Wall clock time and date at job start Tue Mar 31 2020 09:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 120.00109 * 2 1 4 4 H 1.48499 * 109.47056 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.46880 * 119.99986 * 3 2 1 6 6 H 1.48497 * 109.47101 * 239.99833 * 3 2 1 7 7 C 1.37880 * 119.99871 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99764 * 342.32629 * 7 2 1 9 9 C 1.50697 * 120.00173 * 162.32871 * 7 2 1 10 10 C 1.53039 * 109.46136 * 294.51566 * 9 7 2 11 11 C 1.53190 * 109.31434 * 178.61381 * 10 9 7 12 12 N 1.46921 * 108.77635 * 54.63669 * 11 10 9 13 13 C 1.34777 * 120.63565 * 126.41253 * 12 11 10 14 14 O 1.21285 * 120.00193 * 179.97438 * 13 12 11 15 15 C 1.50698 * 119.99471 * 359.97438 * 13 12 11 16 16 H 1.08993 * 110.36885 * 57.64892 * 15 13 12 17 17 C 1.54605 * 110.41741 * 295.15987 * 15 13 12 18 18 C 1.55970 * 104.46830 * 240.89832 * 17 15 13 19 19 H 1.09001 * 116.70666 * 161.25376 * 18 17 15 20 20 C 1.55965 * 104.30588 * 290.79476 * 18 17 15 21 21 C 1.52168 * 104.87354 * 70.38167 * 20 18 17 22 22 O 1.20754 * 127.33322 * 179.67574 * 21 20 18 23 23 C 1.53523 * 105.34058 * 359.69871 * 21 20 18 24 24 H 1.09000 * 115.84396 * 161.08369 * 23 21 20 25 25 C 1.56926 * 100.84547 * 34.04221 * 23 21 20 26 26 C 1.46934 * 118.73534 * 306.39180 * 12 11 10 27 27 C 1.53035 * 109.45995 * 174.44330 * 9 7 2 28 28 H 0.96999 * 120.00541 * 174.64198 * 1 2 3 29 29 H 1.08999 * 109.45774 * 54.47063 * 9 7 2 30 30 H 1.09002 * 109.49470 * 298.56823 * 10 9 7 31 31 H 1.09002 * 109.49636 * 58.65763 * 10 9 7 32 32 H 1.08994 * 109.58552 * 294.84334 * 11 10 9 33 33 H 1.09001 * 109.58279 * 174.41971 * 11 10 9 34 34 H 1.09002 * 110.43212 * 359.64487 * 17 15 13 35 35 H 1.08996 * 110.43582 * 122.14436 * 17 15 13 36 36 H 1.09000 * 110.35669 * 311.53001 * 20 18 17 37 37 H 1.09006 * 110.44760 * 189.27632 * 20 18 17 38 38 H 1.09000 * 112.08633 * 63.25386 * 25 23 21 39 39 H 1.08993 * 112.08611 * 189.94324 * 25 23 21 40 40 H 1.09007 * 109.58454 * 293.82185 * 26 12 11 41 41 H 1.09002 * 109.58445 * 173.40044 * 26 12 11 42 42 H 1.09004 * 109.50331 * 301.33830 * 27 9 7 43 43 H 1.09005 * 109.49829 * 61.44044 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1028 1.6963 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 1.5026 -2.1074 0.2830 9 6 3.4581 -1.2248 -0.3967 10 6 3.5926 -0.8421 -1.8724 11 6 5.0740 -0.8407 -2.2625 12 7 5.6537 -2.1473 -1.9227 13 6 6.3125 -2.8687 -2.8511 14 8 6.7870 -3.9457 -2.5580 15 6 6.4595 -2.3371 -4.2536 16 1 6.9574 -1.3676 -4.2415 17 6 5.0768 -2.2277 -4.9366 18 6 5.1760 -3.1755 -6.1712 19 1 4.2355 -3.4991 -6.6172 20 6 6.1783 -2.4591 -7.1276 21 6 7.5304 -2.5837 -6.4408 22 8 8.5939 -2.1711 -6.8370 23 6 7.2550 -3.3461 -5.1370 24 1 8.1215 -3.8100 -4.6657 25 6 6.1007 -4.3058 -5.5944 26 6 5.5021 -2.6522 -0.5512 27 6 4.0159 -2.6333 -0.1802 28 1 -0.4851 -0.8363 -0.0784 29 1 4.0160 -0.5154 0.2144 30 1 3.0554 -1.5653 -2.4861 31 1 3.1738 0.1518 -2.0301 32 1 5.5953 -0.0559 -1.7145 33 1 5.1694 -0.6662 -3.3342 34 1 4.2907 -2.5642 -4.2605 35 1 4.8909 -1.2027 -5.2574 36 1 5.9073 -1.4097 -7.2439 37 1 6.1989 -2.9546 -8.0983 38 1 6.4282 -5.0016 -6.3669 39 1 5.6399 -4.8227 -4.7527 40 1 6.0584 -2.0151 0.1364 41 1 5.8802 -3.6730 -0.4938 42 1 3.8985 -2.9143 0.8664 43 1 3.4748 -3.3397 -0.8100 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001638375861.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:01:04 Heat of formation + Delta-G solvation = -74.536460 kcal Electronic energy + Delta-G solvation = -24449.446212 eV Core-core repulsion = 21073.058108 eV Total energy + Delta-G solvation = -3376.388104 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.47335 -39.49101 -37.68708 -36.89452 -33.68004 -31.91429 -30.98967 -30.06656 -28.98217 -27.33488 -26.27964 -23.48988 -22.59374 -21.89597 -20.61452 -19.84792 -18.90046 -18.20170 -17.62386 -17.21674 -16.70776 -15.84977 -15.49245 -14.98092 -14.80846 -14.27580 -14.01494 -13.79734 -13.54863 -13.44142 -13.11015 -12.91840 -12.77546 -12.59518 -12.12525 -11.98610 -11.69563 -11.62339 -11.38224 -11.23169 -10.98392 -10.93309 -10.85598 -10.63325 -10.37187 -10.14883 -9.79089 -9.70781 -9.49584 -9.39576 -8.88583 -8.40824 -8.23008 -6.48987 -4.12865 1.66634 2.73972 3.20039 3.27670 3.37464 3.54468 3.79016 4.09967 4.11319 4.39427 4.43553 4.64751 4.69596 4.81668 4.92455 5.03444 5.13956 5.18630 5.33233 5.38264 5.44541 5.54515 5.55834 5.63037 5.70767 5.74013 5.79164 5.86231 5.87008 5.91439 5.95402 5.96204 6.20631 6.26545 6.58752 6.66467 6.75011 6.85933 7.18771 7.24881 7.42384 7.66518 8.07246 8.32324 8.33005 8.83770 9.55192 10.87543 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023055 B = 0.004528 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.199305 B = 6182.628008 C = 6566.372542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.032 3.968 3 Si 1.041 2.959 4 H -0.287 1.287 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.598 4.598 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.136 4.136 11 C 0.095 3.905 12 N -0.599 5.599 13 C 0.524 3.476 14 O -0.549 6.549 15 C -0.105 4.105 16 H 0.098 0.902 17 C -0.119 4.119 18 C -0.095 4.095 19 H 0.116 0.884 20 C -0.179 4.179 21 C 0.368 3.632 22 O -0.444 6.444 23 C -0.130 4.130 24 H 0.122 0.878 25 C -0.117 4.117 26 C 0.108 3.892 27 C -0.112 4.112 28 H 0.268 0.732 29 H 0.021 0.979 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.061 0.939 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.092 -3.720 -12.129 16.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.173 4.173 3 Si 0.870 3.130 4 H -0.213 1.213 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.636 4.636 8 H 0.073 0.927 9 C 0.002 3.998 10 C -0.174 4.174 11 C -0.027 4.027 12 N -0.331 5.331 13 C 0.311 3.689 14 O -0.428 6.428 15 C -0.126 4.126 16 H 0.116 0.884 17 C -0.157 4.157 18 C -0.113 4.113 19 H 0.134 0.866 20 C -0.217 4.217 21 C 0.243 3.757 22 O -0.316 6.316 23 C -0.150 4.150 24 H 0.140 0.860 25 C -0.154 4.154 26 C -0.014 4.014 27 C -0.151 4.151 28 H 0.078 0.922 29 H 0.039 0.961 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.095 0.905 39 H 0.108 0.892 40 H 0.080 0.920 41 H 0.100 0.900 42 H 0.083 0.917 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.689 -2.395 -12.089 16.986 hybrid contribution 0.027 -1.505 0.074 1.507 sum 11.716 -3.900 -12.014 17.229 Atomic orbital electron populations 1.70826 1.07227 1.30506 1.45430 1.25753 0.96080 1.02370 0.93087 0.84115 0.75473 0.76238 0.77164 1.21291 1.21052 1.20072 1.21983 0.94603 0.96398 1.50611 0.92697 1.18953 0.97474 0.92193 0.91211 1.22477 0.91680 1.02490 1.00774 1.22101 0.96687 0.83616 1.00324 1.48121 1.53729 1.20185 1.11059 1.20196 0.77910 0.84640 0.86143 1.90652 1.49286 1.21718 1.81131 1.22228 0.97899 0.99828 0.92648 0.88361 1.22856 0.95359 1.00528 0.96958 1.23602 0.97892 0.95230 0.94621 0.86556 1.23206 0.94646 1.03378 1.00427 1.25643 0.89119 0.73912 0.87046 1.90405 1.30612 1.41265 1.69303 1.24037 0.99936 0.96483 0.94529 0.85962 1.23575 0.94490 0.96254 1.01102 1.21782 0.98532 0.99877 0.81163 1.21832 0.92421 1.00024 1.00785 0.92198 0.96058 0.92310 0.90858 0.91860 0.90533 0.89658 0.89968 0.88146 0.88290 0.90522 0.89197 0.92031 0.89954 0.91694 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.76 13.69 55.43 0.76 -26.01 16 2 C 0.03 0.88 5.32 -17.82 -0.09 0.78 16 3 Si 1.04 23.56 26.35 -169.99 -4.48 19.08 16 4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.27 -5.48 5.63 56.52 0.32 -5.16 16 7 C -0.60 -15.81 8.82 -34.44 -0.30 -16.11 16 8 H 0.05 1.59 7.99 -52.49 -0.42 1.17 16 9 C 0.02 0.45 1.65 -91.73 -0.15 0.30 16 10 C -0.14 -2.56 5.05 -26.61 -0.13 -2.69 16 11 C 0.10 1.43 5.80 -3.71 -0.02 1.40 16 12 N -0.60 -9.42 2.97 -172.77 -0.51 -9.93 16 13 C 0.52 7.95 6.61 -10.99 -0.07 7.88 16 14 O -0.55 -9.80 14.96 5.55 0.08 -9.71 16 15 C -0.10 -1.23 1.76 -89.36 -0.16 -1.38 16 16 H 0.10 1.07 7.75 -51.93 -0.40 0.67 16 17 C -0.12 -1.20 4.13 -24.30 -0.10 -1.30 16 18 C -0.10 -0.78 5.25 -85.27 -0.45 -1.23 16 19 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 20 C -0.18 -1.42 6.10 -25.57 -0.16 -1.57 16 21 C 0.37 4.05 7.14 -26.88 -0.19 3.86 16 22 O -0.44 -6.33 17.99 6.00 0.11 -6.22 16 23 C -0.13 -1.47 3.99 -86.66 -0.35 -1.82 16 24 H 0.12 1.53 7.85 -51.93 -0.41 1.12 16 25 C -0.12 -1.14 6.31 -22.43 -0.14 -1.28 16 26 C 0.11 1.80 6.43 -3.71 -0.02 1.77 16 27 C -0.11 -2.14 5.30 -26.61 -0.14 -2.28 16 28 H 0.27 7.92 8.73 -40.82 -0.36 7.56 16 29 H 0.02 0.47 6.80 -51.93 -0.35 0.11 16 30 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 31 H 0.07 1.45 4.80 -51.93 -0.25 1.20 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.08 0.94 4.51 -51.93 -0.23 0.70 16 34 H 0.08 1.02 7.38 -51.93 -0.38 0.63 16 35 H 0.08 0.71 7.37 -51.93 -0.38 0.32 16 36 H 0.10 0.71 7.84 -51.93 -0.41 0.30 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 1.04 7.64 -51.93 -0.40 0.64 16 40 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 41 H 0.08 1.37 7.01 -51.93 -0.36 1.01 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 326.21 15.07 4.92 4.92 Total: -1.00 -31.10 326.21 -8.22 -39.32 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -6.61 Total: 2.23 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -2.48 Total: -13.68 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.25 Total: -35.94 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: 0.19 Total: -15.93 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -4.48 Total: 19.08 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.10 -8.22 -39.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638375861.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.216 kcal (2) G-P(sol) polarization free energy of solvation -31.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds