Wall clock time and date at job start Tue Mar 31 2020 06:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38547 * 119.85018 * 2 1 4 4 C 1.38061 * 120.39262 * 179.97438 * 3 2 1 5 5 C 1.38714 * 120.07964 * 0.02596 * 4 3 2 6 6 O 1.35654 * 120.14436 * 179.97438 * 5 4 3 7 7 C 1.40133 * 119.70210 * 359.97438 * 5 4 3 8 8 C 1.47534 * 120.19085 * 179.97438 * 7 5 4 9 9 O 1.21583 * 119.99910 * 26.00135 * 8 7 5 10 10 N 1.34777 * 119.99549 * 206.00144 * 8 7 5 11 11 C 1.46494 * 120.00659 * 2.39746 * 10 8 7 12 12 C 1.50692 * 109.47577 * 253.46464 * 11 10 8 13 13 H 1.08002 * 119.99852 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00568 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00226 * 179.97438 * 14 12 11 16 16 Si 1.86808 * 119.99591 * 0.02562 * 14 12 11 17 17 H 1.48493 * 109.47231 * 89.99844 * 16 14 12 18 18 H 1.48502 * 109.46875 * 209.99942 * 16 14 12 19 19 H 1.48498 * 109.47034 * 329.99699 * 16 14 12 20 20 C 1.46507 * 119.99855 * 182.39911 * 10 8 7 21 21 C 1.53001 * 109.47026 * 263.75289 * 20 10 8 22 22 C 1.52997 * 109.47226 * 65.38420 * 21 20 10 23 23 C 1.52999 * 109.46768 * 185.38162 * 21 20 10 24 24 C 1.37789 * 119.85060 * 180.24121 * 2 1 3 25 25 H 1.08999 * 109.47291 * 89.99337 * 1 2 3 26 26 H 1.09000 * 109.46992 * 209.99750 * 1 2 3 27 27 H 1.09007 * 109.46845 * 329.99635 * 1 2 3 28 28 H 1.08000 * 119.80763 * 359.96121 * 3 2 1 29 29 H 1.07994 * 119.95893 * 180.02562 * 4 3 2 30 30 H 0.96701 * 113.99966 * 270.02016 * 6 5 4 31 31 H 1.09003 * 109.46850 * 13.47019 * 11 10 8 32 32 H 1.09007 * 109.47263 * 133.45958 * 11 10 8 33 33 H 0.97006 * 119.99727 * 180.02562 * 15 14 12 34 34 H 1.09006 * 109.47027 * 23.74537 * 20 10 8 35 35 H 1.08994 * 109.47184 * 143.74723 * 20 10 8 36 36 H 1.08994 * 109.46892 * 305.37844 * 21 20 10 37 37 H 1.08998 * 109.47614 * 61.97094 * 22 21 20 38 38 H 1.09003 * 109.46992 * 181.97161 * 22 21 20 39 39 H 1.08998 * 109.46936 * 301.96745 * 22 21 20 40 40 H 1.08998 * 109.47691 * 59.99797 * 23 21 20 41 41 H 1.09004 * 109.46897 * 179.97438 * 23 21 20 42 42 H 1.09004 * 109.47664 * 299.99508 * 23 21 20 43 43 H 1.08002 * 120.04523 * 0.04073 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.2017 0.0000 4 6 3.5771 1.2147 0.0005 5 6 4.2837 0.0210 0.0005 6 8 5.6402 0.0323 0.0005 7 6 3.5899 -1.1965 0.0005 8 6 4.3306 -2.4725 0.0000 9 8 5.4544 -2.5232 0.4611 10 7 3.7613 -3.5818 -0.5118 11 6 2.4282 -3.5095 -1.1149 12 6 1.4239 -4.1505 -0.1922 13 1 1.7465 -4.5702 0.7492 14 6 0.0933 -4.2012 -0.5497 15 7 -0.7831 -4.7611 0.2554 16 14 -0.4645 -3.4760 -2.1784 17 1 -0.3977 -4.5188 -3.2334 18 1 -1.8618 -2.9896 -2.0509 19 1 0.4225 -2.3430 -2.5454 20 6 4.4757 -4.8600 -0.4649 21 6 5.1957 -5.0909 -1.7950 22 6 6.2867 -4.0333 -1.9746 23 6 5.8300 -6.4832 -1.7965 24 6 2.1928 -1.1951 -0.0050 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6510 2.1337 -0.0006 29 1 4.1075 2.1554 0.0009 30 1 6.0335 0.0359 -0.8829 31 1 2.1587 -2.4658 -1.2767 32 1 2.4323 -4.0358 -2.0695 33 1 -1.7192 -4.7971 0.0036 34 1 5.2056 -4.8388 0.3444 35 1 3.7645 -5.6675 -0.2917 36 1 4.4796 -5.0170 -2.6134 37 1 7.0217 -4.1300 -1.1756 38 1 6.7763 -4.1764 -2.9380 39 1 5.8392 -3.0401 -1.9385 40 1 5.0529 -7.2367 -1.6684 41 1 6.3426 -6.6479 -2.7443 42 1 6.5462 -6.5572 -0.9781 43 1 1.6511 -2.1294 -0.0096 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048151494.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:37 Heat of formation + Delta-G solvation = -41.290701 kcal Electronic energy + Delta-G solvation = -24661.938678 eV Core-core repulsion = 21286.992219 eV Total energy + Delta-G solvation = -3374.946460 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.26202 -38.39830 -36.78436 -35.80774 -34.40343 -32.47897 -31.43366 -30.83448 -28.30658 -26.82875 -25.99392 -25.90348 -23.30204 -22.28667 -21.52157 -19.86357 -18.79087 -17.64587 -17.15737 -16.55583 -15.88451 -15.43525 -15.07034 -14.67827 -14.32242 -14.18975 -13.85534 -13.61503 -13.44836 -13.20797 -12.86439 -12.69922 -12.51876 -12.21162 -11.92885 -11.64311 -11.56486 -11.44489 -11.29720 -11.13676 -11.00554 -10.90396 -10.61501 -10.56407 -10.28206 -10.17416 -9.96787 -9.71482 -9.02358 -8.91440 -8.42177 -8.09263 -7.70371 -6.36784 -4.39545 1.26400 1.62920 3.07662 3.16153 3.18555 3.40444 3.80881 4.10348 4.13295 4.52652 4.91597 5.07448 5.16571 5.24554 5.27519 5.30678 5.44461 5.56968 5.72269 5.87684 5.91540 5.96980 6.00075 6.02270 6.04592 6.15978 6.26756 6.33196 6.35517 6.38908 6.43058 6.48173 6.54343 6.62608 6.65278 6.74413 6.77270 6.95168 7.21652 7.22742 7.41018 7.96979 8.03224 8.36243 8.71594 8.93650 9.21279 10.74432 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.010320 B = 0.009451 C = 0.005451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.617749 B = 2962.091707 C = 5135.429824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.113 4.113 3 C -0.087 4.087 4 C -0.168 4.168 5 C 0.147 3.853 6 O -0.480 6.480 7 C -0.158 4.158 8 C 0.556 3.444 9 O -0.544 6.544 10 N -0.582 5.582 11 C 0.178 3.822 12 C -0.544 4.544 13 H 0.083 0.917 14 C 0.083 3.917 15 N -0.879 5.879 16 Si 0.858 3.142 17 H -0.271 1.271 18 H -0.278 1.278 19 H -0.258 1.258 20 C 0.125 3.875 21 C -0.113 4.113 22 C -0.134 4.134 23 C -0.141 4.141 24 C -0.087 4.087 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.062 0.938 28 H 0.122 0.878 29 H 0.126 0.874 30 H 0.383 0.617 31 H 0.063 0.937 32 H 0.023 0.977 33 H 0.269 0.731 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.041 0.959 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.806 6.953 -5.629 10.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.113 4.113 3 C -0.106 4.106 4 C -0.187 4.187 5 C 0.101 3.899 6 O -0.289 6.289 7 C -0.162 4.162 8 C 0.345 3.655 9 O -0.424 6.424 10 N -0.312 5.312 11 C 0.057 3.943 12 C -0.582 4.582 13 H 0.101 0.899 14 C -0.123 4.123 15 N -0.515 5.515 16 Si 0.684 3.316 17 H -0.197 1.197 18 H -0.204 1.204 19 H -0.182 1.182 20 C 0.001 3.999 21 C -0.132 4.132 22 C -0.192 4.192 23 C -0.199 4.199 24 C -0.104 4.104 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.081 0.919 28 H 0.140 0.860 29 H 0.144 0.856 30 H 0.239 0.761 31 H 0.080 0.920 32 H 0.041 0.959 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 6.118 6.846 -4.749 10.337 hybrid contribution -0.519 0.329 -1.389 1.519 sum 5.600 7.175 -6.138 10.978 Atomic orbital electron populations 1.20799 0.90990 1.03168 1.02197 1.19956 0.96535 0.92817 1.02009 1.21032 0.93475 0.97653 0.98419 1.21204 0.94419 0.97234 1.05835 1.18476 0.83019 0.90967 0.97432 1.84807 1.15375 1.96240 1.32451 1.20445 0.94409 0.93485 1.07831 1.18028 0.85499 0.83566 0.78442 1.90725 1.18712 1.85540 1.47383 1.47726 1.18465 1.07365 1.57646 1.20665 0.80028 0.99384 0.94207 1.21321 0.91321 1.39204 1.06364 0.89864 1.24889 0.96468 0.94381 0.96526 1.69885 1.02953 1.42223 1.36389 0.87111 0.79109 0.80686 0.84722 1.19673 1.20354 1.18240 1.21410 0.95888 0.85899 0.96654 1.21492 0.97557 0.95159 0.99004 1.21735 0.98266 0.98884 1.00276 1.21744 1.00566 0.96306 1.01302 1.23200 0.93339 1.02049 0.91768 0.91616 0.90421 0.91860 0.85974 0.85569 0.76134 0.92043 0.95942 0.92045 0.90556 0.89955 0.91267 0.92526 0.93990 0.93020 0.92511 0.93018 0.92751 0.78557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.75 10.00 36.00 0.36 -1.39 16 2 C -0.11 -1.93 5.87 -104.67 -0.61 -2.54 16 3 C -0.09 -1.28 9.68 -39.53 -0.38 -1.66 16 4 C -0.17 -2.53 9.98 -39.47 -0.39 -2.92 16 5 C 0.15 2.60 6.69 -38.69 -0.26 2.34 16 6 O -0.48 -8.06 11.90 -38.65 -0.46 -8.52 16 7 C -0.16 -3.17 5.58 -104.85 -0.58 -3.76 16 8 C 0.56 11.87 6.15 -12.47 -0.08 11.80 16 9 O -0.54 -12.37 13.99 -14.70 -0.21 -12.58 16 10 N -0.58 -12.09 2.29 -176.29 -0.40 -12.49 16 11 C 0.18 3.88 3.76 -5.20 -0.02 3.86 16 12 C -0.54 -13.63 7.72 -34.44 -0.27 -13.90 16 13 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 14 C 0.08 2.11 5.42 -17.82 -0.10 2.01 16 15 N -0.88 -24.05 13.96 55.43 0.77 -23.27 16 16 Si 0.86 18.66 27.47 -169.99 -4.67 13.99 16 17 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 18 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 19 H -0.26 -5.29 6.54 56.52 0.37 -4.92 16 20 C 0.12 2.33 4.89 -4.04 -0.02 2.31 16 21 C -0.11 -1.78 3.12 -90.62 -0.28 -2.06 16 22 C -0.13 -2.08 8.26 37.16 0.31 -1.78 16 23 C -0.14 -1.85 9.19 37.16 0.34 -1.51 16 24 C -0.09 -1.72 7.10 -39.20 -0.28 -2.00 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.08 1.31 8.08 -51.93 -0.42 0.89 16 27 H 0.06 0.78 8.08 -51.92 -0.42 0.36 16 28 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 29 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.38 4.69 9.06 45.56 0.41 5.10 16 31 H 0.06 1.34 3.01 -52.43 -0.16 1.18 16 32 H 0.02 0.49 7.32 -51.92 -0.38 0.10 16 33 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 34 H 0.08 1.46 7.27 -51.93 -0.38 1.08 16 35 H 0.08 1.58 7.85 -51.93 -0.41 1.17 16 36 H 0.07 1.13 7.89 -51.93 -0.41 0.72 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.05 0.89 6.35 -51.93 -0.33 0.56 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.20 4.36 3.23 -52.49 -0.17 4.19 16 LS Contribution 343.28 15.07 5.17 5.17 Total: -1.00 -29.38 343.28 -7.69 -37.07 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -5.63 Total: 11.82 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -2.27 Total: -11.19 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.37 Total: -35.77 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.67 Total: -21.10 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -4.67 Total: 13.99 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.38 -7.69 -37.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048151494.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.222 kcal (2) G-P(sol) polarization free energy of solvation -29.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds