Wall clock time and date at job start Tue Mar 31 2020 06:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46930 * 2 1 4 4 C 1.50696 * 109.47300 * 240.00105 * 2 1 3 5 5 O 1.21284 * 120.00096 * 239.99841 * 4 2 1 6 6 N 1.34774 * 119.99838 * 59.99778 * 4 2 1 7 7 C 1.46506 * 120.00072 * 180.02562 * 6 4 2 8 8 C 1.52997 * 109.47289 * 180.02562 * 7 6 4 9 9 C 1.53002 * 109.46817 * 299.99814 * 8 7 6 10 10 C 1.52997 * 109.47232 * 60.00053 * 8 7 6 11 11 C 1.50696 * 109.47242 * 180.02562 * 8 7 6 12 12 H 1.08004 * 119.99967 * 359.97438 * 11 8 7 13 13 C 1.37875 * 120.00542 * 179.97438 * 11 8 7 14 14 N 1.31516 * 119.99408 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 120.00405 * 179.97438 * 13 11 8 16 16 H 1.48495 * 109.47216 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47057 * 120.00167 * 15 13 11 18 18 H 1.48497 * 109.47025 * 240.00141 * 15 13 11 19 19 N 1.46499 * 109.47125 * 119.99785 * 2 1 3 20 20 C 1.34698 * 126.73409 * 35.00603 * 19 2 1 21 21 N 1.30524 * 108.34697 * 179.97438 * 20 19 2 22 22 C 1.34182 * 109.79596 * 359.97438 * 21 20 19 23 23 C 1.43204 * 125.66938 * 180.02562 * 22 21 20 24 24 N 6.04812 * 125.67340 * 105.71021 * 2 1 3 25 25 N 1.31722 * 108.65603 * 359.76108 * 22 21 20 26 26 H 1.09002 * 109.47067 * 299.99917 * 1 2 3 27 27 H 1.09000 * 109.47312 * 59.99944 * 1 2 3 28 28 H 1.09004 * 109.46930 * 179.97438 * 1 2 3 29 29 H 0.97001 * 120.00676 * 359.97438 * 6 4 2 30 30 H 1.09001 * 109.47060 * 300.00359 * 7 6 4 31 31 H 1.09004 * 109.47073 * 59.99848 * 7 6 4 32 32 H 1.09002 * 109.47070 * 60.00180 * 9 8 7 33 33 H 1.09000 * 109.46986 * 180.02562 * 9 8 7 34 34 H 1.08996 * 109.47407 * 299.99780 * 9 8 7 35 35 H 1.08998 * 109.47624 * 59.99682 * 10 8 7 36 36 H 1.09000 * 109.47140 * 180.02562 * 10 8 7 37 37 H 1.09002 * 109.46777 * 299.99578 * 10 8 7 38 38 H 0.96999 * 119.99910 * 179.97438 * 14 13 11 39 39 H 1.08001 * 125.82610 * 359.97438 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7297 -1.6964 -1.1192 6 7 1.7068 -0.2499 -2.4545 7 6 2.1947 -0.9408 -3.6507 8 6 1.6853 -0.2191 -4.9000 9 6 0.1553 -0.2181 -4.9000 10 6 2.1963 1.2230 -4.8999 11 6 2.1866 -0.9301 -6.1304 12 1 2.8070 -1.8087 -6.0313 13 6 1.8535 -0.4592 -7.3827 14 7 1.0985 0.6109 -7.5033 15 14 2.4756 -1.3402 -8.9079 16 1 3.2997 -2.5075 -8.5038 17 1 1.3202 -1.8066 -9.7160 18 1 3.3007 -0.4072 -9.7165 19 7 2.0184 -0.6906 1.1962 20 6 1.4533 -1.7540 1.7996 21 7 2.1844 -2.0774 2.8314 22 6 3.2318 -1.2440 2.9253 23 6 4.2496 -1.2921 3.9316 24 7 5.0571 -1.3304 4.7297 25 7 3.1712 -0.3778 1.9348 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.1488 0.5385 -2.5436 30 1 3.2847 -0.9412 -3.6509 31 1 1.8310 -1.9684 -3.6506 32 1 -0.2078 0.2960 -4.0100 33 1 -0.2077 0.2957 -5.7902 34 1 -0.2088 -1.2454 -4.9001 35 1 3.2863 1.2223 -4.8998 36 1 1.8330 1.7373 -5.7896 37 1 1.8332 1.7370 -4.0099 38 1 0.8644 0.9425 -8.3843 39 1 0.5495 -2.2537 1.4837 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001583480182.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:13 Heat of formation + Delta-G solvation = 89.006318 kcal Electronic energy + Delta-G solvation = -22720.183212 eV Core-core repulsion = 19279.639263 eV Total energy + Delta-G solvation = -3440.543949 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.60051 -39.78396 -36.98829 -36.61678 -35.21973 -33.58279 -31.96779 -31.28513 -30.36254 -26.21986 -25.87728 -25.60324 -25.08515 -24.00611 -22.36867 -20.39148 -19.10519 -18.76718 -17.66054 -17.18209 -16.06992 -15.74630 -15.52889 -15.42408 -14.86386 -14.68064 -13.96176 -13.79421 -13.52641 -13.32072 -13.16716 -13.03820 -12.95603 -12.75214 -12.68199 -12.34769 -11.93018 -11.52572 -11.33096 -10.98757 -10.76268 -10.64098 -10.53979 -10.53230 -10.30144 -10.16863 -9.79404 -9.71932 -9.38986 -8.91727 -8.72106 -8.47779 -6.13388 -4.23674 0.80333 1.52547 1.87963 2.21864 2.54410 3.04563 3.20362 3.24627 3.27914 3.30087 3.35818 4.03852 4.20545 4.30767 4.40504 4.58283 4.83880 4.99529 5.11344 5.14136 5.44772 5.51113 5.72951 6.01074 6.13734 6.25843 6.33574 6.53752 6.65131 6.73285 6.77280 6.86019 7.00418 7.19727 7.41157 7.48411 7.57306 7.68640 7.87583 7.99549 8.21480 8.31213 8.77059 9.43146 10.88107 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.032604 B = 0.003059 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.574489 B = 9151.465854 C = 9510.461341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.132 3.868 3 H 0.136 0.864 4 C 0.493 3.507 5 O -0.532 6.532 6 N -0.705 5.705 7 C 0.132 3.868 8 C 0.057 3.943 9 C -0.131 4.131 10 C -0.133 4.133 11 C -0.508 4.508 12 H 0.058 0.942 13 C 0.067 3.933 14 N -0.885 5.885 15 Si 0.893 3.107 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 N -0.344 5.344 20 C 0.287 3.713 21 N -0.511 5.511 22 C 0.293 3.707 23 C 0.315 3.685 24 N -0.368 5.368 25 N -0.249 5.249 26 H 0.083 0.917 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.400 0.600 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.006 0.994 33 H 0.087 0.913 34 H 0.028 0.972 35 H 0.027 0.973 36 H 0.087 0.913 37 H 0.006 0.994 38 H 0.260 0.740 39 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.129 1.843 13.410 14.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.026 3.974 3 H 0.154 0.846 4 C 0.275 3.725 5 O -0.409 6.409 6 N -0.356 5.356 7 C 0.010 3.990 8 C 0.056 3.944 9 C -0.189 4.189 10 C -0.190 4.190 11 C -0.546 4.546 12 H 0.076 0.924 13 C -0.134 4.134 14 N -0.524 5.524 15 Si 0.721 3.279 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 N -0.134 5.134 20 C -0.010 4.010 21 N -0.239 5.239 22 C 0.011 3.989 23 C -0.005 4.005 24 N -0.047 5.047 25 N -0.081 5.081 26 H 0.102 0.898 27 H 0.117 0.883 28 H 0.096 0.904 29 H 0.236 0.764 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.025 0.975 33 H 0.105 0.895 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.105 0.895 37 H 0.025 0.975 38 H 0.070 0.930 39 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -4.069 1.510 14.537 15.171 hybrid contribution -0.437 -0.097 -1.590 1.652 sum -4.506 1.414 12.947 13.781 Atomic orbital electron populations 1.22222 0.89514 1.04930 1.05471 1.21515 0.96754 0.98360 0.80801 0.84625 1.20353 0.81839 0.85504 0.84822 1.90776 1.37589 1.26117 1.86422 1.46266 1.52097 1.31720 1.05493 1.21838 0.98443 0.95875 0.82875 1.18368 0.92864 0.92767 0.90416 1.21847 0.97642 0.99274 1.00155 1.21854 0.98738 0.98273 1.00163 1.20996 1.31665 1.12163 0.89800 0.92354 1.24869 0.94764 0.94888 0.98910 1.69796 1.36639 1.22658 1.23287 0.86511 0.78692 0.79784 0.82901 1.19732 1.20999 1.21004 1.50202 1.17363 1.24317 1.21567 1.26013 0.99083 0.87275 0.88581 1.70590 1.05390 1.26838 1.21041 1.18072 0.93343 0.94352 0.93131 1.22897 0.91585 0.94240 0.91731 1.81294 1.08377 1.06443 1.08613 1.78470 1.02037 1.22114 1.05466 0.89837 0.88265 0.90356 0.76376 0.92411 0.92303 0.97542 0.89469 0.95313 0.95333 0.89452 0.97532 0.92956 0.75436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.83 8.75 37.16 0.33 -0.50 16 2 C 0.13 1.19 3.77 -69.08 -0.26 0.93 16 3 H 0.14 1.02 8.14 -51.93 -0.42 0.60 16 4 C 0.49 6.75 7.22 -10.99 -0.08 6.67 16 5 O -0.53 -9.75 16.42 5.55 0.09 -9.66 16 6 N -0.70 -9.96 4.85 -60.29 -0.29 -10.25 16 7 C 0.13 2.46 4.50 -4.04 -0.02 2.44 16 8 C 0.06 1.18 0.50 -155.66 -0.08 1.10 16 9 C -0.13 -2.61 8.08 37.16 0.30 -2.31 16 10 C -0.13 -2.71 8.08 37.16 0.30 -2.41 16 11 C -0.51 -12.46 8.01 -34.44 -0.28 -12.74 16 12 H 0.06 1.46 7.74 -52.48 -0.41 1.06 16 13 C 0.07 1.67 5.15 -17.82 -0.09 1.58 16 14 N -0.89 -22.29 9.35 55.43 0.52 -21.77 16 15 Si 0.89 19.86 29.54 -169.99 -5.02 14.84 16 16 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 N -0.34 -3.77 3.04 -57.25 -0.17 -3.94 16 20 C 0.29 2.79 11.75 -90.67 -1.07 1.72 16 21 N -0.51 -6.23 11.22 -13.78 -0.15 -6.38 16 22 C 0.29 3.82 7.82 -158.51 -1.24 2.58 16 23 C 0.32 4.12 16.01 -22.47 -0.36 3.76 16 24 N -0.37 -5.11 18.54 41.84 0.78 -4.33 16 25 N -0.25 -3.31 12.75 30.96 0.39 -2.92 16 26 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.10 0.43 7.56 -51.93 -0.39 0.04 16 28 H 0.08 0.35 7.21 -51.93 -0.37 -0.02 16 29 H 0.40 4.75 5.58 -40.82 -0.23 4.52 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.01 0.09 6.86 -51.93 -0.36 -0.26 16 33 H 0.09 1.98 6.07 -51.93 -0.32 1.66 16 34 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.09 2.02 6.07 -51.93 -0.32 1.70 16 37 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 38 H 0.26 6.35 8.31 -40.82 -0.34 6.01 16 39 H 0.23 1.18 7.31 -52.49 -0.38 0.79 16 LS Contribution 335.09 15.07 5.05 5.05 Total: -1.00 -30.44 335.09 -6.15 -36.59 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -4.80 Total: -0.06 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -2.54 Total: 2.83 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: 1.07 Total: -49.59 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.44 -6.15 -36.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583480182.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.597 kcal (2) G-P(sol) polarization free energy of solvation -30.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds