Wall clock time and date at job start Tue Mar 31 2020 09:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 120.00109 * 2 1 4 4 H 1.48499 * 109.47056 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.46880 * 119.99986 * 3 2 1 6 6 H 1.48497 * 109.47101 * 239.99833 * 3 2 1 7 7 C 1.37880 * 119.99871 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99764 * 342.32629 * 7 2 1 9 9 C 1.50697 * 120.00173 * 162.32871 * 7 2 1 10 10 C 1.53039 * 109.46136 * 294.51566 * 9 7 2 11 11 C 1.53190 * 109.31434 * 178.61381 * 10 9 7 12 12 N 1.46921 * 108.77635 * 54.63669 * 11 10 9 13 13 C 1.34777 * 120.63565 * 126.41253 * 12 11 10 14 14 O 1.21285 * 120.00193 * 179.97438 * 13 12 11 15 15 C 1.50698 * 119.99471 * 359.97438 * 13 12 11 16 16 H 1.08993 * 110.36885 * 57.64892 * 15 13 12 17 17 C 1.54605 * 110.41741 * 295.15987 * 15 13 12 18 18 C 1.55970 * 104.46830 * 240.89832 * 17 15 13 19 19 H 1.09001 * 116.70666 * 161.25376 * 18 17 15 20 20 C 1.55965 * 104.30588 * 290.79476 * 18 17 15 21 21 C 1.52168 * 104.87354 * 70.38167 * 20 18 17 22 22 O 1.20754 * 127.33322 * 179.67574 * 21 20 18 23 23 C 1.53523 * 105.34058 * 359.69871 * 21 20 18 24 24 H 1.09000 * 115.84396 * 161.08369 * 23 21 20 25 25 C 1.56926 * 100.84547 * 34.04221 * 23 21 20 26 26 C 1.46934 * 118.73534 * 306.39180 * 12 11 10 27 27 C 1.53035 * 109.45995 * 174.44330 * 9 7 2 28 28 H 0.96999 * 120.00541 * 174.64198 * 1 2 3 29 29 H 1.08999 * 109.45774 * 54.47063 * 9 7 2 30 30 H 1.09002 * 109.49470 * 298.56823 * 10 9 7 31 31 H 1.09002 * 109.49636 * 58.65763 * 10 9 7 32 32 H 1.08994 * 109.58552 * 294.84334 * 11 10 9 33 33 H 1.09001 * 109.58279 * 174.41971 * 11 10 9 34 34 H 1.09002 * 110.43212 * 359.64487 * 17 15 13 35 35 H 1.08996 * 110.43582 * 122.14436 * 17 15 13 36 36 H 1.09000 * 110.35669 * 311.53001 * 20 18 17 37 37 H 1.09006 * 110.44760 * 189.27632 * 20 18 17 38 38 H 1.09000 * 112.08633 * 63.25386 * 25 23 21 39 39 H 1.08993 * 112.08611 * 189.94324 * 25 23 21 40 40 H 1.09007 * 109.58454 * 293.82185 * 26 12 11 41 41 H 1.09002 * 109.58445 * 173.40044 * 26 12 11 42 42 H 1.09004 * 109.50331 * 301.33830 * 27 9 7 43 43 H 1.09005 * 109.49829 * 61.44044 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1028 1.6963 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 1.5026 -2.1074 0.2830 9 6 3.4581 -1.2248 -0.3967 10 6 3.5926 -0.8421 -1.8724 11 6 5.0740 -0.8407 -2.2625 12 7 5.6537 -2.1473 -1.9227 13 6 6.3125 -2.8687 -2.8511 14 8 6.7870 -3.9457 -2.5580 15 6 6.4595 -2.3371 -4.2536 16 1 6.9574 -1.3676 -4.2415 17 6 5.0768 -2.2277 -4.9366 18 6 5.1760 -3.1755 -6.1712 19 1 4.2355 -3.4991 -6.6172 20 6 6.1783 -2.4591 -7.1276 21 6 7.5304 -2.5837 -6.4408 22 8 8.5939 -2.1711 -6.8370 23 6 7.2550 -3.3461 -5.1370 24 1 8.1215 -3.8100 -4.6657 25 6 6.1007 -4.3058 -5.5944 26 6 5.5021 -2.6522 -0.5512 27 6 4.0159 -2.6333 -0.1802 28 1 -0.4851 -0.8363 -0.0784 29 1 4.0160 -0.5154 0.2144 30 1 3.0554 -1.5653 -2.4861 31 1 3.1738 0.1518 -2.0301 32 1 5.5953 -0.0559 -1.7145 33 1 5.1694 -0.6662 -3.3342 34 1 4.2907 -2.5642 -4.2605 35 1 4.8909 -1.2027 -5.2574 36 1 5.9073 -1.4097 -7.2439 37 1 6.1989 -2.9546 -8.0983 38 1 6.4282 -5.0016 -6.3669 39 1 5.6399 -4.8227 -4.7527 40 1 6.0584 -2.0151 0.1364 41 1 5.8802 -3.6730 -0.4938 42 1 3.8985 -2.9143 0.8664 43 1 3.4748 -3.3397 -0.8100 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001638375861.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:59 Heat of formation + Delta-G solvation = -93.672226 kcal Electronic energy + Delta-G solvation = -24450.276001 eV Core-core repulsion = 21073.058108 eV Total energy + Delta-G solvation = -3377.217893 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.40139 -40.64630 -38.79407 -38.15245 -35.41548 -33.54365 -32.38084 -31.10787 -29.82919 -28.24600 -27.77647 -24.87041 -24.04335 -23.15176 -21.58920 -21.06843 -19.94258 -19.66213 -19.29665 -18.35314 -17.60711 -16.85185 -16.54773 -16.15857 -15.88195 -15.74251 -15.27260 -15.16255 -14.86255 -14.65336 -14.41627 -14.30268 -13.98883 -13.79066 -13.61290 -13.24148 -12.70411 -12.49250 -12.47601 -12.32779 -12.22239 -12.10433 -12.06725 -11.80622 -11.69592 -11.58647 -11.48587 -11.15493 -10.87337 -10.70771 -10.43290 -10.36425 -9.62454 -8.66980 -6.32033 0.83034 1.48969 1.56579 1.58871 1.77893 2.02049 2.55936 2.96806 3.09770 3.26365 3.33336 3.61208 3.67673 3.93324 4.00432 4.06334 4.11719 4.14529 4.26409 4.29102 4.34339 4.40088 4.46936 4.60647 4.74419 4.77858 4.79130 4.81663 4.83269 4.95666 4.97237 5.02517 5.06392 5.12866 5.16773 5.19946 5.25208 5.42355 5.58911 5.78223 6.05629 6.15223 6.42592 6.44546 6.60453 7.12306 7.45947 8.67776 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023055 B = 0.004528 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.199305 B = 6182.628008 C = 6566.372542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.019 4.019 3 Si 1.079 2.921 4 H -0.297 1.297 5 H -0.270 1.270 6 H -0.223 1.223 7 C -0.603 4.603 8 H 0.008 0.992 9 C 0.017 3.983 10 C -0.130 4.130 11 C 0.101 3.899 12 N -0.603 5.603 13 C 0.521 3.479 14 O -0.581 6.581 15 C -0.101 4.101 16 H 0.114 0.886 17 C -0.122 4.122 18 C -0.080 4.080 19 H 0.140 0.860 20 C -0.167 4.167 21 C 0.375 3.625 22 O -0.481 6.481 23 C -0.140 4.140 24 H 0.101 0.899 25 C -0.118 4.118 26 C 0.116 3.884 27 C -0.105 4.105 28 H 0.250 0.750 29 H 0.030 0.970 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.111 0.889 34 H 0.065 0.935 35 H 0.108 0.892 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.092 0.908 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.057 0.943 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.862 -1.930 -14.492 19.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.216 4.216 3 Si 0.899 3.101 4 H -0.224 1.224 5 H -0.195 1.195 6 H -0.147 1.147 7 C -0.640 4.640 8 H 0.027 0.973 9 C -0.002 4.002 10 C -0.168 4.168 11 C -0.021 4.021 12 N -0.335 5.335 13 C 0.310 3.690 14 O -0.462 6.462 15 C -0.122 4.122 16 H 0.132 0.868 17 C -0.160 4.160 18 C -0.098 4.098 19 H 0.158 0.842 20 C -0.204 4.204 21 C 0.252 3.748 22 O -0.356 6.356 23 C -0.160 4.160 24 H 0.119 0.881 25 C -0.155 4.155 26 C -0.006 4.006 27 C -0.144 4.144 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.129 0.871 34 H 0.084 0.916 35 H 0.126 0.874 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.110 0.890 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.076 0.924 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 13.467 -0.637 -14.462 19.772 hybrid contribution -0.579 -2.241 0.910 2.487 sum 12.888 -2.879 -13.553 18.923 Atomic orbital electron populations 1.70968 1.08713 1.29442 1.48762 1.27267 0.95895 1.06378 0.92059 0.83709 0.75066 0.71330 0.79952 1.22391 1.19540 1.14692 1.22237 0.97312 0.94599 1.49872 0.97322 1.18964 0.94089 0.93707 0.93440 1.22266 0.94715 1.01740 0.98071 1.22138 0.93598 0.83507 1.02808 1.48191 1.53951 1.20660 1.10703 1.20828 0.76888 0.84018 0.87221 1.90640 1.50522 1.23191 1.81829 1.22270 0.99350 1.00290 0.90313 0.86766 1.22938 0.93288 1.02515 0.97232 1.23637 0.98574 0.93692 0.93888 0.84247 1.23191 0.91716 1.04816 1.00680 1.25911 0.89821 0.72466 0.86613 1.90402 1.32283 1.42849 1.70030 1.24048 0.99784 0.97119 0.95065 0.88098 1.23576 0.94269 0.96833 1.00838 1.21604 0.96234 1.00332 0.82447 1.21696 0.94296 0.98287 1.00101 0.94126 0.95173 0.93481 0.91145 0.90033 0.87087 0.91608 0.87365 0.86089 0.86085 0.88976 0.91527 0.90295 0.90388 0.92397 0.94630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.56 13.69 21.45 0.29 -57.27 16 2 C -0.02 -1.03 5.32 84.66 0.45 -0.58 16 3 Si 1.08 45.75 26.35 68.60 1.81 47.55 16 4 H -0.30 -13.13 7.11 99.48 0.71 -12.42 16 5 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 6 H -0.22 -7.65 5.63 99.48 0.56 -7.09 16 7 C -0.60 -32.69 8.82 25.60 0.23 -32.47 16 8 H 0.01 0.52 7.99 -2.91 -0.02 0.50 16 9 C 0.02 0.72 1.65 -11.52 -0.02 0.70 16 10 C -0.13 -4.56 5.05 30.67 0.15 -4.41 16 11 C 0.10 2.64 5.80 86.36 0.50 3.14 16 12 N -0.60 -17.64 2.97 -818.90 -2.43 -20.08 16 13 C 0.52 15.01 6.61 87.66 0.58 15.59 16 14 O -0.58 -20.60 14.96 -3.05 -0.05 -20.65 16 15 C -0.10 -2.10 1.76 -9.98 -0.02 -2.11 16 16 H 0.11 2.03 7.75 -2.39 -0.02 2.01 16 17 C -0.12 -2.01 4.13 32.17 0.13 -1.87 16 18 C -0.08 -1.00 5.25 -7.33 -0.04 -1.04 16 19 H 0.14 1.22 8.14 -2.39 -0.02 1.20 16 20 C -0.17 -1.87 6.10 31.35 0.19 -1.68 16 21 C 0.37 7.22 7.14 30.49 0.22 7.44 16 22 O -0.48 -12.81 17.99 -1.43 -0.03 -12.84 16 23 C -0.14 -2.95 3.99 -8.23 -0.03 -2.98 16 24 H 0.10 2.53 7.85 -2.39 -0.02 2.51 16 25 C -0.12 -2.07 6.31 33.38 0.21 -1.86 16 26 C 0.12 3.71 6.43 86.36 0.56 4.27 16 27 C -0.11 -4.04 5.30 30.67 0.16 -3.88 16 28 H 0.25 15.62 8.73 -92.71 -0.81 14.81 16 29 H 0.03 1.24 6.80 -2.39 -0.02 1.22 16 30 H 0.05 1.75 8.07 -2.39 -0.02 1.73 16 31 H 0.07 2.52 4.80 -2.39 -0.01 2.51 16 32 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.11 2.16 4.51 -2.39 -0.01 2.14 16 34 H 0.07 1.39 7.38 -2.39 -0.02 1.38 16 35 H 0.11 1.26 7.37 -2.39 -0.02 1.24 16 36 H 0.12 1.00 7.84 -2.39 -0.02 0.99 16 37 H 0.12 0.96 8.14 -2.38 -0.02 0.94 16 38 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.07 1.50 7.64 -2.39 -0.02 1.48 16 40 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 41 H 0.08 2.58 7.01 -2.39 -0.02 2.56 16 42 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.03 1.46 8.14 -2.38 -0.02 1.44 16 Total: -1.00 -71.97 326.21 3.69 -68.28 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.82 Total: 16.74 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: 3.27 Total: -21.74 kcal Atomic # 7 Polarization: -75.21 SS G_CDS: -2.14 Total: -77.35 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -0.07 Total: -33.48 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.81 Total: 47.55 kcal Total: -71.97 3.69 -68.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638375861.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.390 kcal (2) G-P(sol) polarization free energy of solvation -71.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds