.285 14 H -0.204 1.204 15 H -0.211 1.211 16 H -0.196 1.196 17 C -0.149 4.149 18 C -0.169 4.169 19 C -0.198 4.198 20 C -0.154 4.154 21 C -0.159 4.159 22 C -0.156 4.156 23 C -0.161 4.161 24 C -0.145 4.145 25 H 0.123 0.877 26 H 0.128 0.872 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.154 -5.275 10.190 14.077 hybrid contribution -0.743 0.077 -0.404 0.849 sum 7.411 -5.198 9.786 13.331 Atomic orbital electron populations 1.81095 1.12853 1.09047 1.08074 1.28410 0.94423 0.92584 0.93324 1.18071 0.82768 0.97733 0.96052 1.21508 1.02879 0.95795 0.95146 1.22663 0.80051 0.86857 0.80416 1.90566 1.31014 1.64383 1.53083 1.86445 1.66915 1.35013 1.36976 1.21122 0.93381 0.73891 0.90653 1.20938 0.89913 1.24865 1.18887 0.91653 1.24999 0.98092 0.93866 0.95924 1.70063 1.36308 1.23338 1.20150 0.86640 0.85644 0.77513 0.78715 1.20351 1.21146 1.19629 1.22992 0.98689 0.94190 0.99015 1.22552 1.00375 0.96040 0.97930 1.23542 0.99693 0.99093 0.97429 1.21814 1.00786 0.99792 0.93049 1.21564 1.01118 0.96638 0.96611 1.21558 1.00776 0.94927 0.98363 1.21578 1.01107 0.98866 0.94523 1.21637 1.01681 0.93802 0.97427 0.87745 0.87173 0.92923 0.92200 0.91063 0.90309 0.92963 0.91879 0.92163 0.90446 0.88753 0.92088 0.91540 0.92180 0.91606 0.92064 0.91415 0.90864 0.89644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -9.49 18.54 42.15 0.78 -8.70 16 2 C 0.23 4.29 9.20 -20.76 -0.19 4.09 16 3 C 0.06 0.80 0.49 -157.29 -0.08 0.73 16 4 C -0.11 -1.77 4.86 -27.88 -0.14 -1.90 16 5 C 0.46 9.95 6.90 36.01 0.25 10.20 16 6 O -0.50 -12.10 11.10 -18.75 -0.21 -12.31 16 7 O -0.34 -8.21 9.44 -39.26 -0.37 -8.58 16 8 C 0.24 6.00 0.52 -90.96 -0.05 5.96 16 9 C -0.51 -14.15 6.98 -34.44 -0.24 -14.39 16 10 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 11 C 0.08 2.16 5.43 -17.82 -0.10 2.06 16 12 N -0.86 -24.55 12.71 55.43 0.70 -23.85 16 13 Si 0.89 22.32 29.54 -169.99 -5.02 17.30 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 16 H -0.27 -7.02 7.11 56.52 0.40 -6.61 16 17 C -0.11 -2.47 7.51 -25.82 -0.19 -2.66 16 18 C -0.13 -2.57 7.81 -25.82 -0.20 -2.77 16 19 C -0.16 -3.41 6.64 -25.92 -0.17 -3.58 16 20 C -0.12 -1.50 4.45 -26.73 -0.12 -1.62 16 21 C -0.12 -1.41 5.70 -26.73 -0.15 -1.56 16 22 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 23 C -0.12 -1.20 5.70 -26.73 -0.15 -1.36 16 24 C -0.11 -1.08 4.71 -26.73 -0.13 -1.20 16 25 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 26 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.26 7.12 8.32 -40.82 -0.34 6.78 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.07 1.70 8.09 -51.93 -0.42 1.28 16 30 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 1.41 8.09 -51.93 -0.42 0.99 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 1.53 5.96 -51.93 -0.31 1.22 16 36 H 0.06 0.85 7.23 -51.93 -0.38 0.47 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.51 8.14 -51.94 -0.42 0.08 16 40 H 0.06 0.73 7.23 -51.93 -0.38 0.35 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 344.04 15.07 5.18 5.18 Total: -1.00 -33.06 344.04 -7.69 -40.75 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -6.94 Total: -0.54 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -1.81 Total: -9.25 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: 1.49 Total: -32.55 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.58 Total: -20.89 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.06 -7.69 -40.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525423769.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.288 kcal (2) G-P(sol) polarization free energy of solvation -33.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds