Wall clock time and date at job start Tue Mar 31 2020 07:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38554 * 119.80052 * 2 1 4 4 C 1.37787 * 120.29726 * 179.97438 * 3 2 1 5 5 C 1.39709 * 119.90986 * 0.02562 * 4 3 2 6 6 C 1.47534 * 120.19135 * 179.97438 * 5 4 3 7 7 O 1.21594 * 120.00415 * 145.91350 * 6 5 4 8 8 N 1.34778 * 120.00399 * 325.91760 * 6 5 4 9 9 C 1.46504 * 119.99778 * 6.41363 * 8 6 5 10 10 C 1.50693 * 109.47262 * 105.41959 * 9 8 6 11 11 H 1.07999 * 120.00088 * 0.02562 * 10 9 8 12 12 C 1.37881 * 119.99842 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00189 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99852 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.46947 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47117 * 119.99591 * 14 12 10 17 17 H 1.48494 * 109.47044 * 239.99820 * 14 12 10 18 18 C 1.46494 * 120.00480 * 186.41570 * 8 6 5 19 19 C 1.52997 * 109.47429 * 83.09482 * 18 8 6 20 20 C 1.52999 * 109.46916 * 65.00059 * 19 18 8 21 21 C 1.52999 * 109.47366 * 185.00400 * 19 18 8 22 22 C 1.40129 * 119.61914 * 359.97438 * 5 4 3 23 23 O 1.35656 * 120.15693 * 179.72557 * 22 5 4 24 24 C 1.38055 * 119.80896 * 179.97438 * 2 1 3 25 25 H 1.09004 * 109.47016 * 90.00126 * 1 2 3 26 26 H 1.09001 * 109.46442 * 209.99516 * 1 2 3 27 27 H 1.08994 * 109.47253 * 329.99442 * 1 2 3 28 28 H 1.07997 * 119.84672 * 359.96187 * 3 2 1 29 29 H 1.08005 * 120.04430 * 179.97438 * 4 3 2 30 30 H 1.08996 * 109.46868 * 225.42779 * 9 8 6 31 31 H 1.09003 * 109.47025 * 345.41911 * 9 8 6 32 32 H 0.96999 * 119.99481 * 180.02562 * 13 12 10 33 33 H 1.09003 * 109.47492 * 203.09896 * 18 8 6 34 34 H 1.09003 * 109.46747 * 323.09342 * 18 8 6 35 35 H 1.08999 * 109.46757 * 305.00371 * 19 18 8 36 36 H 1.09004 * 109.46767 * 180.02562 * 20 19 18 37 37 H 1.09003 * 109.47152 * 299.99991 * 20 19 18 38 38 H 1.08999 * 109.47153 * 60.00554 * 20 19 18 39 39 H 1.09000 * 109.47371 * 59.99921 * 21 19 18 40 40 H 1.08992 * 109.47149 * 180.02562 * 21 19 18 41 41 H 1.09007 * 109.46627 * 300.00030 * 21 19 18 42 42 H 0.96698 * 114.00308 * 89.99348 * 23 22 5 43 43 H 1.07994 * 119.95672 * 0.03779 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2023 0.0000 4 6 3.5734 1.2143 0.0005 5 6 4.2805 0.0093 0.0005 6 6 5.7558 0.0149 0.0005 7 8 6.3671 -0.8549 0.5907 8 7 6.4262 0.9841 -0.6535 9 6 5.6963 2.1083 -1.2449 10 6 5.9015 3.3400 -0.4012 11 1 6.5146 3.2904 0.4865 12 6 5.3065 4.5301 -0.7626 13 7 4.5603 4.5906 -1.8439 14 14 5.5615 6.0571 0.2828 15 1 6.4365 5.7268 1.4364 16 1 6.2014 7.1171 -0.5369 17 1 4.2488 6.5410 0.7805 18 6 7.8845 0.9134 -0.7732 19 6 8.2565 0.0083 -1.9493 20 6 7.7737 0.6439 -3.2545 21 6 9.7758 -0.1658 -1.9982 22 6 3.5804 -1.2045 0.0005 23 8 4.2560 -2.3809 -0.0051 24 6 2.1933 -1.1979 0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3632 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6498 2.1343 -0.0006 29 1 4.1060 2.1538 0.0001 30 1 6.0675 2.2924 -2.2531 31 1 4.6336 1.8697 -1.2871 32 1 4.1421 5.4280 -2.0983 33 1 8.2840 1.9132 -0.9435 34 1 8.3051 0.5060 0.1462 35 1 7.7831 -0.9653 -1.8223 36 1 8.0383 -0.0012 -4.0924 37 1 6.6913 0.7679 -3.2197 38 1 8.2471 1.6175 -3.3815 39 1 10.1198 -0.6186 -1.0683 40 1 10.0408 -0.8102 -2.8363 41 1 10.2491 0.8079 -2.1251 42 1 4.4556 -2.7241 0.8766 43 1 1.6495 -2.1309 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044289199.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:02 Heat of formation + Delta-G solvation = -68.126108 kcal Electronic energy + Delta-G solvation = -24286.317562 eV Core-core repulsion = 20910.207432 eV Total energy + Delta-G solvation = -3376.110130 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.64562 -39.83183 -38.04096 -37.38007 -35.92756 -34.28267 -33.31105 -30.91574 -29.49637 -28.78469 -28.04372 -26.71573 -24.93733 -23.59129 -22.85820 -21.56563 -20.39137 -18.82052 -18.58044 -18.06275 -17.51494 -16.54005 -16.45387 -16.33855 -16.12839 -15.80954 -15.30962 -15.03243 -14.56146 -14.37421 -14.33593 -14.12440 -13.72715 -13.54941 -13.15017 -13.04011 -13.00929 -12.84734 -12.77306 -12.63246 -12.41841 -12.24136 -12.10750 -12.07487 -11.80615 -11.62283 -11.57662 -11.40354 -10.75011 -10.52063 -9.63545 -9.59283 -9.34036 -8.21657 -6.36990 -0.06545 0.35910 1.39347 1.43587 1.53395 1.87491 2.27080 2.42266 2.75343 3.06847 3.27057 3.65838 3.93159 4.00761 4.02567 4.06066 4.16467 4.34302 4.44758 4.59407 4.64484 4.68589 4.76029 4.86809 4.87917 4.91846 4.94184 4.99321 5.02440 5.08338 5.15472 5.22926 5.28285 5.35545 5.38939 5.43775 5.44436 5.62778 5.67083 5.83327 5.92779 6.02858 6.57119 6.78920 6.79234 7.25889 7.37896 8.82851 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.009752 B = 0.008024 C = 0.004912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2870.611425 B = 3488.746941 C = 5698.414310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.042 4.042 3 C -0.152 4.152 4 C -0.083 4.083 5 C -0.198 4.198 6 C 0.554 3.446 7 O -0.587 6.587 8 N -0.589 5.589 9 C 0.218 3.782 10 C -0.549 4.549 11 H 0.050 0.950 12 C 0.032 3.968 13 N -0.907 5.907 14 Si 0.953 3.047 15 H -0.274 1.274 16 H -0.278 1.278 17 H -0.274 1.274 18 C 0.125 3.875 19 C -0.104 4.104 20 C -0.138 4.138 21 C -0.133 4.133 22 C 0.150 3.850 23 O -0.499 6.499 24 C -0.164 4.164 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.137 0.863 29 H 0.159 0.841 30 H 0.018 0.982 31 H 0.065 0.935 32 H 0.270 0.730 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.048 0.952 36 H 0.067 0.933 37 H 0.033 0.967 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.406 0.594 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.144 -7.776 1.325 8.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.043 4.043 3 C -0.170 4.170 4 C -0.101 4.101 5 C -0.201 4.201 6 C 0.344 3.656 7 O -0.470 6.470 8 N -0.317 5.317 9 C 0.098 3.902 10 C -0.587 4.587 11 H 0.069 0.931 12 C -0.170 4.170 13 N -0.545 5.545 14 Si 0.778 3.222 15 H -0.199 1.199 16 H -0.203 1.203 17 H -0.199 1.199 18 C 0.002 3.998 19 C -0.124 4.124 20 C -0.195 4.195 21 C -0.191 4.191 22 C 0.104 3.896 23 O -0.312 6.312 24 C -0.182 4.182 25 H 0.103 0.897 26 H 0.107 0.893 27 H 0.097 0.903 28 H 0.154 0.846 29 H 0.176 0.824 30 H 0.036 0.964 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.265 0.735 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -3.940 -8.015 0.891 8.976 hybrid contribution 0.449 1.080 0.816 1.426 sum -3.491 -6.936 1.707 7.951 Atomic orbital electron populations 1.20919 0.87761 1.04412 1.03722 1.20365 0.98227 0.91547 0.94149 1.21247 0.93280 0.99055 1.03369 1.22481 0.95931 0.98826 0.92866 1.20430 0.93194 0.95126 1.11382 1.18424 0.87730 0.81015 0.78435 1.90592 1.70440 1.39597 1.46395 1.48061 1.07638 1.23045 1.52950 1.20108 0.94162 0.82643 0.93257 1.21561 1.31729 0.94811 1.10593 0.93139 1.25567 0.94337 1.01101 0.96000 1.70020 1.31891 1.27935 1.24666 0.85588 0.78266 0.79487 0.78860 1.19909 1.20333 1.19910 1.21463 0.79831 1.00282 0.98209 1.21407 0.98024 0.97987 0.94952 1.21798 1.00254 1.00704 0.96738 1.21690 0.92589 1.02474 1.02318 1.18605 0.90485 0.83834 0.96657 1.84607 1.76821 1.34715 1.35021 1.21395 0.91628 0.99781 1.05381 0.89667 0.89316 0.90253 0.84557 0.82355 0.96364 0.91836 0.92064 0.90373 0.92042 0.93318 0.91389 0.94794 0.92523 0.92476 0.91098 0.91705 0.73454 0.82285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.03 10.00 71.24 0.71 -1.32 16 2 C -0.04 -1.18 5.88 -19.83 -0.12 -1.29 16 3 C -0.15 -5.17 9.67 22.24 0.22 -4.95 16 4 C -0.08 -3.47 7.42 22.52 0.17 -3.30 16 5 C -0.20 -8.38 5.53 -20.01 -0.11 -8.49 16 6 C 0.55 25.71 7.22 86.69 0.63 26.34 16 7 O -0.59 -28.30 15.57 13.25 0.21 -28.09 16 8 N -0.59 -26.88 2.21 -829.93 -1.84 -28.71 16 9 C 0.22 10.72 4.13 85.63 0.35 11.08 16 10 C -0.55 -28.42 7.58 25.60 0.19 -28.22 16 11 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 12 C 0.03 1.63 5.46 84.66 0.46 2.09 16 13 N -0.91 -48.02 13.29 21.45 0.28 -47.73 16 14 Si 0.95 40.86 29.54 68.60 2.03 42.89 16 15 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 16 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 17 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 18 C 0.12 5.04 4.74 86.38 0.41 5.45 16 19 C -0.10 -3.61 3.07 -10.80 -0.03 -3.64 16 20 C -0.14 -4.70 8.44 71.98 0.61 -4.09 16 21 C -0.13 -3.55 9.19 71.98 0.66 -2.89 16 22 C 0.15 5.41 6.68 22.84 0.15 5.56 16 23 O -0.50 -17.13 12.11 -72.45 -0.88 -18.01 16 24 C -0.16 -4.69 9.62 22.34 0.21 -4.48 16 25 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 26 H 0.09 1.23 8.08 -2.39 -0.02 1.22 16 27 H 0.08 1.31 8.08 -2.39 -0.02 1.29 16 28 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 29 H 0.16 7.58 3.97 -2.91 -0.01 7.57 16 30 H 0.02 0.96 6.23 -2.39 -0.01 0.94 16 31 H 0.06 3.24 3.71 -3.24 -0.01 3.22 16 32 H 0.27 13.47 8.31 -92.71 -0.77 12.70 16 33 H 0.08 3.16 7.88 -2.39 -0.02 3.14 16 34 H 0.06 2.51 7.55 -2.39 -0.02 2.49 16 35 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 37 H 0.03 1.33 6.14 -2.39 -0.01 1.32 16 38 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 42 H 0.41 10.93 9.06 -74.06 -0.67 10.26 16 43 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -63.04 348.60 4.66 -58.38 By element: Atomic # 1 Polarization: 33.09 SS G_CDS: 0.34 Total: 33.44 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: 4.52 Total: -12.15 kcal Atomic # 7 Polarization: -74.89 SS G_CDS: -1.55 Total: -76.45 kcal Atomic # 8 Polarization: -45.43 SS G_CDS: -0.67 Total: -46.10 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.89 kcal Total: -63.04 4.66 -58.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044289199.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.750 kcal (2) G-P(sol) polarization free energy of solvation -63.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds