Wall clock time and date at job start Tue Mar 31 2020 06:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46930 * 2 1 4 4 C 1.50696 * 109.47300 * 240.00105 * 2 1 3 5 5 O 1.21284 * 120.00096 * 239.99841 * 4 2 1 6 6 N 1.34774 * 119.99838 * 59.99778 * 4 2 1 7 7 C 1.46506 * 120.00072 * 180.02562 * 6 4 2 8 8 C 1.52997 * 109.47289 * 180.02562 * 7 6 4 9 9 C 1.53002 * 109.46817 * 299.99814 * 8 7 6 10 10 C 1.52997 * 109.47232 * 60.00053 * 8 7 6 11 11 C 1.50696 * 109.47242 * 180.02562 * 8 7 6 12 12 H 1.08004 * 119.99967 * 359.97438 * 11 8 7 13 13 C 1.37875 * 120.00542 * 179.97438 * 11 8 7 14 14 N 1.31516 * 119.99408 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 120.00405 * 179.97438 * 13 11 8 16 16 H 1.48495 * 109.47216 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47057 * 120.00167 * 15 13 11 18 18 H 1.48497 * 109.47025 * 240.00141 * 15 13 11 19 19 N 1.46499 * 109.47125 * 119.99785 * 2 1 3 20 20 C 1.34698 * 126.73409 * 35.00603 * 19 2 1 21 21 N 1.30524 * 108.34697 * 179.97438 * 20 19 2 22 22 C 1.34182 * 109.79596 * 359.97438 * 21 20 19 23 23 C 1.43204 * 125.66938 * 180.02562 * 22 21 20 24 24 N 6.04812 * 125.67340 * 105.71021 * 2 1 3 25 25 N 1.31722 * 108.65603 * 359.76108 * 22 21 20 26 26 H 1.09002 * 109.47067 * 299.99917 * 1 2 3 27 27 H 1.09000 * 109.47312 * 59.99944 * 1 2 3 28 28 H 1.09004 * 109.46930 * 179.97438 * 1 2 3 29 29 H 0.97001 * 120.00676 * 359.97438 * 6 4 2 30 30 H 1.09001 * 109.47060 * 300.00359 * 7 6 4 31 31 H 1.09004 * 109.47073 * 59.99848 * 7 6 4 32 32 H 1.09002 * 109.47070 * 60.00180 * 9 8 7 33 33 H 1.09000 * 109.46986 * 180.02562 * 9 8 7 34 34 H 1.08996 * 109.47407 * 299.99780 * 9 8 7 35 35 H 1.08998 * 109.47624 * 59.99682 * 10 8 7 36 36 H 1.09000 * 109.47140 * 180.02562 * 10 8 7 37 37 H 1.09002 * 109.46777 * 299.99578 * 10 8 7 38 38 H 0.96999 * 119.99910 * 179.97438 * 14 13 11 39 39 H 1.08001 * 125.82610 * 359.97438 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7297 -1.6964 -1.1192 6 7 1.7068 -0.2499 -2.4545 7 6 2.1947 -0.9408 -3.6507 8 6 1.6853 -0.2191 -4.9000 9 6 0.1553 -0.2181 -4.9000 10 6 2.1963 1.2230 -4.8999 11 6 2.1866 -0.9301 -6.1304 12 1 2.8070 -1.8087 -6.0313 13 6 1.8535 -0.4592 -7.3827 14 7 1.0985 0.6109 -7.5033 15 14 2.4756 -1.3402 -8.9079 16 1 3.2997 -2.5075 -8.5038 17 1 1.3202 -1.8066 -9.7160 18 1 3.3007 -0.4072 -9.7165 19 7 2.0184 -0.6906 1.1962 20 6 1.4533 -1.7540 1.7996 21 7 2.1844 -2.0774 2.8314 22 6 3.2318 -1.2440 2.9253 23 6 4.2496 -1.2921 3.9316 24 7 5.0571 -1.3304 4.7297 25 7 3.1712 -0.3778 1.9348 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.1488 0.5385 -2.5436 30 1 3.2847 -0.9412 -3.6509 31 1 1.8310 -1.9684 -3.6506 32 1 -0.2078 0.2960 -4.0100 33 1 -0.2077 0.2957 -5.7902 34 1 -0.2088 -1.2454 -4.9001 35 1 3.2863 1.2223 -4.8998 36 1 1.8330 1.7373 -5.7896 37 1 1.8332 1.7370 -4.0099 38 1 0.8644 0.9425 -8.3843 39 1 0.5495 -2.2537 1.4837 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001583480182.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:12 Heat of formation + Delta-G solvation = 70.143348 kcal Electronic energy + Delta-G solvation = -22721.001172 eV Core-core repulsion = 19279.639263 eV Total energy + Delta-G solvation = -3441.361909 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.45681 -40.94806 -38.25605 -37.91653 -36.09479 -35.07126 -32.93521 -32.73685 -31.29451 -27.54241 -27.49345 -27.02173 -26.25362 -24.99481 -23.31183 -21.43507 -20.63630 -19.78592 -18.74247 -18.05134 -17.72509 -16.86538 -16.58245 -16.52626 -16.35183 -15.87507 -15.16174 -14.87061 -14.76011 -14.59655 -14.39589 -14.20939 -13.97985 -13.76201 -13.44324 -13.31283 -13.16020 -13.06837 -12.68727 -12.57609 -12.52962 -12.21744 -12.12841 -11.60614 -11.44925 -11.43134 -11.23616 -11.08207 -10.70391 -10.55496 -10.38582 -10.01096 -8.02092 -6.16712 -0.12868 0.70189 1.04062 1.23293 1.40792 1.46577 1.48625 1.54348 2.09777 2.25259 2.28931 2.48301 3.22314 3.32039 3.59378 3.61868 3.83676 4.10074 4.42592 4.49051 4.53207 4.71156 4.74257 4.77343 4.88696 5.01975 5.10411 5.12678 5.22158 5.24960 5.34963 5.53628 5.58622 5.70014 5.72627 5.99313 6.21318 6.26140 6.46366 6.54238 6.63161 6.88193 7.18117 7.51364 8.96394 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.032604 B = 0.003059 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.574489 B = 9151.465854 C = 9510.461341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.141 3.859 3 H 0.156 0.844 4 C 0.495 3.505 5 O -0.582 6.582 6 N -0.695 5.695 7 C 0.150 3.850 8 C 0.052 3.948 9 C -0.122 4.122 10 C -0.124 4.124 11 C -0.528 4.528 12 H 0.041 0.959 13 C 0.031 3.969 14 N -0.896 5.896 15 Si 0.938 3.062 16 H -0.278 1.278 17 H -0.281 1.281 18 H -0.284 1.284 19 N -0.347 5.347 20 C 0.297 3.703 21 N -0.531 5.531 22 C 0.284 3.716 23 C 0.326 3.674 24 N -0.389 5.389 25 N -0.274 5.274 26 H 0.107 0.893 27 H 0.113 0.887 28 H 0.087 0.913 29 H 0.415 0.585 30 H 0.033 0.967 31 H 0.044 0.956 32 H 0.048 0.952 33 H 0.059 0.941 34 H 0.020 0.980 35 H 0.013 0.987 36 H 0.061 0.939 37 H 0.044 0.956 38 H 0.260 0.740 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.031 2.563 14.317 16.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.035 3.965 3 H 0.174 0.826 4 C 0.279 3.721 5 O -0.462 6.462 6 N -0.347 5.347 7 C 0.026 3.974 8 C 0.051 3.949 9 C -0.180 4.180 10 C -0.182 4.182 11 C -0.567 4.567 12 H 0.059 0.941 13 C -0.169 4.169 14 N -0.535 5.535 15 Si 0.766 3.234 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.210 1.210 19 N -0.138 5.138 20 C 0.002 3.998 21 N -0.260 5.260 22 C 0.002 3.998 23 C 0.007 3.993 24 N -0.068 5.068 25 N -0.106 5.106 26 H 0.126 0.874 27 H 0.132 0.868 28 H 0.106 0.894 29 H 0.254 0.746 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.040 0.960 35 H 0.033 0.967 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -5.997 2.264 15.447 16.724 hybrid contribution 0.153 -0.343 -1.895 1.932 sum -5.844 1.921 13.552 14.883 Atomic orbital electron populations 1.22358 0.85743 1.06283 1.07390 1.21710 0.99258 0.97930 0.77554 0.82649 1.21143 0.80455 0.84744 0.85710 1.90766 1.39676 1.28527 1.87187 1.45980 1.52258 1.31901 1.04594 1.21281 0.96835 0.95337 0.83979 1.18351 0.93721 0.92807 0.89977 1.21679 0.96457 0.98991 1.00848 1.21710 0.97775 0.97983 1.00756 1.21317 1.31554 1.12028 0.91764 0.94062 1.25365 0.95215 0.95575 1.00720 1.69892 1.37030 1.23102 1.23478 0.85815 0.78155 0.78753 0.80709 1.20253 1.20692 1.21018 1.50372 1.16748 1.24877 1.21777 1.26893 0.99436 0.86270 0.87227 1.70590 1.05635 1.27257 1.22485 1.18090 0.93663 0.94824 0.93180 1.22970 0.91325 0.93580 0.91454 1.81290 1.08997 1.07211 1.09310 1.78391 1.03457 1.22855 1.05946 0.87380 0.86840 0.89375 0.74645 0.94871 0.93734 0.93320 0.92202 0.96039 0.96733 0.92010 0.93679 0.93071 0.71197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.81 8.75 71.98 0.63 -0.18 16 2 C 0.14 2.04 3.77 44.24 0.17 2.21 16 3 H 0.16 1.70 8.14 -2.38 -0.02 1.68 16 4 C 0.49 12.41 7.22 87.66 0.63 13.04 16 5 O -0.58 -20.78 16.42 -3.04 -0.05 -20.83 16 6 N -0.70 -17.93 4.85 -463.05 -2.25 -20.18 16 7 C 0.15 5.49 4.50 86.38 0.39 5.88 16 8 C 0.05 2.14 0.50 -52.93 -0.03 2.11 16 9 C -0.12 -4.63 8.08 71.98 0.58 -4.05 16 10 C -0.12 -4.94 8.08 71.98 0.58 -4.36 16 11 C -0.53 -26.23 8.01 25.60 0.21 -26.02 16 12 H 0.04 2.13 7.74 -2.91 -0.02 2.11 16 13 C 0.03 1.56 5.15 84.65 0.44 2.00 16 14 N -0.90 -45.14 9.35 21.45 0.20 -44.94 16 15 Si 0.94 41.01 29.54 68.60 2.03 43.04 16 16 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 17 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 18 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 19 N -0.35 -6.69 3.04 -335.03 -1.02 -7.71 16 20 C 0.30 4.91 11.75 180.37 2.12 7.03 16 21 N -0.53 -12.07 11.22 -197.52 -2.22 -14.29 16 22 C 0.28 7.18 7.82 135.87 1.06 8.24 16 23 C 0.33 8.48 16.01 88.33 1.41 9.89 16 24 N -0.39 -10.79 18.54 19.00 0.35 -10.43 16 25 N -0.27 -6.92 12.75 -55.97 -0.71 -7.63 16 26 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 27 H 0.11 0.34 7.56 -2.39 -0.02 0.33 16 28 H 0.09 0.33 7.21 -2.38 -0.02 0.31 16 29 H 0.41 8.18 5.58 -92.71 -0.52 7.66 16 30 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 32 H 0.05 1.39 6.86 -2.39 -0.02 1.37 16 33 H 0.06 2.64 6.07 -2.39 -0.01 2.63 16 34 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.06 2.80 6.07 -2.39 -0.01 2.79 16 37 H 0.04 1.39 6.86 -2.39 -0.02 1.38 16 38 H 0.26 12.66 8.31 -92.71 -0.77 11.89 16 39 H 0.27 1.61 7.31 -2.91 -0.02 1.59 16 Total: -1.00 -68.56 335.09 5.10 -63.46 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: 0.58 Total: 3.72 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 8.19 Total: 15.78 kcal Atomic # 7 Polarization: -99.53 SS G_CDS: -5.64 Total: -105.17 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.05 Total: -20.83 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Total: -68.56 5.10 -63.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583480182.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.606 kcal (2) G-P(sol) polarization free energy of solvation -68.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds