Wall clock time and date at job start Tue Mar 31 2020 07:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47528 * 104.56139 * 3 2 1 5 5 C 1.50701 * 109.46810 * 57.27464 * 4 3 2 6 6 O 1.20820 * 120.00712 * 354.53386 * 5 4 3 7 7 O 1.34230 * 119.99414 * 174.52897 * 5 4 3 8 8 C 1.45206 * 116.99721 * 185.06736 * 7 5 4 9 9 C 1.50699 * 112.85096 * 295.12368 * 8 7 5 10 10 H 1.07999 * 119.99701 * 123.68996 * 9 8 7 11 11 C 1.37876 * 119.99870 * 303.69425 * 9 8 7 12 12 N 1.31511 * 120.00501 * 4.79478 * 11 9 8 13 13 Si 1.86802 * 119.99627 * 184.80220 * 11 9 8 14 14 H 1.48498 * 109.47337 * 90.00188 * 13 11 9 15 15 H 1.48507 * 109.46757 * 210.00035 * 13 11 9 16 16 H 1.48497 * 109.47147 * 329.99373 * 13 11 9 17 17 C 1.53786 * 113.61108 * 163.92826 * 8 7 5 18 18 C 1.53957 * 87.01630 * 220.04771 * 17 8 7 19 19 C 1.53782 * 113.61217 * 66.32177 * 8 7 5 20 20 C 1.53011 * 109.46767 * 224.55690 * 3 2 1 21 21 C 1.53000 * 109.46730 * 59.99960 * 20 3 2 22 22 C 1.53005 * 109.47096 * 60.00383 * 21 20 3 23 23 C 1.53001 * 109.46805 * 299.99085 * 22 21 20 24 24 C 1.52997 * 109.47432 * 344.55219 * 3 2 1 25 25 H 1.08998 * 109.46357 * 297.27859 * 4 3 2 26 26 H 1.08990 * 109.47256 * 177.27884 * 4 3 2 27 27 H 0.96998 * 120.00472 * 185.00518 * 12 11 9 28 28 H 1.08997 * 113.61422 * 334.56561 * 17 8 7 29 29 H 1.09000 * 113.61311 * 105.47592 * 17 8 7 30 30 H 1.08999 * 113.54055 * 270.80980 * 18 17 8 31 31 H 1.09005 * 113.74267 * 139.94747 * 18 17 8 32 32 H 1.08997 * 113.61382 * 254.52468 * 19 8 7 33 33 H 1.08997 * 113.61400 * 25.34771 * 19 8 7 34 34 H 1.08992 * 109.47145 * 179.97438 * 20 3 2 35 35 H 1.09002 * 109.47155 * 300.00158 * 20 3 2 36 36 H 1.08996 * 109.47600 * 299.99680 * 21 20 3 37 37 H 1.09002 * 109.46669 * 179.97438 * 21 20 3 38 38 H 1.08999 * 109.46647 * 179.97438 * 22 21 20 39 39 H 1.08989 * 109.47124 * 59.99801 * 22 21 20 40 40 H 1.08992 * 109.47542 * 300.00669 * 23 22 21 41 41 H 1.09002 * 109.46942 * 180.02562 * 23 22 21 42 42 H 1.09007 * 109.46349 * 60.00704 * 24 3 2 43 43 H 1.08996 * 109.47309 * 179.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1179 0.3635 -1.3961 5 6 2.5606 1.7037 -1.8018 6 8 1.7538 2.2612 -1.0961 7 8 2.9607 2.2779 -2.9472 8 6 2.4701 3.6172 -3.2196 9 6 0.9763 3.6651 -3.4130 10 1 0.3726 4.3150 -2.7968 11 6 0.3804 2.8792 -4.3764 12 7 1.1014 2.0192 -5.0620 13 14 -1.4513 3.0362 -4.7081 14 1 -1.6781 4.0614 -5.7582 15 1 -1.9846 1.7291 -5.1689 16 1 -2.1471 3.4427 -3.4608 17 6 3.2574 4.3499 -4.3187 18 6 3.1342 5.6157 -3.4511 19 6 2.9987 4.6780 -2.2398 20 6 3.1175 1.0288 1.0122 21 6 2.6075 0.6659 2.4083 22 6 3.1183 -0.7242 2.7924 23 6 2.6087 -1.7523 1.7803 24 6 3.1187 -1.3894 0.3842 25 1 2.7953 -0.3951 -2.1092 26 1 4.2067 0.4113 -1.3842 27 1 0.6983 1.5187 -5.7885 28 1 4.2821 3.9960 -4.4316 29 1 2.7244 4.4161 -5.2672 30 1 2.2355 6.1977 -3.6554 31 1 4.0379 6.2250 -3.4328 32 1 2.2573 5.0087 -1.5124 33 1 3.9519 4.4133 -1.7821 34 1 4.2074 1.0291 1.0126 35 1 2.7536 2.0192 0.7385 36 1 1.5176 0.6654 2.4083 37 1 2.9709 1.3982 3.1294 38 1 2.7553 -0.9825 3.7872 39 1 4.2082 -0.7236 2.7925 40 1 1.5188 -1.7528 1.7803 41 1 2.9722 -2.7428 2.0542 42 1 2.7557 -2.1219 -0.3369 43 1 4.2086 -1.3891 0.3838 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001525423769.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:16 Heat of formation + Delta-G solvation = -76.764705 kcal Electronic energy + Delta-G solvation = -24675.191997 eV Core-core repulsion = 21298.707269 eV Total energy + Delta-G solvation = -3376.484728 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 4.05 seconds Orbital eigenvalues (eV) -41.53534 -40.28684 -38.57942 -36.68711 -35.93396 -34.40176 -33.83590 -31.69662 -28.88177 -27.96738 -26.34027 -24.93750 -23.89292 -23.58738 -21.98116 -21.05268 -20.44588 -18.76415 -17.80235 -17.10948 -17.00386 -16.81734 -16.36601 -16.12303 -15.65068 -15.47901 -15.21375 -14.66168 -14.53195 -14.16879 -14.09162 -13.69761 -13.52694 -13.20879 -13.03816 -13.01833 -12.91719 -12.84670 -12.73568 -12.61901 -12.42716 -12.20409 -12.15704 -11.96141 -11.74118 -11.59675 -11.38971 -11.26414 -11.01148 -10.86491 -10.79512 -10.39013 -10.36635 -8.23737 -6.36953 1.23198 1.27590 1.35245 1.82821 1.89665 1.97437 2.29127 2.40110 2.99828 3.09150 3.63563 3.79163 3.86395 4.02124 4.03999 4.17846 4.19274 4.31030 4.34772 4.46830 4.53804 4.61951 4.66406 4.71318 4.79073 4.84249 4.89008 4.95066 4.98119 5.12606 5.18165 5.21037 5.27186 5.28696 5.37729 5.42440 5.44237 5.50057 5.56805 5.60997 5.78024 6.05574 6.54674 6.65801 6.75710 7.29902 7.52390 8.80185 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018452 B = 0.005708 C = 0.004956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.050623 B = 4904.338956 C = 5648.234807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C 0.249 3.751 3 C 0.055 3.945 4 C -0.106 4.106 5 C 0.443 3.557 6 O -0.535 6.535 7 O -0.351 6.351 8 C 0.218 3.782 9 C -0.520 4.520 10 H 0.038 0.962 11 C 0.038 3.962 12 N -0.881 5.881 13 Si 0.929 3.071 14 H -0.257 1.257 15 H -0.285 1.285 16 H -0.289 1.289 17 C -0.108 4.108 18 C -0.114 4.114 19 C -0.150 4.150 20 C -0.113 4.113 21 C -0.122 4.122 22 C -0.112 4.112 23 C -0.125 4.125 24 C -0.101 4.101 25 H 0.107 0.893 26 H 0.162 0.838 27 H 0.262 0.738 28 H 0.080 0.920 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.041 0.959 33 H 0.084 0.916 34 H 0.120 0.880 35 H 0.053 0.947 36 H 0.021 0.979 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.097 0.903 40 H 0.027 0.973 41 H 0.096 0.904 42 H 0.076 0.924 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.721 -6.260 10.826 18.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.188 5.188 2 C -0.067 4.067 3 C 0.052 3.948 4 C -0.144 4.144 5 C 0.287 3.713 6 O -0.426 6.426 7 O -0.267 6.267 8 C 0.184 3.816 9 C -0.557 4.557 10 H 0.057 0.943 11 C -0.165 4.165 12 N -0.518 5.518 13 Si 0.755 3.245 14 H -0.182 1.182 15 H -0.210 1.210 16 H -0.215 1.215 17 C -0.146 4.146 18 C -0.151 4.151 19 C -0.188 4.188 20 C -0.151 4.151 21 C -0.159 4.159 22 C -0.149 4.149 23 C -0.162 4.162 24 C -0.139 4.139 25 H 0.125 0.875 26 H 0.180 0.820 27 H 0.071 0.929 28 H 0.098 0.902 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.112 0.888 32 H 0.060 0.940 33 H 0.102 0.898 34 H 0.138 0.862 35 H 0.072 0.928 36 H 0.040 0.960 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.116 0.884 40 H 0.046 0.954 41 H 0.114 0.886 42 H 0.095 0.905 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 11.722 -6.233 10.876 17.162 hybrid contribution -1.870 0.396 -0.544 1.988 sum 9.852 -5.837 10.332 15.423 Atomic orbital electron populations 1.81075 1.15422 1.11716 1.10539 1.29582 0.95737 0.90302 0.91119 1.18573 0.79523 1.00924 0.95815 1.21693 1.05664 0.91499 0.95568 1.23903 0.79543 0.88600 0.79265 1.90568 1.32472 1.65763 1.53758 1.86416 1.66979 1.34887 1.38412 1.21262 0.92034 0.75091 0.93221 1.21057 0.92091 1.24313 1.18285 0.94341 1.25495 1.00753 0.94032 0.96194 1.70106 1.37148 1.23923 1.20637 0.86013 0.82393 0.77887 0.78193 1.18191 1.21024 1.21531 1.22960 0.98945 0.95235 0.97442 1.22479 1.01895 0.95294 0.95448 1.23459 0.99908 0.98302 0.97106 1.21816 1.03109 0.97138 0.93064 1.21569 0.98782 0.99128 0.96457 1.21552 1.02522 0.92527 0.98321 1.21617 0.99163 1.00657 0.94764 1.21743 1.04194 0.90559 0.97400 0.87478 0.82033 0.92877 0.90179 0.93548 0.91298 0.88764 0.94021 0.89795 0.86160 0.92798 0.95973 0.90285 0.91602 0.88411 0.95435 0.88588 0.90544 0.85125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -23.64 18.54 20.01 0.37 -23.27 16 2 C 0.25 9.52 9.20 89.44 0.82 10.35 16 3 C 0.06 1.44 0.49 -53.99 -0.03 1.41 16 4 C -0.11 -3.01 4.86 29.85 0.15 -2.86 16 5 C 0.44 19.11 6.90 71.24 0.49 19.60 16 6 O -0.54 -26.63 11.10 21.98 0.24 -26.38 16 7 O -0.35 -16.90 9.44 -51.41 -0.49 -17.38 16 8 C 0.22 10.81 0.52 -11.01 -0.01 10.80 16 9 C -0.52 -29.86 6.98 25.60 0.18 -29.69 16 10 H 0.04 2.35 7.81 -2.91 -0.02 2.32 16 11 C 0.04 2.21 5.43 84.65 0.46 2.67 16 12 N -0.88 -50.93 12.71 21.45 0.27 -50.66 16 13 Si 0.93 47.07 29.54 68.60 2.03 49.10 16 14 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 15 H -0.28 -14.26 7.11 99.48 0.71 -13.56 16 16 H -0.29 -15.37 7.11 99.48 0.71 -14.66 16 17 C -0.11 -4.69 7.51 31.18 0.23 -4.46 16 18 C -0.11 -4.26 7.81 31.18 0.24 -4.01 16 19 C -0.15 -6.29 6.64 31.12 0.21 -6.09 16 20 C -0.11 -2.67 4.45 30.60 0.14 -2.54 16 21 C -0.12 -2.65 5.70 30.60 0.17 -2.47 16 22 C -0.11 -1.66 5.92 30.60 0.18 -1.48 16 23 C -0.12 -2.05 5.70 30.59 0.17 -1.88 16 24 C -0.10 -1.62 4.71 30.59 0.14 -1.48 16 25 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 26 H 0.16 2.92 8.14 -2.39 -0.02 2.90 16 27 H 0.26 14.49 8.32 -92.71 -0.77 13.72 16 28 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 29 H 0.05 2.21 8.09 -2.39 -0.02 2.19 16 30 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.09 2.76 8.14 -2.38 -0.02 2.74 16 32 H 0.04 1.89 8.09 -2.39 -0.02 1.87 16 33 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 34 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.05 1.74 5.96 -2.39 -0.01 1.73 16 36 H 0.02 0.63 7.23 -2.39 -0.02 0.62 16 37 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.03 0.63 7.23 -2.39 -0.02 0.62 16 41 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 43 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -78.39 344.04 6.98 -71.42 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 0.99 Total: 9.30 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 3.56 Total: -12.12 kcal Atomic # 7 Polarization: -74.57 SS G_CDS: 0.64 Total: -73.92 kcal Atomic # 8 Polarization: -43.53 SS G_CDS: -0.24 Total: -43.77 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -78.39 6.98 -71.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525423769.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.347 kcal (2) G-P(sol) polarization free energy of solvation -78.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.05 seconds