Wall clock time and date at job start Tue Mar 31 2020 07:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38554 * 119.80052 * 2 1 4 4 C 1.37787 * 120.29726 * 179.97438 * 3 2 1 5 5 C 1.39709 * 119.90986 * 0.02562 * 4 3 2 6 6 C 1.47534 * 120.19135 * 179.97438 * 5 4 3 7 7 O 1.21594 * 120.00415 * 145.91350 * 6 5 4 8 8 N 1.34778 * 120.00399 * 325.91760 * 6 5 4 9 9 C 1.46504 * 119.99778 * 6.41363 * 8 6 5 10 10 C 1.50693 * 109.47262 * 105.41959 * 9 8 6 11 11 H 1.07999 * 120.00088 * 0.02562 * 10 9 8 12 12 C 1.37881 * 119.99842 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00189 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99852 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.46947 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47117 * 119.99591 * 14 12 10 17 17 H 1.48494 * 109.47044 * 239.99820 * 14 12 10 18 18 C 1.46494 * 120.00480 * 186.41570 * 8 6 5 19 19 C 1.52997 * 109.47429 * 83.09482 * 18 8 6 20 20 C 1.52999 * 109.46916 * 65.00059 * 19 18 8 21 21 C 1.52999 * 109.47366 * 185.00400 * 19 18 8 22 22 C 1.40129 * 119.61914 * 359.97438 * 5 4 3 23 23 O 1.35656 * 120.15693 * 179.72557 * 22 5 4 24 24 C 1.38055 * 119.80896 * 179.97438 * 2 1 3 25 25 H 1.09004 * 109.47016 * 90.00126 * 1 2 3 26 26 H 1.09001 * 109.46442 * 209.99516 * 1 2 3 27 27 H 1.08994 * 109.47253 * 329.99442 * 1 2 3 28 28 H 1.07997 * 119.84672 * 359.96187 * 3 2 1 29 29 H 1.08005 * 120.04430 * 179.97438 * 4 3 2 30 30 H 1.08996 * 109.46868 * 225.42779 * 9 8 6 31 31 H 1.09003 * 109.47025 * 345.41911 * 9 8 6 32 32 H 0.96999 * 119.99481 * 180.02562 * 13 12 10 33 33 H 1.09003 * 109.47492 * 203.09896 * 18 8 6 34 34 H 1.09003 * 109.46747 * 323.09342 * 18 8 6 35 35 H 1.08999 * 109.46757 * 305.00371 * 19 18 8 36 36 H 1.09004 * 109.46767 * 180.02562 * 20 19 18 37 37 H 1.09003 * 109.47152 * 299.99991 * 20 19 18 38 38 H 1.08999 * 109.47153 * 60.00554 * 20 19 18 39 39 H 1.09000 * 109.47371 * 59.99921 * 21 19 18 40 40 H 1.08992 * 109.47149 * 180.02562 * 21 19 18 41 41 H 1.09007 * 109.46627 * 300.00030 * 21 19 18 42 42 H 0.96698 * 114.00308 * 89.99348 * 23 22 5 43 43 H 1.07994 * 119.95672 * 0.03779 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2023 0.0000 4 6 3.5734 1.2143 0.0005 5 6 4.2805 0.0093 0.0005 6 6 5.7558 0.0149 0.0005 7 8 6.3671 -0.8549 0.5907 8 7 6.4262 0.9841 -0.6535 9 6 5.6963 2.1083 -1.2449 10 6 5.9015 3.3400 -0.4012 11 1 6.5146 3.2904 0.4865 12 6 5.3065 4.5301 -0.7626 13 7 4.5603 4.5906 -1.8439 14 14 5.5615 6.0571 0.2828 15 1 6.4365 5.7268 1.4364 16 1 6.2014 7.1171 -0.5369 17 1 4.2488 6.5410 0.7805 18 6 7.8845 0.9134 -0.7732 19 6 8.2565 0.0083 -1.9493 20 6 7.7737 0.6439 -3.2545 21 6 9.7758 -0.1658 -1.9982 22 6 3.5804 -1.2045 0.0005 23 8 4.2560 -2.3809 -0.0051 24 6 2.1933 -1.1979 0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3632 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6498 2.1343 -0.0006 29 1 4.1060 2.1538 0.0001 30 1 6.0675 2.2924 -2.2531 31 1 4.6336 1.8697 -1.2871 32 1 4.1421 5.4280 -2.0983 33 1 8.2840 1.9132 -0.9435 34 1 8.3051 0.5060 0.1462 35 1 7.7831 -0.9653 -1.8223 36 1 8.0383 -0.0012 -4.0924 37 1 6.6913 0.7679 -3.2197 38 1 8.2471 1.6175 -3.3815 39 1 10.1198 -0.6186 -1.0683 40 1 10.0408 -0.8102 -2.8363 41 1 10.2491 0.8079 -2.1251 42 1 4.4556 -2.7241 0.8766 43 1 1.6495 -2.1309 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044289199.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:03 Heat of formation + Delta-G solvation = -52.848031 kcal Electronic energy + Delta-G solvation = -24285.655055 eV Core-core repulsion = 20910.207432 eV Total energy + Delta-G solvation = -3375.447623 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.10714 -38.32374 -36.62310 -35.83030 -34.29997 -32.46082 -31.95964 -29.54587 -27.73131 -27.44313 -26.72819 -25.24693 -23.11883 -22.18407 -21.45629 -20.11469 -18.83054 -17.39554 -16.74331 -16.38292 -15.94596 -15.05138 -14.93280 -14.71803 -14.54279 -14.28328 -13.88264 -13.57947 -13.32394 -13.08894 -12.77770 -12.48297 -12.36897 -12.18725 -11.92380 -11.79431 -11.49726 -11.33942 -11.21057 -11.04905 -11.00596 -10.81977 -10.59315 -10.41652 -10.26002 -10.16813 -9.84355 -9.69664 -9.00851 -8.72150 -8.17497 -8.15551 -7.63277 -6.27576 -4.36346 1.34809 1.73388 3.15998 3.25546 3.29664 3.47556 3.90021 4.16904 4.30463 4.59581 5.02835 5.08771 5.23033 5.28208 5.37991 5.41918 5.53981 5.55386 5.66405 5.69565 5.90454 5.95192 6.04598 6.10199 6.10954 6.22413 6.23528 6.33646 6.41807 6.47121 6.51280 6.65667 6.69197 6.81072 6.83100 6.88871 6.95921 7.23302 7.29009 7.54771 7.67452 7.95621 8.04313 8.38012 8.72722 9.03021 9.32015 10.77238 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.009752 B = 0.008024 C = 0.004912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2870.611425 B = 3488.746941 C = 5698.414310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.058 4.058 3 C -0.144 4.144 4 C -0.065 4.065 5 C -0.165 4.165 6 C 0.562 3.438 7 O -0.567 6.567 8 N -0.585 5.585 9 C 0.202 3.798 10 C -0.542 4.542 11 H 0.064 0.936 12 C 0.068 3.932 13 N -0.883 5.883 14 Si 0.895 3.105 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.281 1.281 18 C 0.129 3.871 19 C -0.111 4.111 20 C -0.144 4.144 21 C -0.140 4.140 22 C 0.155 3.845 23 O -0.490 6.490 24 C -0.173 4.173 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.126 0.874 29 H 0.190 0.810 30 H 0.037 0.963 31 H 0.069 0.931 32 H 0.267 0.733 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.043 0.957 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.052 0.948 40 H 0.050 0.950 41 H 0.054 0.946 42 H 0.392 0.608 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.824 -7.164 1.265 7.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.058 4.058 3 C -0.162 4.162 4 C -0.083 4.083 5 C -0.169 4.169 6 C 0.351 3.649 7 O -0.449 6.449 8 N -0.314 5.314 9 C 0.083 3.917 10 C -0.580 4.580 11 H 0.082 0.918 12 C -0.137 4.137 13 N -0.520 5.520 14 Si 0.722 3.278 15 H -0.195 1.195 16 H -0.208 1.208 17 H -0.207 1.207 18 C 0.005 3.995 19 C -0.131 4.131 20 C -0.201 4.201 21 C -0.198 4.198 22 C 0.110 3.890 23 O -0.301 6.301 24 C -0.191 4.191 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.144 0.856 29 H 0.206 0.794 30 H 0.055 0.945 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.249 0.751 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.629 -7.400 0.826 7.896 hybrid contribution 0.099 0.952 0.818 1.260 sum -2.530 -6.447 1.644 7.119 Atomic orbital electron populations 1.20808 0.91300 1.02554 1.02342 1.19919 0.95875 0.92835 0.97167 1.21069 0.94397 0.97336 1.03379 1.22791 0.94582 1.00143 0.90774 1.20408 0.94170 0.93775 1.08524 1.18021 0.86650 0.81364 0.78871 1.90637 1.69746 1.38967 1.45521 1.48018 1.06797 1.23428 1.53152 1.20394 0.94227 0.82565 0.94479 1.21514 1.31791 0.93810 1.10893 0.91752 1.24971 0.94709 0.98871 0.95100 1.69945 1.31297 1.27175 1.23583 0.86478 0.78266 0.82615 0.80443 1.19548 1.20755 1.20686 1.21325 0.80901 0.99940 0.97301 1.21487 0.95691 0.99876 0.96046 1.21869 1.02211 1.00093 0.95955 1.21739 0.95489 1.01362 1.01222 1.18398 0.89362 0.84464 0.96823 1.84656 1.76584 1.35196 1.33616 1.21041 0.92844 0.98098 1.07156 0.91065 0.91782 0.91369 0.85585 0.79352 0.94534 0.91436 0.92360 0.89975 0.91458 0.91325 0.93768 0.91936 0.92640 0.92864 0.93047 0.92719 0.75122 0.85737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 10.00 36.00 0.36 -0.91 16 2 C -0.06 -0.87 5.88 -104.57 -0.62 -1.49 16 3 C -0.14 -2.49 9.67 -39.63 -0.38 -2.88 16 4 C -0.07 -1.32 7.42 -39.20 -0.29 -1.61 16 5 C -0.17 -3.40 5.53 -104.85 -0.58 -3.98 16 6 C 0.56 12.50 7.22 -12.47 -0.09 12.41 16 7 O -0.57 -13.21 15.57 -12.77 -0.20 -13.41 16 8 N -0.59 -12.71 2.21 -176.29 -0.39 -13.10 16 9 C 0.20 4.73 4.13 -5.19 -0.02 4.71 16 10 C -0.54 -13.51 7.58 -34.44 -0.26 -13.77 16 11 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 12 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.88 -22.97 13.29 55.43 0.74 -22.23 16 14 Si 0.89 19.73 29.54 -169.99 -5.02 14.71 16 15 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 18 C 0.13 2.49 4.74 -4.05 -0.02 2.47 16 19 C -0.11 -1.91 3.07 -90.62 -0.28 -2.18 16 20 C -0.14 -2.43 8.44 37.16 0.31 -2.12 16 21 C -0.14 -1.95 9.19 37.16 0.34 -1.61 16 22 C 0.16 2.84 6.68 -38.70 -0.26 2.58 16 23 O -0.49 -8.55 12.11 -36.72 -0.44 -9.00 16 24 C -0.17 -2.70 9.62 -39.47 -0.38 -3.08 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 27 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 28 H 0.13 2.01 8.06 -52.49 -0.42 1.59 16 29 H 0.19 4.28 3.97 -52.48 -0.21 4.07 16 30 H 0.04 0.90 6.23 -51.93 -0.32 0.58 16 31 H 0.07 1.63 3.71 -52.83 -0.20 1.43 16 32 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 33 H 0.08 1.59 7.88 -51.93 -0.41 1.18 16 34 H 0.07 1.32 7.55 -51.93 -0.39 0.93 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 1.19 6.14 -51.93 -0.32 0.87 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.72 8.14 -51.92 -0.42 0.29 16 42 H 0.39 5.38 9.06 45.56 0.41 5.79 16 43 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 LS Contribution 348.60 15.07 5.25 5.25 Total: -1.00 -28.49 348.60 -7.95 -36.44 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -5.62 Total: 11.18 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -2.26 Total: -9.85 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.35 Total: -35.33 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.64 Total: -22.40 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.49 -7.95 -36.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044289199.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.407 kcal (2) G-P(sol) polarization free energy of solvation -28.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds