Wall clock time and date at job start Tue Mar 31 2020 06:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 O 1.21283 * 120.00261 * 120.00003 * 4 2 1 6 6 N 1.34777 * 120.00075 * 300.00543 * 4 2 1 7 7 C 1.46500 * 120.00084 * 180.02562 * 6 4 2 8 8 C 1.52996 * 109.47249 * 179.97438 * 7 6 4 9 9 C 1.53002 * 109.46972 * 299.99946 * 8 7 6 10 10 C 1.52997 * 109.47131 * 59.99486 * 8 7 6 11 11 C 1.50697 * 109.47240 * 179.97438 * 8 7 6 12 12 H 1.07998 * 120.00039 * 359.97438 * 11 8 7 13 13 C 1.37880 * 119.99815 * 179.97438 * 11 8 7 14 14 N 1.31515 * 120.00246 * 359.97438 * 13 11 8 15 15 Si 1.86805 * 119.99777 * 179.97438 * 13 11 8 16 16 H 1.48494 * 109.46914 * 60.00126 * 15 13 11 17 17 H 1.48496 * 109.47069 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47008 * 299.99829 * 15 13 11 19 19 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 20 20 C 1.34695 * 126.73239 * 324.71654 * 19 2 1 21 21 N 1.30518 * 108.34847 * 179.83112 * 20 19 2 22 22 C 1.34187 * 109.79781 * 0.43616 * 21 20 19 23 23 C 1.43202 * 125.67676 * 179.74663 * 22 21 20 24 24 N 6.04817 * 125.64985 * 254.32305 * 2 1 3 25 25 N 1.31726 * 108.64890 * 359.72768 * 22 21 20 26 26 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 29 29 H 0.96996 * 119.99636 * 359.97438 * 6 4 2 30 30 H 1.09001 * 109.47049 * 299.99628 * 7 6 4 31 31 H 1.09000 * 109.47381 * 59.99594 * 7 6 4 32 32 H 1.08996 * 109.47407 * 59.99513 * 9 8 7 33 33 H 1.09002 * 109.47070 * 179.97438 * 9 8 7 34 34 H 1.09000 * 109.46986 * 299.99742 * 9 8 7 35 35 H 1.08998 * 109.47533 * 60.00505 * 10 8 7 36 36 H 1.09002 * 109.47153 * 180.02562 * 10 8 7 37 37 H 1.09001 * 109.47502 * 299.99847 * 10 8 7 38 38 H 0.97001 * 120.00170 * 180.02562 * 14 13 11 39 39 H 1.08002 * 125.82579 * 359.97438 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -1.6965 1.1191 6 7 1.7068 -0.2501 2.4545 7 6 2.1956 -0.9404 3.6507 8 6 1.6860 -0.2190 4.8999 9 6 2.1958 1.2236 4.8994 10 6 0.1560 -0.2191 4.9005 11 6 2.1884 -0.9294 6.1303 12 1 2.8087 -1.8079 6.0312 13 6 1.8560 -0.4579 7.3826 14 7 1.1010 0.6122 7.5034 15 14 2.4782 -1.3390 8.9078 16 1 3.9631 -1.3404 8.9075 17 1 1.9836 -0.6387 10.1203 18 1 1.9817 -2.7385 8.9080 19 7 2.0184 -0.6906 -1.1962 20 6 1.4561 -1.7572 -1.7967 21 7 2.1838 -2.0768 -2.8319 22 6 3.2312 -1.2432 -2.9261 23 6 4.2483 -1.2905 -3.9331 24 7 5.0550 -1.3280 -4.7319 25 7 3.1678 -0.3740 -1.9384 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.1493 0.5387 2.5435 30 1 1.8328 -1.9682 3.6508 31 1 3.2856 -0.9399 3.6505 32 1 1.8322 1.7372 4.0095 33 1 1.8324 1.7377 5.7892 34 1 3.2858 1.2237 4.8991 35 1 -0.2073 -1.2467 4.9008 36 1 -0.2070 0.2953 5.7903 37 1 -0.2077 0.2946 4.0105 38 1 0.8675 0.9441 8.3844 39 1 0.5554 -2.2604 -1.4774 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001583480183.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:15 Heat of formation + Delta-G solvation = 70.285270 kcal Electronic energy + Delta-G solvation = -22720.699792 eV Core-core repulsion = 19279.344037 eV Total energy + Delta-G solvation = -3441.355755 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.45768 -40.94838 -38.25516 -37.91730 -36.09440 -35.07003 -32.93479 -32.73666 -31.29556 -27.54118 -27.49222 -27.01825 -26.25359 -24.99352 -23.31422 -21.43512 -20.63475 -19.78785 -18.73956 -18.05028 -17.71663 -16.86495 -16.58357 -16.52896 -16.35162 -15.87564 -15.16366 -14.87077 -14.75320 -14.59732 -14.39587 -14.21034 -13.97916 -13.76031 -13.44610 -13.31198 -13.15129 -13.05176 -12.67000 -12.62808 -12.52877 -12.21234 -12.12250 -11.60285 -11.44613 -11.43427 -11.23642 -11.08088 -10.71276 -10.55831 -10.37911 -10.01044 -8.01614 -6.16465 -0.12964 0.70210 1.04112 1.23128 1.43759 1.46507 1.48584 1.51673 2.09835 2.25313 2.28753 2.48486 3.22640 3.32027 3.59400 3.61835 3.83604 4.09995 4.42640 4.49041 4.53299 4.71041 4.74292 4.77370 4.88669 5.02020 5.10443 5.12736 5.22128 5.24985 5.34976 5.53543 5.58584 5.69786 5.72733 5.99284 6.21432 6.26190 6.46371 6.54215 6.63108 6.88058 7.18083 7.51454 8.96478 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.032613 B = 0.003059 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.340704 B = 9152.605697 C = 9510.949333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.141 3.859 3 H 0.156 0.844 4 C 0.495 3.505 5 O -0.582 6.582 6 N -0.695 5.695 7 C 0.149 3.851 8 C 0.053 3.947 9 C -0.125 4.125 10 C -0.122 4.122 11 C -0.531 4.531 12 H 0.041 0.959 13 C 0.032 3.968 14 N -0.896 5.896 15 Si 0.938 3.062 16 H -0.281 1.281 17 H -0.284 1.284 18 H -0.277 1.277 19 N -0.347 5.347 20 C 0.297 3.703 21 N -0.531 5.531 22 C 0.284 3.716 23 C 0.326 3.674 24 N -0.389 5.389 25 N -0.274 5.274 26 H 0.113 0.887 27 H 0.087 0.913 28 H 0.107 0.893 29 H 0.415 0.585 30 H 0.044 0.956 31 H 0.033 0.967 32 H 0.044 0.956 33 H 0.061 0.939 34 H 0.013 0.987 35 H 0.020 0.980 36 H 0.059 0.941 37 H 0.048 0.952 38 H 0.260 0.740 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.017 2.542 -14.276 16.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.036 3.964 3 H 0.174 0.826 4 C 0.280 3.720 5 O -0.461 6.461 6 N -0.347 5.347 7 C 0.026 3.974 8 C 0.052 3.948 9 C -0.182 4.182 10 C -0.180 4.180 11 C -0.569 4.569 12 H 0.060 0.940 13 C -0.168 4.168 14 N -0.535 5.535 15 Si 0.765 3.235 16 H -0.207 1.207 17 H -0.209 1.209 18 H -0.203 1.203 19 N -0.138 5.138 20 C 0.002 3.998 21 N -0.260 5.260 22 C 0.002 3.998 23 C 0.007 3.993 24 N -0.068 5.068 25 N -0.106 5.106 26 H 0.132 0.868 27 H 0.106 0.894 28 H 0.126 0.874 29 H 0.254 0.746 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.032 0.968 35 H 0.039 0.961 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -5.997 2.256 -15.409 16.688 hybrid contribution 0.168 -0.359 1.883 1.924 sum -5.829 1.897 -13.526 14.850 Atomic orbital electron populations 1.22357 0.85757 1.06279 1.07377 1.21709 0.99250 0.97937 0.77553 0.82649 1.21141 0.80453 0.84749 0.85706 1.90765 1.39671 1.28521 1.87185 1.45978 1.52260 1.31897 1.04595 1.21280 0.96826 0.95352 0.83978 1.18341 0.93704 0.92793 0.89956 1.21713 0.97762 0.97996 1.00760 1.21678 0.96472 0.98972 1.00846 1.21268 1.31735 1.12140 0.91786 0.94021 1.25363 0.95190 0.95561 1.00699 1.69876 1.36921 1.23052 1.23611 0.85936 0.78508 0.78984 0.80070 1.20655 1.20903 1.20274 1.50373 1.17038 1.24626 1.21739 1.26888 0.99423 0.86334 0.87178 1.70590 1.05650 1.27413 1.22308 1.18091 0.93650 0.94796 0.93220 1.22967 0.91334 0.93581 0.91444 1.81288 1.09006 1.07208 1.09301 1.78390 1.03538 1.22733 1.05985 0.86836 0.89377 0.87406 0.74649 0.93721 0.94866 0.93685 0.91992 0.96758 0.96051 0.92208 0.93329 0.93043 0.71214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.82 8.75 71.98 0.63 -0.19 16 2 C 0.14 2.04 3.76 44.24 0.17 2.21 16 3 H 0.16 1.71 8.14 -2.39 -0.02 1.69 16 4 C 0.49 12.40 7.22 87.66 0.63 13.03 16 5 O -0.58 -20.75 16.42 -3.04 -0.05 -20.80 16 6 N -0.70 -17.93 4.85 -463.07 -2.25 -20.18 16 7 C 0.15 5.49 4.50 86.38 0.39 5.88 16 8 C 0.05 2.17 0.50 -52.93 -0.03 2.14 16 9 C -0.12 -4.95 8.08 71.98 0.58 -4.37 16 10 C -0.12 -4.63 8.08 71.98 0.58 -4.05 16 11 C -0.53 -26.36 8.01 25.60 0.21 -26.16 16 12 H 0.04 2.14 7.74 -2.91 -0.02 2.11 16 13 C 0.03 1.60 5.15 84.66 0.44 2.04 16 14 N -0.90 -45.16 9.35 21.45 0.20 -44.96 16 15 Si 0.94 40.97 29.54 68.60 2.03 42.99 16 16 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 17 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 18 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 19 N -0.35 -6.69 3.04 -335.04 -1.02 -7.71 16 20 C 0.30 4.92 11.75 180.37 2.12 7.04 16 21 N -0.53 -12.07 11.22 -197.52 -2.22 -14.29 16 22 C 0.28 7.18 7.82 135.87 1.06 8.24 16 23 C 0.33 8.48 16.01 88.33 1.41 9.89 16 24 N -0.39 -10.78 18.54 19.00 0.35 -10.43 16 25 N -0.27 -6.91 12.75 -55.97 -0.71 -7.63 16 26 H 0.11 0.35 7.56 -2.39 -0.02 0.33 16 27 H 0.09 0.33 7.21 -2.39 -0.02 0.32 16 28 H 0.11 0.14 8.14 -2.38 -0.02 0.12 16 29 H 0.41 8.18 5.58 -92.71 -0.52 7.67 16 30 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 33 H 0.06 2.81 6.07 -2.39 -0.01 2.80 16 34 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.06 2.64 6.07 -2.39 -0.01 2.62 16 37 H 0.05 1.39 6.86 -2.39 -0.02 1.37 16 38 H 0.26 12.75 8.31 -92.71 -0.77 11.98 16 39 H 0.27 1.63 7.31 -2.91 -0.02 1.60 16 Total: -1.00 -68.39 335.09 5.10 -63.29 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: 0.58 Total: 4.00 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 8.19 Total: 15.70 kcal Atomic # 7 Polarization: -99.55 SS G_CDS: -5.64 Total: -105.19 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.05 Total: -20.80 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 42.99 kcal Total: -68.39 5.10 -63.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583480183.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.577 kcal (2) G-P(sol) polarization free energy of solvation -68.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds