Wall clock time and date at job start Tue Mar 31 2020 06:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 O 1.21283 * 120.00261 * 120.00003 * 4 2 1 6 6 N 1.34777 * 120.00075 * 300.00543 * 4 2 1 7 7 C 1.46500 * 120.00084 * 180.02562 * 6 4 2 8 8 C 1.52996 * 109.47249 * 179.97438 * 7 6 4 9 9 C 1.53002 * 109.46972 * 299.99946 * 8 7 6 10 10 C 1.52997 * 109.47131 * 59.99486 * 8 7 6 11 11 C 1.50697 * 109.47240 * 179.97438 * 8 7 6 12 12 H 1.07998 * 120.00039 * 359.97438 * 11 8 7 13 13 C 1.37880 * 119.99815 * 179.97438 * 11 8 7 14 14 N 1.31515 * 120.00246 * 359.97438 * 13 11 8 15 15 Si 1.86805 * 119.99777 * 179.97438 * 13 11 8 16 16 H 1.48494 * 109.46914 * 60.00126 * 15 13 11 17 17 H 1.48496 * 109.47069 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47008 * 299.99829 * 15 13 11 19 19 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 20 20 C 1.34695 * 126.73239 * 324.71654 * 19 2 1 21 21 N 1.30518 * 108.34847 * 179.83112 * 20 19 2 22 22 C 1.34187 * 109.79781 * 0.43616 * 21 20 19 23 23 C 1.43202 * 125.67676 * 179.74663 * 22 21 20 24 24 N 6.04817 * 125.64985 * 254.32305 * 2 1 3 25 25 N 1.31726 * 108.64890 * 359.72768 * 22 21 20 26 26 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 29 29 H 0.96996 * 119.99636 * 359.97438 * 6 4 2 30 30 H 1.09001 * 109.47049 * 299.99628 * 7 6 4 31 31 H 1.09000 * 109.47381 * 59.99594 * 7 6 4 32 32 H 1.08996 * 109.47407 * 59.99513 * 9 8 7 33 33 H 1.09002 * 109.47070 * 179.97438 * 9 8 7 34 34 H 1.09000 * 109.46986 * 299.99742 * 9 8 7 35 35 H 1.08998 * 109.47533 * 60.00505 * 10 8 7 36 36 H 1.09002 * 109.47153 * 180.02562 * 10 8 7 37 37 H 1.09001 * 109.47502 * 299.99847 * 10 8 7 38 38 H 0.97001 * 120.00170 * 180.02562 * 14 13 11 39 39 H 1.08002 * 125.82579 * 359.97438 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -1.6965 1.1191 6 7 1.7068 -0.2501 2.4545 7 6 2.1956 -0.9404 3.6507 8 6 1.6860 -0.2190 4.8999 9 6 2.1958 1.2236 4.8994 10 6 0.1560 -0.2191 4.9005 11 6 2.1884 -0.9294 6.1303 12 1 2.8087 -1.8079 6.0312 13 6 1.8560 -0.4579 7.3826 14 7 1.1010 0.6122 7.5034 15 14 2.4782 -1.3390 8.9078 16 1 3.9631 -1.3404 8.9075 17 1 1.9836 -0.6387 10.1203 18 1 1.9817 -2.7385 8.9080 19 7 2.0184 -0.6906 -1.1962 20 6 1.4561 -1.7572 -1.7967 21 7 2.1838 -2.0768 -2.8319 22 6 3.2312 -1.2432 -2.9261 23 6 4.2483 -1.2905 -3.9331 24 7 5.0550 -1.3280 -4.7319 25 7 3.1678 -0.3740 -1.9384 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.1493 0.5387 2.5435 30 1 1.8328 -1.9682 3.6508 31 1 3.2856 -0.9399 3.6505 32 1 1.8322 1.7372 4.0095 33 1 1.8324 1.7377 5.7892 34 1 3.2858 1.2237 4.8991 35 1 -0.2073 -1.2467 4.9008 36 1 -0.2070 0.2953 5.7903 37 1 -0.2077 0.2946 4.0105 38 1 0.8675 0.9441 8.3844 39 1 0.5554 -2.2604 -1.4774 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001583480183.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:15 Heat of formation + Delta-G solvation = 89.081802 kcal Electronic energy + Delta-G solvation = -22719.884713 eV Core-core repulsion = 19279.344037 eV Total energy + Delta-G solvation = -3440.540676 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.60080 -39.78449 -36.98892 -36.61619 -35.21901 -33.58193 -31.96760 -31.28444 -30.36259 -26.21906 -25.87530 -25.60158 -25.08275 -24.00498 -22.37035 -20.39149 -19.10489 -18.76725 -17.65764 -17.18030 -16.06633 -15.74499 -15.52775 -15.42298 -14.86726 -14.68174 -13.96203 -13.79511 -13.52783 -13.31929 -13.16824 -13.03536 -12.95638 -12.75180 -12.68057 -12.34586 -11.92978 -11.51961 -11.31539 -10.95490 -10.82634 -10.63622 -10.54081 -10.52936 -10.30165 -10.16736 -9.78965 -9.72221 -9.38713 -8.93365 -8.71960 -8.46930 -6.12898 -4.23430 0.80288 1.52641 1.87985 2.21816 2.54365 3.04633 3.23492 3.24598 3.27574 3.28333 3.34410 4.03979 4.20667 4.30862 4.40537 4.58305 4.83884 4.99662 5.11341 5.14375 5.44855 5.51155 5.72970 6.01128 6.13804 6.25859 6.33689 6.53792 6.65234 6.73431 6.77339 6.86177 7.00403 7.19785 7.41331 7.48431 7.57219 7.68573 7.87715 7.99550 8.21571 8.31257 8.76759 9.43244 10.88487 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.032613 B = 0.003059 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.340704 B = 9152.605697 C = 9510.949333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.132 3.868 3 H 0.136 0.864 4 C 0.493 3.507 5 O -0.532 6.532 6 N -0.704 5.704 7 C 0.132 3.868 8 C 0.057 3.943 9 C -0.133 4.133 10 C -0.131 4.131 11 C -0.510 4.510 12 H 0.057 0.943 13 C 0.068 3.932 14 N -0.886 5.886 15 Si 0.894 3.106 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 N -0.344 5.344 20 C 0.287 3.713 21 N -0.511 5.511 22 C 0.293 3.707 23 C 0.315 3.685 24 N -0.368 5.368 25 N -0.249 5.249 26 H 0.099 0.901 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.400 0.600 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.006 0.994 33 H 0.087 0.913 34 H 0.027 0.973 35 H 0.028 0.972 36 H 0.087 0.913 37 H 0.006 0.994 38 H 0.262 0.738 39 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.131 1.844 -13.368 14.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.026 3.974 3 H 0.154 0.846 4 C 0.275 3.725 5 O -0.409 6.409 6 N -0.356 5.356 7 C 0.010 3.990 8 C 0.057 3.943 9 C -0.190 4.190 10 C -0.189 4.189 11 C -0.548 4.548 12 H 0.075 0.925 13 C -0.134 4.134 14 N -0.524 5.524 15 Si 0.722 3.278 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 N -0.135 5.135 20 C -0.009 4.009 21 N -0.239 5.239 22 C 0.011 3.989 23 C -0.005 4.005 24 N -0.047 5.047 25 N -0.081 5.081 26 H 0.117 0.883 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.236 0.764 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.025 0.975 33 H 0.106 0.894 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.105 0.895 37 H 0.025 0.975 38 H 0.072 0.928 39 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -4.085 1.526 -14.497 15.139 hybrid contribution -0.418 -0.119 1.581 1.639 sum -4.504 1.407 -12.916 13.751 Atomic orbital electron populations 1.22222 0.89519 1.04927 1.05466 1.21514 0.96753 0.98367 0.80793 0.84619 1.20354 0.81834 0.85509 0.84823 1.90776 1.37592 1.26119 1.86422 1.46264 1.52099 1.31714 1.05491 1.21837 0.98428 0.95890 0.82881 1.18355 0.92852 0.92752 0.90379 1.21857 0.98741 0.98279 1.00163 1.21847 0.97649 0.99267 1.00149 1.20920 1.31832 1.12222 0.89831 0.92459 1.24864 0.94742 0.94876 0.98878 1.69774 1.36514 1.22597 1.23503 0.86623 0.79303 0.79805 0.82102 1.20239 1.21266 1.20235 1.50203 1.17649 1.24067 1.21533 1.26010 0.99086 0.87320 0.88517 1.70590 1.05410 1.26999 1.20869 1.18072 0.93328 0.94323 0.93167 1.22894 0.91595 0.94241 0.91721 1.81292 1.08386 1.06442 1.08606 1.78469 1.02131 1.21999 1.05504 0.88262 0.90360 0.89847 0.76376 0.92300 0.92414 0.97538 0.89441 0.95337 0.95309 0.89483 0.97548 0.92833 0.75438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.83 8.75 37.16 0.33 -0.51 16 2 C 0.13 1.20 3.76 -69.08 -0.26 0.94 16 3 H 0.14 1.02 8.14 -51.93 -0.42 0.60 16 4 C 0.49 6.75 7.22 -10.99 -0.08 6.67 16 5 O -0.53 -9.74 16.42 5.55 0.09 -9.65 16 6 N -0.70 -9.96 4.85 -60.30 -0.29 -10.25 16 7 C 0.13 2.45 4.50 -4.04 -0.02 2.44 16 8 C 0.06 1.20 0.50 -155.66 -0.08 1.12 16 9 C -0.13 -2.71 8.08 37.16 0.30 -2.41 16 10 C -0.13 -2.61 8.08 37.16 0.30 -2.31 16 11 C -0.51 -12.52 8.01 -34.44 -0.28 -12.79 16 12 H 0.06 1.43 7.74 -52.49 -0.41 1.02 16 13 C 0.07 1.70 5.15 -17.82 -0.09 1.60 16 14 N -0.89 -22.30 9.35 55.43 0.52 -21.78 16 15 Si 0.89 19.87 29.54 -169.99 -5.02 14.85 16 16 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 17 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 19 N -0.34 -3.77 3.04 -57.25 -0.17 -3.94 16 20 C 0.29 2.79 11.75 -90.68 -1.07 1.73 16 21 N -0.51 -6.23 11.22 -13.78 -0.15 -6.38 16 22 C 0.29 3.83 7.82 -158.50 -1.24 2.59 16 23 C 0.32 4.12 16.01 -22.47 -0.36 3.76 16 24 N -0.37 -5.11 18.54 41.84 0.78 -4.33 16 25 N -0.25 -3.31 12.75 30.96 0.39 -2.92 16 26 H 0.10 0.44 7.56 -51.93 -0.39 0.04 16 27 H 0.08 0.35 7.21 -51.93 -0.37 -0.02 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.40 4.75 5.58 -40.82 -0.23 4.52 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 33 H 0.09 2.02 6.07 -51.93 -0.32 1.70 16 34 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.09 1.97 6.07 -51.93 -0.32 1.66 16 37 H 0.01 0.09 6.86 -51.93 -0.36 -0.26 16 38 H 0.26 6.42 8.31 -40.82 -0.34 6.08 16 39 H 0.23 1.18 7.31 -52.49 -0.38 0.80 16 LS Contribution 335.09 15.07 5.05 5.05 Total: -1.00 -30.38 335.09 -6.15 -36.53 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -4.80 Total: 0.02 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -2.54 Total: 2.81 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: 1.07 Total: -49.61 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.65 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.38 -6.15 -36.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583480183.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.611 kcal (2) G-P(sol) polarization free energy of solvation -30.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds