Wall clock time and date at job start Tue Mar 31 2020 09:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99855 * 2 1 4 4 H 1.48497 * 109.47223 * 270.00089 * 3 2 1 5 5 H 1.48505 * 109.47073 * 29.99829 * 3 2 1 6 6 H 1.48502 * 109.47305 * 149.99773 * 3 2 1 7 7 C 1.37873 * 120.00237 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99824 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00039 * 0.02562 * 7 2 1 10 10 C 1.53042 * 109.45881 * 179.97438 * 9 7 2 11 11 C 1.53197 * 109.30901 * 178.61121 * 10 9 7 12 12 N 1.46924 * 108.77460 * 54.63240 * 11 10 9 13 13 C 1.34780 * 120.62422 * 126.36730 * 12 11 10 14 14 O 1.21280 * 120.00577 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.99601 * 179.97438 * 13 12 11 16 16 H 1.09005 * 110.46553 * 299.03653 * 15 13 12 17 17 C 1.54614 * 110.41350 * 61.45421 * 15 13 12 18 18 C 1.55987 * 104.46145 * 118.44396 * 17 15 13 19 19 H 1.09004 * 116.07448 * 161.71880 * 18 17 15 20 20 C 1.55958 * 104.30956 * 290.79323 * 18 17 15 21 21 C 1.52178 * 104.86869 * 70.38257 * 20 18 17 22 22 O 1.20756 * 127.33101 * 179.66165 * 21 20 18 23 23 C 1.53524 * 105.34066 * 359.69760 * 21 20 18 24 24 H 1.09004 * 115.83981 * 160.28765 * 23 21 20 25 25 C 1.56924 * 100.84124 * 34.04252 * 23 21 20 26 26 C 1.46919 * 118.74113 * 306.64243 * 12 11 10 27 27 C 1.52757 * 109.00931 * 53.30958 * 26 12 11 28 28 H 0.96997 * 119.99872 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.45611 * 299.96598 * 9 7 2 30 30 H 1.09002 * 109.50036 * 58.66338 * 10 9 7 31 31 H 1.08997 * 109.52572 * 298.57801 * 10 9 7 32 32 H 1.09001 * 109.58653 * 294.84325 * 11 10 9 33 33 H 1.08994 * 109.70086 * 174.49310 * 11 10 9 34 34 H 1.08993 * 110.43434 * 359.70324 * 17 15 13 35 35 H 1.08994 * 110.43641 * 237.18822 * 17 15 13 36 36 H 1.09000 * 110.36115 * 189.22863 * 20 18 17 37 37 H 1.08996 * 110.36070 * 311.43218 * 20 18 17 38 38 H 1.09007 * 112.08244 * 189.93885 * 25 23 21 39 39 H 1.09002 * 112.08630 * 63.25874 * 25 23 21 40 40 H 1.09001 * 109.58548 * 173.14253 * 26 12 11 41 41 H 1.08995 * 109.59038 * 293.56846 * 26 12 11 42 42 H 1.08999 * 109.56581 * 185.55068 * 27 26 12 43 43 H 1.09005 * 109.38851 * 65.51407 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2460 -3.6621 0.0005 11 6 1.4769 -4.9866 0.0356 12 7 0.5224 -5.0089 -1.0812 13 6 0.5122 -6.0348 -1.9552 14 8 1.2954 -6.9514 -1.8238 15 6 -0.4734 -6.0434 -3.0953 16 1 -1.4952 -6.0429 -2.7157 17 6 -0.2405 -4.8253 -4.0187 18 6 0.1252 -5.4487 -5.4010 19 1 0.0287 -4.7901 -6.2642 20 6 1.5314 -6.0849 -5.1770 21 6 1.2786 -7.2825 -4.2728 22 8 2.0943 -8.0667 -3.8510 23 6 -0.2342 -7.2821 -4.0116 24 1 -0.6578 -8.2270 -3.6709 25 6 -0.7703 -6.7383 -5.3825 26 6 -0.4164 -3.8887 -1.2305 27 6 0.3700 -2.5793 -1.2481 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5567 0.8907 30 1 2.8886 -3.5913 0.8781 31 1 2.8562 -3.6195 -0.9016 32 1 0.9376 -5.0711 0.9790 33 1 2.1738 -5.8188 -0.0627 34 1 0.5833 -4.2170 -3.6456 35 1 -1.1494 -4.2291 -4.0986 36 1 1.9563 -6.4098 -6.1268 37 1 2.1964 -5.3727 -4.6886 38 1 -1.8330 -6.4989 -5.3411 39 1 -0.5384 -7.4103 -6.2089 40 1 -0.9668 -3.9954 -2.1653 41 1 -1.1134 -3.8818 -0.3925 42 1 -0.3225 -1.7376 -1.2594 43 1 0.9975 -2.5460 -2.1389 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001638375860.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:55 Heat of formation + Delta-G solvation = -69.812406 kcal Electronic energy + Delta-G solvation = -24790.560209 eV Core-core repulsion = 21414.376955 eV Total energy + Delta-G solvation = -3376.183254 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -41.38169 -39.00054 -37.22679 -36.73550 -33.57707 -31.73023 -30.50668 -29.83981 -28.79684 -27.28213 -26.15019 -23.41528 -22.41720 -21.75348 -20.43308 -19.99500 -18.86145 -17.94954 -16.90682 -16.59317 -16.24479 -15.94785 -15.22420 -14.67122 -14.57523 -14.20928 -13.73362 -13.55310 -13.17833 -13.07792 -12.91128 -12.57333 -12.48834 -12.30066 -12.05935 -11.67829 -11.60728 -11.41935 -11.29130 -11.17140 -10.97040 -10.85094 -10.69000 -10.58669 -10.40349 -10.12519 -9.67286 -9.35279 -9.20520 -9.11153 -8.94628 -8.42221 -8.02495 -6.07511 -4.13467 2.26884 2.91873 3.25061 3.32484 3.36135 3.39611 4.08533 4.24918 4.28961 4.37444 4.57909 4.82777 4.86611 5.04449 5.14488 5.17293 5.22219 5.30732 5.53598 5.57960 5.62021 5.68052 5.76087 5.78566 5.85883 5.90681 5.95182 6.03235 6.05832 6.08650 6.13967 6.26937 6.43167 6.62530 6.86038 6.99741 7.10001 7.22452 7.61969 7.82560 7.87068 7.90560 7.99337 8.35917 8.52753 8.89944 9.51916 10.98005 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023751 B = 0.004588 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.629497 B = 6102.076818 C = 6463.073506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.511 4.511 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.122 4.122 11 C 0.111 3.889 12 N -0.596 5.596 13 C 0.503 3.497 14 O -0.541 6.541 15 C -0.103 4.103 16 H 0.107 0.893 17 C -0.120 4.120 18 C -0.095 4.095 19 H 0.114 0.886 20 C -0.183 4.183 21 C 0.375 3.625 22 O -0.420 6.420 23 C -0.135 4.135 24 H 0.114 0.886 25 C -0.119 4.119 26 C 0.096 3.904 27 C -0.123 4.123 28 H 0.260 0.740 29 H 0.027 0.973 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.105 0.895 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.448 -9.254 -10.465 14.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.161 4.161 11 C -0.011 4.011 12 N -0.329 5.329 13 C 0.290 3.710 14 O -0.419 6.419 15 C -0.124 4.124 16 H 0.126 0.874 17 C -0.158 4.158 18 C -0.113 4.113 19 H 0.132 0.868 20 C -0.221 4.221 21 C 0.247 3.753 22 O -0.290 6.290 23 C -0.154 4.154 24 H 0.132 0.868 25 C -0.157 4.157 26 C -0.025 4.025 27 C -0.161 4.161 28 H 0.070 0.930 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.123 0.877 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.723 -10.015 -10.118 15.000 hybrid contribution 0.312 1.214 0.176 1.266 sum -4.411 -8.801 -9.942 13.991 Atomic orbital electron populations 1.69830 1.05831 1.26470 1.51000 1.24944 0.94864 0.99016 0.95050 0.86626 0.79955 0.83524 0.78094 1.20730 1.21231 1.19965 1.21203 0.92952 0.90557 1.50232 0.92741 1.18634 0.92641 0.91716 0.94012 1.22000 0.98896 0.94220 1.00953 1.21698 0.91797 0.99712 0.87897 1.48196 1.36056 1.20896 1.27712 1.20566 0.84857 0.82252 0.83288 1.90786 1.41181 1.35777 1.74182 1.22297 1.00298 0.95800 0.94030 0.87448 1.22907 1.03418 0.95887 0.93581 1.23573 0.93615 0.96294 0.97820 0.86823 1.23225 0.99014 0.98653 1.01192 1.25028 0.90131 0.83603 0.76507 1.90376 1.53637 1.41057 1.43921 1.24028 0.96998 0.98439 0.95946 0.86810 1.23557 0.99947 0.96581 0.95583 1.22113 0.91862 0.87540 1.01031 1.21937 1.00069 0.94603 0.99523 0.92975 0.95472 0.92171 0.93068 0.92255 0.90397 0.89877 0.89760 0.88777 0.88650 0.89753 0.90491 0.90829 0.92086 0.87691 0.94306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.81 11.30 55.43 0.63 -23.19 16 2 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 3 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.51 -13.36 8.56 -34.44 -0.29 -13.65 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.05 1.12 2.07 -91.73 -0.19 0.94 16 10 C -0.12 -2.51 5.30 -26.61 -0.14 -2.65 16 11 C 0.11 2.06 6.44 -3.71 -0.02 2.04 16 12 N -0.60 -10.46 2.96 -173.04 -0.51 -10.97 16 13 C 0.50 8.62 6.47 -10.98 -0.07 8.55 16 14 O -0.54 -11.18 12.65 -17.09 -0.22 -11.40 16 15 C -0.10 -1.29 2.20 -89.36 -0.20 -1.49 16 16 H 0.11 1.14 8.01 -51.93 -0.42 0.73 16 17 C -0.12 -1.33 4.00 -24.29 -0.10 -1.43 16 18 C -0.09 -0.87 5.24 -85.27 -0.45 -1.31 16 19 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 20 C -0.18 -2.14 6.10 -25.57 -0.16 -2.29 16 21 C 0.38 5.64 5.27 -26.88 -0.14 5.50 16 22 O -0.42 -8.17 16.50 -16.64 -0.27 -8.45 16 23 C -0.13 -1.61 4.63 -86.66 -0.40 -2.01 16 24 H 0.11 1.32 8.14 -51.93 -0.42 0.89 16 25 C -0.12 -0.99 6.45 -22.43 -0.14 -1.14 16 26 C 0.10 1.62 5.57 -3.94 -0.02 1.60 16 27 C -0.12 -2.56 5.14 -26.84 -0.14 -2.70 16 28 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.08 1.49 7.00 -51.93 -0.36 1.12 16 34 H 0.08 1.13 6.43 -51.93 -0.33 0.80 16 35 H 0.08 0.79 7.62 -51.93 -0.40 0.39 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.10 1.25 7.84 -51.93 -0.41 0.84 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 1.02 4.35 -51.93 -0.23 0.79 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.11 2.45 6.03 -51.93 -0.31 2.13 16 43 H 0.04 0.82 7.72 -51.93 -0.40 0.42 16 LS Contribution 325.47 15.07 4.90 4.90 Total: -1.00 -31.02 325.47 -9.68 -40.70 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -6.62 Total: 1.45 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -2.56 Total: -8.52 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 0.12 Total: -34.16 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.49 Total: -19.84 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.02 -9.68 -40.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638375860.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.115 kcal (2) G-P(sol) polarization free energy of solvation -31.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds