Wall clock time and date at job start Tue Mar 31 2020 09:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99855 * 2 1 4 4 H 1.48497 * 109.47223 * 270.00089 * 3 2 1 5 5 H 1.48505 * 109.47073 * 29.99829 * 3 2 1 6 6 H 1.48502 * 109.47305 * 149.99773 * 3 2 1 7 7 C 1.37873 * 120.00237 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99824 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00039 * 0.02562 * 7 2 1 10 10 C 1.53042 * 109.45881 * 179.97438 * 9 7 2 11 11 C 1.53197 * 109.30901 * 178.61121 * 10 9 7 12 12 N 1.46924 * 108.77460 * 54.63240 * 11 10 9 13 13 C 1.34780 * 120.62422 * 126.36730 * 12 11 10 14 14 O 1.21280 * 120.00577 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.99601 * 179.97438 * 13 12 11 16 16 H 1.09005 * 110.46553 * 299.03653 * 15 13 12 17 17 C 1.54614 * 110.41350 * 61.45421 * 15 13 12 18 18 C 1.55987 * 104.46145 * 118.44396 * 17 15 13 19 19 H 1.09004 * 116.07448 * 161.71880 * 18 17 15 20 20 C 1.55958 * 104.30956 * 290.79323 * 18 17 15 21 21 C 1.52178 * 104.86869 * 70.38257 * 20 18 17 22 22 O 1.20756 * 127.33101 * 179.66165 * 21 20 18 23 23 C 1.53524 * 105.34066 * 359.69760 * 21 20 18 24 24 H 1.09004 * 115.83981 * 160.28765 * 23 21 20 25 25 C 1.56924 * 100.84124 * 34.04252 * 23 21 20 26 26 C 1.46919 * 118.74113 * 306.64243 * 12 11 10 27 27 C 1.52757 * 109.00931 * 53.30958 * 26 12 11 28 28 H 0.96997 * 119.99872 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.45611 * 299.96598 * 9 7 2 30 30 H 1.09002 * 109.50036 * 58.66338 * 10 9 7 31 31 H 1.08997 * 109.52572 * 298.57801 * 10 9 7 32 32 H 1.09001 * 109.58653 * 294.84325 * 11 10 9 33 33 H 1.08994 * 109.70086 * 174.49310 * 11 10 9 34 34 H 1.08993 * 110.43434 * 359.70324 * 17 15 13 35 35 H 1.08994 * 110.43641 * 237.18822 * 17 15 13 36 36 H 1.09000 * 110.36115 * 189.22863 * 20 18 17 37 37 H 1.08996 * 110.36070 * 311.43218 * 20 18 17 38 38 H 1.09007 * 112.08244 * 189.93885 * 25 23 21 39 39 H 1.09002 * 112.08630 * 63.25874 * 25 23 21 40 40 H 1.09001 * 109.58548 * 173.14253 * 26 12 11 41 41 H 1.08995 * 109.59038 * 293.56846 * 26 12 11 42 42 H 1.08999 * 109.56581 * 185.55068 * 27 26 12 43 43 H 1.09005 * 109.38851 * 65.51407 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2460 -3.6621 0.0005 11 6 1.4769 -4.9866 0.0356 12 7 0.5224 -5.0089 -1.0812 13 6 0.5122 -6.0348 -1.9552 14 8 1.2954 -6.9514 -1.8238 15 6 -0.4734 -6.0434 -3.0953 16 1 -1.4952 -6.0429 -2.7157 17 6 -0.2405 -4.8253 -4.0187 18 6 0.1252 -5.4487 -5.4010 19 1 0.0287 -4.7901 -6.2642 20 6 1.5314 -6.0849 -5.1770 21 6 1.2786 -7.2825 -4.2728 22 8 2.0943 -8.0667 -3.8510 23 6 -0.2342 -7.2821 -4.0116 24 1 -0.6578 -8.2270 -3.6709 25 6 -0.7703 -6.7383 -5.3825 26 6 -0.4164 -3.8887 -1.2305 27 6 0.3700 -2.5793 -1.2481 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5567 0.8907 30 1 2.8886 -3.5913 0.8781 31 1 2.8562 -3.6195 -0.9016 32 1 0.9376 -5.0711 0.9790 33 1 2.1738 -5.8188 -0.0627 34 1 0.5833 -4.2170 -3.6456 35 1 -1.1494 -4.2291 -4.0986 36 1 1.9563 -6.4098 -6.1268 37 1 2.1964 -5.3727 -4.6886 38 1 -1.8330 -6.4989 -5.3411 39 1 -0.5384 -7.4103 -6.2089 40 1 -0.9668 -3.9954 -2.1653 41 1 -1.1134 -3.8818 -0.3925 42 1 -0.3225 -1.7376 -1.2594 43 1 0.9975 -2.5460 -2.1389 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001638375860.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:54 Heat of formation + Delta-G solvation = -86.530024 kcal Electronic energy + Delta-G solvation = -24791.285139 eV Core-core repulsion = 21414.376955 eV Total energy + Delta-G solvation = -3376.908184 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.45812 -40.35465 -38.44194 -38.25896 -35.36029 -33.33855 -32.04587 -31.04275 -29.73177 -28.38506 -27.73186 -25.00441 -23.96369 -22.99718 -21.58601 -21.14240 -20.16432 -19.27178 -18.44006 -17.91832 -17.55133 -17.21809 -16.55829 -16.32735 -16.03242 -15.50302 -15.02091 -14.76567 -14.66930 -14.59841 -14.39134 -13.98891 -13.77031 -13.48235 -13.37288 -13.06982 -12.96499 -12.80395 -12.46986 -12.45869 -12.29312 -12.17265 -12.03620 -11.90220 -11.64534 -11.54387 -11.35769 -11.03172 -10.90180 -10.62308 -10.38792 -10.18554 -9.55742 -8.07926 -6.20726 1.14780 1.41253 1.43993 1.52358 1.59039 2.05984 2.44346 3.12654 3.18660 3.36307 3.42669 3.60582 3.79888 3.97600 4.12386 4.14831 4.22891 4.24842 4.31196 4.39558 4.45056 4.51177 4.56458 4.72949 4.76539 4.80866 4.82451 4.92300 4.96297 5.04243 5.09152 5.15069 5.17391 5.21163 5.29085 5.33173 5.42127 5.54358 5.65711 5.98367 6.14604 6.39442 6.50729 6.73674 6.87337 7.16544 7.46848 8.95539 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023751 B = 0.004588 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.629497 B = 6102.076818 C = 6463.073506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.946 3.054 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.277 1.277 7 C -0.536 4.536 8 H 0.042 0.958 9 C 0.046 3.954 10 C -0.112 4.112 11 C 0.116 3.884 12 N -0.600 5.600 13 C 0.496 3.504 14 O -0.581 6.581 15 C -0.100 4.100 16 H 0.139 0.861 17 C -0.124 4.124 18 C -0.077 4.077 19 H 0.148 0.852 20 C -0.187 4.187 21 C 0.359 3.641 22 O -0.481 6.481 23 C -0.139 4.139 24 H 0.114 0.886 25 C -0.100 4.100 26 C 0.108 3.892 27 C -0.111 4.111 28 H 0.263 0.737 29 H 0.003 0.997 30 H 0.058 0.942 31 H 0.037 0.963 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.073 0.927 38 H 0.116 0.884 39 H 0.092 0.908 40 H 0.113 0.887 41 H 0.064 0.936 42 H 0.084 0.916 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.761 -8.741 -12.631 17.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.176 4.176 3 Si 0.772 3.228 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.202 1.202 7 C -0.574 4.574 8 H 0.061 0.939 9 C 0.027 3.973 10 C -0.150 4.150 11 C -0.007 4.007 12 N -0.332 5.332 13 C 0.286 3.714 14 O -0.462 6.462 15 C -0.121 4.121 16 H 0.157 0.843 17 C -0.161 4.161 18 C -0.095 4.095 19 H 0.165 0.835 20 C -0.225 4.225 21 C 0.235 3.765 22 O -0.355 6.355 23 C -0.159 4.159 24 H 0.132 0.868 25 C -0.137 4.137 26 C -0.013 4.013 27 C -0.150 4.150 28 H 0.072 0.928 29 H 0.021 0.979 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.134 0.866 36 H 0.132 0.868 37 H 0.091 0.909 38 H 0.134 0.866 39 H 0.111 0.889 40 H 0.131 0.869 41 H 0.082 0.918 42 H 0.102 0.898 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -7.063 -9.484 -12.300 17.062 hybrid contribution 1.100 1.054 0.898 1.769 sum -5.963 -8.430 -11.402 15.382 Atomic orbital electron populations 1.69924 1.06621 1.27186 1.51034 1.25554 0.95689 1.01639 0.94745 0.85751 0.78682 0.80137 0.78216 1.20081 1.20709 1.20219 1.21491 0.92715 0.92320 1.50909 0.93935 1.18608 0.92971 0.91545 0.94162 1.21838 0.98384 0.94564 1.00217 1.21520 0.92065 0.97942 0.89142 1.48257 1.35896 1.21460 1.27566 1.21499 0.85049 0.81117 0.83758 1.90786 1.43022 1.37232 1.75129 1.22443 1.00127 0.97008 0.92480 0.84283 1.22977 1.03799 0.95125 0.94239 1.23674 0.91318 0.96800 0.97709 0.83469 1.23315 1.01010 0.97028 1.01111 1.25944 0.91587 0.83373 0.75570 1.90339 1.55510 1.43414 1.46208 1.24137 0.94819 0.98528 0.98387 0.86803 1.23590 1.01291 0.95587 0.93242 1.22032 0.91055 0.85030 1.03214 1.21679 0.99335 0.96243 0.97718 0.92792 0.97929 0.92316 0.94378 0.91303 0.91264 0.92810 0.86637 0.86776 0.90855 0.86567 0.88941 0.86947 0.91797 0.89768 0.95088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.49 11.30 21.45 0.24 -48.25 16 2 C 0.02 1.22 5.30 84.65 0.45 1.66 16 3 Si 0.95 42.03 29.54 68.60 2.03 44.06 16 4 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.54 -28.64 8.56 25.60 0.22 -28.42 16 8 H 0.04 2.31 7.74 -2.91 -0.02 2.28 16 9 C 0.05 2.17 2.07 -11.51 -0.02 2.15 16 10 C -0.11 -4.73 5.30 30.67 0.16 -4.57 16 11 C 0.12 4.41 6.44 86.36 0.56 4.96 16 12 N -0.60 -20.79 2.96 -819.77 -2.42 -23.22 16 13 C 0.50 16.71 6.47 87.66 0.57 17.28 16 14 O -0.58 -24.63 12.65 18.62 0.24 -24.39 16 15 C -0.10 -2.21 2.20 -9.98 -0.02 -2.24 16 16 H 0.14 2.28 8.01 -2.38 -0.02 2.26 16 17 C -0.12 -2.29 4.00 32.18 0.13 -2.16 16 18 C -0.08 -1.07 5.24 -7.33 -0.04 -1.11 16 19 H 0.15 1.20 8.14 -2.38 -0.02 1.18 16 20 C -0.19 -4.10 6.10 31.35 0.19 -3.91 16 21 C 0.36 10.71 5.27 30.50 0.16 10.87 16 22 O -0.48 -19.55 16.50 20.21 0.33 -19.22 16 23 C -0.14 -2.98 4.63 -8.23 -0.04 -3.02 16 24 H 0.11 2.42 8.14 -2.38 -0.02 2.40 16 25 C -0.10 -1.15 6.45 33.38 0.22 -0.94 16 26 C 0.11 3.47 5.57 86.22 0.48 3.95 16 27 C -0.11 -4.63 5.14 30.53 0.16 -4.47 16 28 H 0.26 13.36 8.31 -92.71 -0.77 12.59 16 29 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 30 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.07 2.75 7.00 -2.39 -0.02 2.73 16 34 H 0.05 1.36 6.43 -2.39 -0.02 1.34 16 35 H 0.12 1.48 7.62 -2.39 -0.02 1.46 16 36 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.07 1.95 7.84 -2.39 -0.02 1.93 16 38 H 0.12 0.74 8.14 -2.38 -0.02 0.72 16 39 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.11 2.72 4.35 -2.39 -0.01 2.71 16 41 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.08 3.91 6.03 -2.39 -0.01 3.89 16 43 H 0.03 1.31 7.72 -2.38 -0.02 1.29 16 Total: -1.00 -71.60 325.47 4.58 -67.02 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 1.00 Total: 13.96 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: 3.16 Total: -9.96 kcal Atomic # 7 Polarization: -69.29 SS G_CDS: -2.18 Total: -71.47 kcal Atomic # 8 Polarization: -44.18 SS G_CDS: 0.57 Total: -43.61 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -71.60 4.58 -67.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638375860.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.509 kcal (2) G-P(sol) polarization free energy of solvation -71.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds