Wall clock time and date at job start Tue Mar 31 2020 06:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38281 * 119.94546 * 2 1 4 4 C 1.38130 * 120.05783 * 179.97438 * 3 2 1 5 5 C 1.38757 * 119.94053 * 0.02562 * 4 3 2 6 6 O 1.35896 * 120.05265 * 180.02562 * 5 4 3 7 7 C 1.42905 * 117.00039 * 359.97438 * 6 5 4 8 8 C 1.52999 * 109.46728 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.46953 * 180.02562 * 8 7 6 10 10 O 1.21279 * 119.99692 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00146 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99854 * 359.97438 * 11 9 8 13 13 C 1.46496 * 119.99875 * 180.02562 * 11 9 8 14 14 C 1.50703 * 109.47266 * 89.99574 * 13 11 9 15 15 H 1.07990 * 119.99879 * 0.02562 * 14 13 11 16 16 C 1.37879 * 119.99602 * 179.97438 * 14 13 11 17 17 N 1.31520 * 119.99623 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 120.00294 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47144 * 90.00354 * 18 16 14 20 20 H 1.48507 * 109.46940 * 210.00123 * 18 16 14 21 21 H 1.48504 * 109.47197 * 330.00114 * 18 16 14 22 22 C 1.38709 * 119.88984 * 0.27738 * 5 4 3 23 23 C 1.50701 * 120.02948 * 179.72382 * 22 5 4 24 24 C 1.38166 * 119.94128 * 359.44794 * 22 5 4 25 25 H 1.08995 * 109.46770 * 90.00180 * 1 2 3 26 26 H 1.08999 * 109.47261 * 209.99882 * 1 2 3 27 27 H 1.09001 * 109.47108 * 330.00183 * 1 2 3 28 28 H 1.07996 * 119.97422 * 359.97438 * 3 2 1 29 29 H 1.07997 * 120.02883 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.47187 * 300.00222 * 7 6 5 31 31 H 1.09001 * 109.46558 * 60.00270 * 7 6 5 32 32 H 1.09000 * 109.47486 * 300.00062 * 8 7 6 33 33 H 1.09001 * 109.47362 * 60.00784 * 8 7 6 34 34 H 1.08994 * 109.46378 * 90.00584 * 12 11 9 35 35 H 1.08999 * 109.46664 * 209.99875 * 12 11 9 36 36 H 1.08999 * 109.46848 * 330.00481 * 12 11 9 37 37 H 1.09000 * 109.47177 * 209.99924 * 13 11 9 38 38 H 1.09000 * 109.47021 * 329.99726 * 13 11 9 39 39 H 0.96998 * 120.00010 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.46852 * 89.99583 * 23 22 5 41 41 H 1.08994 * 109.46996 * 210.00468 * 23 22 5 42 42 H 1.08996 * 109.46797 * 330.00359 * 23 22 5 43 43 H 1.07999 * 119.97225 * 180.27358 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5786 1.2009 0.0005 5 6 4.2735 -0.0001 0.0005 6 8 5.6324 -0.0001 0.0016 7 6 6.2812 1.2732 0.0021 8 6 7.7980 1.0726 0.0039 9 6 8.4823 2.4154 0.0051 10 8 7.8217 3.4325 0.0050 11 7 9.8282 2.4859 0.0062 12 6 10.6260 1.2572 0.0069 13 6 10.4932 3.7912 0.0079 14 6 10.7201 4.2376 1.4293 15 1 10.4011 3.6114 2.2493 16 6 11.3357 5.4450 1.6827 17 7 11.5342 5.8343 2.9232 18 14 11.8880 6.5277 0.2643 19 1 10.7872 7.4507 -0.1117 20 1 13.0763 7.3169 0.6775 21 1 12.2398 5.6763 -0.9005 22 6 3.5788 -1.2007 -0.0058 23 6 4.3303 -2.5069 -0.0121 24 6 2.1971 -1.1979 -0.0006 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6560 2.1327 -0.0004 29 1 4.1172 2.1370 0.0001 30 1 5.9890 1.8302 -0.8881 31 1 5.9876 1.8301 0.8919 32 1 8.0899 0.5158 0.8943 33 1 8.0920 0.5155 -0.8857 34 1 10.8248 0.9526 -1.0206 35 1 11.5699 1.4372 0.5215 36 1 10.0770 0.4678 0.5202 37 1 11.4516 3.7113 -0.5052 38 1 9.8656 4.5194 -0.5058 39 1 11.9670 6.6839 3.1015 40 1 4.5111 -2.8269 1.0140 41 1 3.7403 -3.2630 -0.5301 42 1 5.2831 -2.3753 -0.5249 43 1 1.6557 -2.1324 -0.0011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034652999.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:30 Heat of formation + Delta-G solvation = -59.545894 kcal Electronic energy + Delta-G solvation = -22480.191791 eV Core-core repulsion = 19104.453727 eV Total energy + Delta-G solvation = -3375.738064 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.38588 -39.19952 -37.73960 -35.03934 -33.50518 -32.65589 -31.90703 -31.29062 -28.51050 -27.37688 -26.36386 -25.94716 -24.51878 -22.39551 -21.26006 -20.79465 -18.62600 -17.99743 -17.02023 -16.47048 -16.27649 -16.00429 -15.34758 -14.99710 -14.88010 -14.40502 -14.12308 -13.87262 -13.57856 -13.32379 -13.30066 -12.92328 -12.80988 -12.67506 -12.37908 -12.15250 -12.08270 -12.06394 -11.75108 -11.47942 -11.44861 -11.39694 -10.95962 -10.77098 -10.60109 -10.54786 -10.17991 -9.58622 -9.15843 -8.92182 -8.61946 -8.04378 -7.78395 -6.11655 -4.10936 1.21940 1.31882 2.99015 3.23182 3.27189 3.33180 3.34832 3.60509 3.94625 4.36847 4.62320 4.67394 4.78784 4.87446 5.03139 5.07735 5.13298 5.14673 5.22951 5.27111 5.40132 5.43285 5.47471 5.56711 5.60500 5.62122 5.70963 5.76087 5.77850 5.86471 5.87451 6.09712 6.13591 6.25922 6.33881 6.48724 6.64088 6.72710 6.88899 7.25186 7.37858 7.56935 8.14519 8.42766 8.83393 8.92235 9.48117 11.01704 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026646 B = 0.002844 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.545661 B = 9841.442232 C =10474.504342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.128 4.128 3 C -0.085 4.085 4 C -0.199 4.199 5 C 0.130 3.870 6 O -0.316 6.316 7 C 0.076 3.924 8 C -0.137 4.137 9 C 0.512 3.488 10 O -0.543 6.543 11 N -0.595 5.595 12 C 0.081 3.919 13 C 0.215 3.785 14 C -0.530 4.530 15 H 0.074 0.926 16 C 0.072 3.928 17 N -0.897 5.897 18 Si 0.877 3.123 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.266 1.266 22 C -0.118 4.118 23 C -0.104 4.104 24 C -0.086 4.086 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.123 0.877 29 H 0.133 0.867 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.047 0.953 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.031 0.969 38 H 0.037 0.963 39 H 0.265 0.735 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.869 -16.414 -7.976 24.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.128 4.128 3 C -0.103 4.103 4 C -0.218 4.218 5 C 0.085 3.915 6 O -0.229 6.229 7 C 0.000 4.000 8 C -0.177 4.177 9 C 0.298 3.702 10 O -0.421 6.421 11 N -0.327 5.327 12 C -0.063 4.063 13 C 0.094 3.906 14 C -0.569 4.569 15 H 0.092 0.908 16 C -0.131 4.131 17 N -0.535 5.535 18 Si 0.704 3.296 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.191 1.191 22 C -0.119 4.119 23 C -0.160 4.160 24 C -0.104 4.104 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.141 0.859 29 H 0.151 0.849 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.049 0.951 38 H 0.055 0.945 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.956 -15.872 -7.867 23.841 hybrid contribution 0.454 0.943 -0.483 1.152 sum -15.503 -14.929 -8.350 23.086 Atomic orbital electron populations 1.20697 0.91240 1.02494 1.01977 1.19784 0.96060 0.93031 1.03925 1.20824 0.93326 0.97649 0.98527 1.21389 0.95426 0.97540 1.07423 1.18797 0.82415 0.93558 0.96743 1.85948 1.16130 1.32471 1.88381 1.22488 0.91531 0.82885 1.03066 1.21504 0.93478 0.97498 1.05243 1.19991 0.82740 0.90003 0.77452 1.90684 1.64126 1.37008 1.50314 1.47810 1.04994 1.08468 1.71400 1.21713 0.97316 0.86606 1.00649 1.19695 0.92220 0.80183 0.98467 1.21317 1.39183 1.05183 0.91199 0.90761 1.24868 0.95292 0.97272 0.95619 1.69899 1.43050 1.21948 1.18627 0.86835 0.78668 0.81235 0.82856 1.19882 1.21020 1.19058 1.19245 0.93251 0.93523 1.05857 1.20592 1.00114 0.93074 1.02252 1.20704 0.92353 0.97653 0.99730 0.91585 0.91831 0.91770 0.85912 0.84905 0.91165 0.90904 0.88125 0.88438 0.93448 0.90413 0.91909 0.95077 0.94479 0.92512 0.91452 0.91928 0.91056 0.85684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.01 36.01 0.36 -0.43 16 2 C -0.13 -1.30 5.88 -104.60 -0.62 -1.92 16 3 C -0.09 -0.95 9.69 -39.61 -0.38 -1.34 16 4 C -0.20 -2.55 9.04 -39.43 -0.36 -2.91 16 5 C 0.13 1.73 6.66 -39.22 -0.26 1.47 16 6 O -0.32 -4.34 9.18 -19.41 -0.18 -4.52 16 7 C 0.08 1.09 4.03 37.16 0.15 1.24 16 8 C -0.14 -1.96 4.62 -27.88 -0.13 -2.09 16 9 C 0.51 10.11 7.67 -10.98 -0.08 10.03 16 10 O -0.54 -12.96 15.56 5.56 0.09 -12.87 16 11 N -0.60 -12.03 2.86 -182.95 -0.52 -12.55 16 12 C 0.08 1.20 10.24 59.85 0.61 1.81 16 13 C 0.21 5.21 4.23 -5.19 -0.02 5.19 16 14 C -0.53 -15.19 9.94 -34.44 -0.34 -15.53 16 15 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 16 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 17 N -0.90 -27.64 13.96 55.43 0.77 -26.86 16 18 Si 0.88 21.47 27.47 -169.99 -4.67 16.81 16 19 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 22 C -0.12 -1.37 5.89 -104.47 -0.62 -1.99 16 23 C -0.10 -0.98 9.79 36.01 0.35 -0.63 16 24 C -0.09 -0.88 9.35 -39.60 -0.37 -1.25 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 27 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 28 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 29 H 0.13 1.71 6.30 -52.49 -0.33 1.37 16 30 H 0.07 1.02 7.62 -51.93 -0.40 0.62 16 31 H 0.07 1.12 7.62 -51.93 -0.40 0.73 16 32 H 0.10 1.31 7.40 -51.93 -0.38 0.93 16 33 H 0.10 1.16 8.11 -51.93 -0.42 0.74 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 36 H 0.06 0.76 6.44 -51.93 -0.33 0.43 16 37 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 38 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16 39 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 42 H 0.07 0.71 7.53 -51.93 -0.39 0.32 16 43 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 356.53 15.07 5.37 5.37 Total: -1.00 -34.05 356.53 -7.70 -41.75 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -6.76 Total: -0.79 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -1.80 Total: -6.33 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.25 Total: -39.41 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.09 Total: -17.39 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.05 -7.70 -41.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034652999.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.800 kcal (2) G-P(sol) polarization free energy of solvation -34.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds