Wall clock time and date at job start Tue Mar 31 2020 06:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38281 * 119.94546 * 2 1 4 4 C 1.38130 * 120.05783 * 179.97438 * 3 2 1 5 5 C 1.38757 * 119.94053 * 0.02562 * 4 3 2 6 6 O 1.35896 * 120.05265 * 180.02562 * 5 4 3 7 7 C 1.42905 * 117.00039 * 359.97438 * 6 5 4 8 8 C 1.52999 * 109.46728 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.46953 * 180.02562 * 8 7 6 10 10 O 1.21279 * 119.99692 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00146 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99854 * 359.97438 * 11 9 8 13 13 C 1.46496 * 119.99875 * 180.02562 * 11 9 8 14 14 C 1.50703 * 109.47266 * 89.99574 * 13 11 9 15 15 H 1.07990 * 119.99879 * 0.02562 * 14 13 11 16 16 C 1.37879 * 119.99602 * 179.97438 * 14 13 11 17 17 N 1.31520 * 119.99623 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 120.00294 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47144 * 90.00354 * 18 16 14 20 20 H 1.48507 * 109.46940 * 210.00123 * 18 16 14 21 21 H 1.48504 * 109.47197 * 330.00114 * 18 16 14 22 22 C 1.38709 * 119.88984 * 0.27738 * 5 4 3 23 23 C 1.50701 * 120.02948 * 179.72382 * 22 5 4 24 24 C 1.38166 * 119.94128 * 359.44794 * 22 5 4 25 25 H 1.08995 * 109.46770 * 90.00180 * 1 2 3 26 26 H 1.08999 * 109.47261 * 209.99882 * 1 2 3 27 27 H 1.09001 * 109.47108 * 330.00183 * 1 2 3 28 28 H 1.07996 * 119.97422 * 359.97438 * 3 2 1 29 29 H 1.07997 * 120.02883 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.47187 * 300.00222 * 7 6 5 31 31 H 1.09001 * 109.46558 * 60.00270 * 7 6 5 32 32 H 1.09000 * 109.47486 * 300.00062 * 8 7 6 33 33 H 1.09001 * 109.47362 * 60.00784 * 8 7 6 34 34 H 1.08994 * 109.46378 * 90.00584 * 12 11 9 35 35 H 1.08999 * 109.46664 * 209.99875 * 12 11 9 36 36 H 1.08999 * 109.46848 * 330.00481 * 12 11 9 37 37 H 1.09000 * 109.47177 * 209.99924 * 13 11 9 38 38 H 1.09000 * 109.47021 * 329.99726 * 13 11 9 39 39 H 0.96998 * 120.00010 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.46852 * 89.99583 * 23 22 5 41 41 H 1.08994 * 109.46996 * 210.00468 * 23 22 5 42 42 H 1.08996 * 109.46797 * 330.00359 * 23 22 5 43 43 H 1.07999 * 119.97225 * 180.27358 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5786 1.2009 0.0005 5 6 4.2735 -0.0001 0.0005 6 8 5.6324 -0.0001 0.0016 7 6 6.2812 1.2732 0.0021 8 6 7.7980 1.0726 0.0039 9 6 8.4823 2.4154 0.0051 10 8 7.8217 3.4325 0.0050 11 7 9.8282 2.4859 0.0062 12 6 10.6260 1.2572 0.0069 13 6 10.4932 3.7912 0.0079 14 6 10.7201 4.2376 1.4293 15 1 10.4011 3.6114 2.2493 16 6 11.3357 5.4450 1.6827 17 7 11.5342 5.8343 2.9232 18 14 11.8880 6.5277 0.2643 19 1 10.7872 7.4507 -0.1117 20 1 13.0763 7.3169 0.6775 21 1 12.2398 5.6763 -0.9005 22 6 3.5788 -1.2007 -0.0058 23 6 4.3303 -2.5069 -0.0121 24 6 2.1971 -1.1979 -0.0006 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6560 2.1327 -0.0004 29 1 4.1172 2.1370 0.0001 30 1 5.9890 1.8302 -0.8881 31 1 5.9876 1.8301 0.8919 32 1 8.0899 0.5158 0.8943 33 1 8.0920 0.5155 -0.8857 34 1 10.8248 0.9526 -1.0206 35 1 11.5699 1.4372 0.5215 36 1 10.0770 0.4678 0.5202 37 1 11.4516 3.7113 -0.5052 38 1 9.8656 4.5194 -0.5058 39 1 11.9670 6.6839 3.1015 40 1 4.5111 -2.8269 1.0140 41 1 3.7403 -3.2630 -0.5301 42 1 5.2831 -2.3753 -0.5249 43 1 1.6557 -2.1324 -0.0011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034652999.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:29 Heat of formation + Delta-G solvation = -80.559873 kcal Electronic energy + Delta-G solvation = -22481.103026 eV Core-core repulsion = 19104.453727 eV Total energy + Delta-G solvation = -3376.649299 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.37558 -40.68382 -38.71193 -36.71743 -34.77576 -34.32306 -33.01891 -32.31706 -30.34730 -28.09487 -27.50078 -27.06173 -25.87754 -23.99236 -22.41760 -21.63041 -20.04351 -19.17618 -19.13273 -17.76275 -17.47514 -17.17936 -16.93813 -16.36859 -15.87001 -15.82518 -15.27566 -14.86790 -14.73807 -14.51699 -14.25604 -14.10825 -14.04991 -13.88382 -13.66711 -13.39992 -13.34539 -13.24842 -12.87929 -12.76797 -12.61777 -12.39924 -12.38167 -12.20528 -12.03509 -11.76705 -11.68284 -11.63161 -10.85512 -10.80044 -9.77346 -9.44945 -8.94117 -8.35991 -6.41583 0.35342 0.43751 1.31894 1.36043 1.44498 1.67856 1.83977 2.29599 2.57307 2.74086 2.98519 3.58041 3.80931 3.84314 3.88120 3.95717 4.04971 4.24380 4.32500 4.37721 4.44192 4.56989 4.64854 4.68494 4.70739 4.77298 4.79789 4.81992 4.86200 4.89941 4.93722 4.99190 5.02469 5.15280 5.36284 5.40174 5.43245 5.50812 5.56420 5.67502 5.88896 6.20414 6.38003 6.59555 6.61940 7.17600 7.32633 8.81055 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026646 B = 0.002844 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.545661 B = 9841.442232 C =10474.504342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.127 4.127 3 C -0.099 4.099 4 C -0.217 4.217 5 C 0.100 3.900 6 O -0.315 6.315 7 C 0.084 3.916 8 C -0.120 4.120 9 C 0.502 3.498 10 O -0.596 6.596 11 N -0.604 5.604 12 C 0.074 3.926 13 C 0.222 3.778 14 C -0.538 4.538 15 H 0.028 0.972 16 C 0.009 3.991 17 N -0.946 5.946 18 Si 0.950 3.050 19 H -0.277 1.277 20 H -0.275 1.275 21 H -0.236 1.236 22 C -0.125 4.125 23 C -0.102 4.102 24 C -0.088 4.088 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.136 0.864 29 H 0.120 0.880 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.119 0.881 33 H 0.133 0.867 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.054 0.946 38 H 0.020 0.980 39 H 0.269 0.731 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.063 0.937 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.535 -18.620 -9.975 26.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.127 4.127 3 C -0.117 4.117 4 C -0.236 4.236 5 C 0.055 3.945 6 O -0.229 6.229 7 C 0.008 3.992 8 C -0.159 4.159 9 C 0.291 3.709 10 O -0.478 6.478 11 N -0.335 5.335 12 C -0.068 4.068 13 C 0.099 3.901 14 C -0.576 4.576 15 H 0.046 0.954 16 C -0.189 4.189 17 N -0.586 5.586 18 Si 0.772 3.228 19 H -0.202 1.202 20 H -0.200 1.200 21 H -0.159 1.159 22 C -0.126 4.126 23 C -0.158 4.158 24 C -0.106 4.106 25 H 0.095 0.905 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.153 0.847 29 H 0.138 0.862 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.137 0.863 33 H 0.151 0.849 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.110 0.890 37 H 0.072 0.928 38 H 0.038 0.962 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.103 0.897 42 H 0.082 0.918 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -16.612 -18.145 -9.875 26.509 hybrid contribution 0.542 1.552 0.225 1.660 sum -16.069 -16.593 -9.650 25.034 Atomic orbital electron populations 1.20759 0.88946 1.03570 1.02994 1.20198 0.97779 0.92572 1.02150 1.21075 0.92808 0.99030 0.98750 1.21446 0.96395 0.97166 1.08584 1.19108 0.82187 0.94511 0.98726 1.85906 1.16703 1.31422 1.88883 1.22255 0.91892 0.83246 1.01789 1.21394 0.92530 0.94300 1.07709 1.20920 0.82541 0.91472 0.75982 1.90653 1.65228 1.39342 1.52542 1.47931 1.05728 1.08751 1.71099 1.22045 0.96519 0.84965 1.03286 1.19378 0.93112 0.82227 0.95345 1.21563 1.38752 1.04918 0.92409 0.95375 1.25888 0.95367 0.98927 0.98687 1.70054 1.44423 1.22822 1.21312 0.85690 0.78143 0.79137 0.79825 1.20230 1.19993 1.15895 1.19623 0.94101 0.93708 1.05154 1.20631 0.99909 0.92527 1.02778 1.21096 0.91944 0.98907 0.98626 0.90465 0.90276 0.91253 0.84659 0.86234 0.91899 0.93059 0.86300 0.84874 0.89824 0.91451 0.89016 0.92836 0.96193 0.92230 0.90966 0.89670 0.91779 0.82754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 10.01 71.24 0.71 -0.56 16 2 C -0.13 -2.36 5.88 -19.85 -0.12 -2.48 16 3 C -0.10 -2.19 9.69 22.25 0.22 -1.97 16 4 C -0.22 -5.78 9.04 22.37 0.20 -5.58 16 5 C 0.10 2.66 6.66 22.51 0.15 2.81 16 6 O -0.32 -8.60 9.18 -92.39 -0.85 -9.45 16 7 C 0.08 2.46 4.03 71.98 0.29 2.75 16 8 C -0.12 -3.26 4.62 29.85 0.14 -3.13 16 9 C 0.50 19.88 7.67 87.66 0.67 20.56 16 10 O -0.60 -29.53 15.56 -3.03 -0.05 -29.58 16 11 N -0.60 -24.00 2.86 -851.13 -2.43 -26.44 16 12 C 0.07 1.99 10.24 127.77 1.31 3.30 16 13 C 0.22 10.72 4.23 85.63 0.36 11.09 16 14 C -0.54 -31.74 9.94 25.60 0.25 -31.48 16 15 H 0.03 1.86 8.06 -2.92 -0.02 1.83 16 16 C 0.01 0.55 5.47 84.65 0.46 1.01 16 17 N -0.95 -60.17 13.96 21.45 0.30 -59.87 16 18 Si 0.95 44.41 27.47 68.60 1.88 46.30 16 19 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 20 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 21 H -0.24 -9.81 6.54 99.48 0.65 -9.16 16 22 C -0.13 -2.73 5.89 -19.77 -0.12 -2.85 16 23 C -0.10 -1.71 9.79 71.24 0.70 -1.01 16 24 C -0.09 -1.59 9.35 22.25 0.21 -1.38 16 25 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.08 0.72 8.08 -2.39 -0.02 0.70 16 27 H 0.07 0.77 8.08 -2.39 -0.02 0.75 16 28 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 29 H 0.12 3.37 6.30 -2.91 -0.02 3.35 16 30 H 0.06 1.91 7.62 -2.39 -0.02 1.89 16 31 H 0.05 1.69 7.62 -2.39 -0.02 1.68 16 32 H 0.12 2.85 7.40 -2.39 -0.02 2.83 16 33 H 0.13 2.72 8.11 -2.39 -0.02 2.70 16 34 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.07 1.98 8.07 -2.39 -0.02 1.96 16 36 H 0.09 1.94 6.44 -2.39 -0.02 1.93 16 37 H 0.05 2.35 7.13 -2.39 -0.02 2.33 16 38 H 0.02 1.04 6.85 -2.39 -0.02 1.02 16 39 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 40 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.08 1.02 8.09 -2.39 -0.02 1.00 16 42 H 0.06 1.17 7.53 -2.39 -0.02 1.15 16 43 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -78.24 356.53 5.23 -73.02 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: 0.93 Total: 14.95 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: 5.44 Total: -8.94 kcal Atomic # 7 Polarization: -84.17 SS G_CDS: -2.13 Total: -86.30 kcal Atomic # 8 Polarization: -38.13 SS G_CDS: -0.90 Total: -39.03 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.88 Total: 46.30 kcal Total: -78.24 5.23 -73.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034652999.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.544 kcal (2) G-P(sol) polarization free energy of solvation -78.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds