Wall clock time and date at job start Tue Mar 31 2020 06:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38547 * 119.85018 * 2 1 4 4 C 1.38061 * 120.39262 * 179.97438 * 3 2 1 5 5 C 1.38714 * 120.07964 * 0.02596 * 4 3 2 6 6 O 1.35654 * 120.14436 * 179.97438 * 5 4 3 7 7 C 1.40133 * 119.70210 * 359.97438 * 5 4 3 8 8 C 1.47534 * 120.19085 * 179.97438 * 7 5 4 9 9 O 1.21583 * 119.99910 * 26.00135 * 8 7 5 10 10 N 1.34777 * 119.99549 * 206.00144 * 8 7 5 11 11 C 1.46494 * 120.00659 * 2.39746 * 10 8 7 12 12 C 1.50692 * 109.47577 * 253.46464 * 11 10 8 13 13 H 1.08002 * 119.99852 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00568 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00226 * 179.97438 * 14 12 11 16 16 Si 1.86808 * 119.99591 * 0.02562 * 14 12 11 17 17 H 1.48493 * 109.47231 * 89.99844 * 16 14 12 18 18 H 1.48502 * 109.46875 * 209.99942 * 16 14 12 19 19 H 1.48498 * 109.47034 * 329.99699 * 16 14 12 20 20 C 1.46507 * 119.99855 * 182.39911 * 10 8 7 21 21 C 1.53001 * 109.47026 * 263.75289 * 20 10 8 22 22 C 1.52997 * 109.47226 * 65.38420 * 21 20 10 23 23 C 1.52999 * 109.46768 * 185.38162 * 21 20 10 24 24 C 1.37789 * 119.85060 * 180.24121 * 2 1 3 25 25 H 1.08999 * 109.47291 * 89.99337 * 1 2 3 26 26 H 1.09000 * 109.46992 * 209.99750 * 1 2 3 27 27 H 1.09007 * 109.46845 * 329.99635 * 1 2 3 28 28 H 1.08000 * 119.80763 * 359.96121 * 3 2 1 29 29 H 1.07994 * 119.95893 * 180.02562 * 4 3 2 30 30 H 0.96701 * 113.99966 * 270.02016 * 6 5 4 31 31 H 1.09003 * 109.46850 * 13.47019 * 11 10 8 32 32 H 1.09007 * 109.47263 * 133.45958 * 11 10 8 33 33 H 0.97006 * 119.99727 * 180.02562 * 15 14 12 34 34 H 1.09006 * 109.47027 * 23.74537 * 20 10 8 35 35 H 1.08994 * 109.47184 * 143.74723 * 20 10 8 36 36 H 1.08994 * 109.46892 * 305.37844 * 21 20 10 37 37 H 1.08998 * 109.47614 * 61.97094 * 22 21 20 38 38 H 1.09003 * 109.46992 * 181.97161 * 22 21 20 39 39 H 1.08998 * 109.46936 * 301.96745 * 22 21 20 40 40 H 1.08998 * 109.47691 * 59.99797 * 23 21 20 41 41 H 1.09004 * 109.46897 * 179.97438 * 23 21 20 42 42 H 1.09004 * 109.47664 * 299.99508 * 23 21 20 43 43 H 1.08002 * 120.04523 * 0.04073 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.2017 0.0000 4 6 3.5771 1.2147 0.0005 5 6 4.2837 0.0210 0.0005 6 8 5.6402 0.0323 0.0005 7 6 3.5899 -1.1965 0.0005 8 6 4.3306 -2.4725 0.0000 9 8 5.4544 -2.5232 0.4611 10 7 3.7613 -3.5818 -0.5118 11 6 2.4282 -3.5095 -1.1149 12 6 1.4239 -4.1505 -0.1922 13 1 1.7465 -4.5702 0.7492 14 6 0.0933 -4.2012 -0.5497 15 7 -0.7831 -4.7611 0.2554 16 14 -0.4645 -3.4760 -2.1784 17 1 -0.3977 -4.5188 -3.2334 18 1 -1.8618 -2.9896 -2.0509 19 1 0.4225 -2.3430 -2.5454 20 6 4.4757 -4.8600 -0.4649 21 6 5.1957 -5.0909 -1.7950 22 6 6.2867 -4.0333 -1.9746 23 6 5.8300 -6.4832 -1.7965 24 6 2.1928 -1.1951 -0.0050 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6510 2.1337 -0.0006 29 1 4.1075 2.1554 0.0009 30 1 6.0335 0.0359 -0.8829 31 1 2.1587 -2.4658 -1.2767 32 1 2.4323 -4.0358 -2.0695 33 1 -1.7192 -4.7971 0.0036 34 1 5.2056 -4.8388 0.3444 35 1 3.7645 -5.6675 -0.2917 36 1 4.4796 -5.0170 -2.6134 37 1 7.0217 -4.1300 -1.1756 38 1 6.7763 -4.1764 -2.9380 39 1 5.8392 -3.0401 -1.9385 40 1 5.0529 -7.2367 -1.6684 41 1 6.3426 -6.6479 -2.7443 42 1 6.5462 -6.5572 -0.9781 43 1 1.6511 -2.1294 -0.0096 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048151494.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:37 Heat of formation + Delta-G solvation = -58.507642 kcal Electronic energy + Delta-G solvation = -24662.685261 eV Core-core repulsion = 21286.992219 eV Total energy + Delta-G solvation = -3375.693042 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.74188 -39.83272 -38.14656 -37.29603 -35.96182 -34.35126 -32.70867 -32.17612 -30.12121 -28.04856 -27.40801 -27.19475 -24.93071 -23.89447 -22.84336 -21.20302 -20.28486 -19.08581 -19.02679 -18.09316 -17.42829 -16.83396 -16.46278 -16.26573 -15.90178 -15.58208 -15.30456 -15.00730 -14.76950 -14.68137 -14.34690 -14.24591 -13.82221 -13.65197 -13.18115 -13.07542 -12.94636 -12.79107 -12.70430 -12.56556 -12.49974 -12.35194 -12.05437 -11.86789 -11.78471 -11.72415 -11.57807 -11.42403 -10.86461 -10.58409 -9.84161 -9.47697 -9.29382 -8.35472 -6.43400 -0.08868 0.32182 1.35076 1.37582 1.46825 1.90133 2.24169 2.28863 2.72175 2.96491 3.28659 3.61941 3.92549 3.98703 3.99877 4.04635 4.17092 4.38818 4.44475 4.56129 4.64233 4.68587 4.70921 4.77236 4.80930 4.83214 4.86339 4.93938 5.00565 5.04054 5.11010 5.17846 5.21706 5.29733 5.33279 5.39337 5.40616 5.44801 5.65707 5.73209 5.92845 6.10759 6.59046 6.65696 6.82995 7.17545 7.32392 8.79852 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.010320 B = 0.009451 C = 0.005451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.617749 B = 2962.091707 C = 5135.429824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.120 4.120 3 C -0.070 4.070 4 C -0.155 4.155 5 C 0.141 3.859 6 O -0.492 6.492 7 C -0.189 4.189 8 C 0.551 3.449 9 O -0.567 6.567 10 N -0.587 5.587 11 C 0.190 3.810 12 C -0.541 4.541 13 H 0.033 0.967 14 C 0.036 3.964 15 N -0.928 5.928 16 Si 0.919 3.081 17 H -0.267 1.267 18 H -0.271 1.271 19 H -0.236 1.236 20 C 0.122 3.878 21 C -0.107 4.107 22 C -0.126 4.126 23 C -0.136 4.136 24 C -0.113 4.113 25 H 0.076 0.924 26 H 0.049 0.951 27 H 0.096 0.904 28 H 0.168 0.832 29 H 0.163 0.837 30 H 0.401 0.599 31 H 0.074 0.926 32 H 0.029 0.971 33 H 0.272 0.728 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.047 0.953 38 H 0.068 0.932 39 H 0.031 0.969 40 H 0.056 0.944 41 H 0.074 0.926 42 H 0.057 0.943 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.090 9.825 -7.751 13.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.120 4.120 3 C -0.087 4.087 4 C -0.173 4.173 5 C 0.095 3.905 6 O -0.304 6.304 7 C -0.193 4.193 8 C 0.341 3.659 9 O -0.449 6.449 10 N -0.316 5.316 11 C 0.068 3.932 12 C -0.579 4.579 13 H 0.051 0.949 14 C -0.165 4.165 15 N -0.566 5.566 16 Si 0.741 3.259 17 H -0.192 1.192 18 H -0.196 1.196 19 H -0.159 1.159 20 C -0.001 4.001 21 C -0.126 4.126 22 C -0.183 4.183 23 C -0.193 4.193 24 C -0.131 4.131 25 H 0.094 0.906 26 H 0.068 0.932 27 H 0.115 0.885 28 H 0.185 0.815 29 H 0.181 0.819 30 H 0.260 0.740 31 H 0.091 0.909 32 H 0.047 0.953 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.050 0.950 40 H 0.075 0.925 41 H 0.093 0.907 42 H 0.076 0.924 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 6.425 9.712 -6.884 13.527 hybrid contribution -0.549 -0.527 -0.603 0.971 sum 5.876 9.184 -7.487 13.226 Atomic orbital electron populations 1.20842 0.89860 1.03470 1.02962 1.20209 0.97486 0.92740 1.01575 1.21477 0.93462 0.98274 0.95531 1.21592 0.94718 0.97429 1.03580 1.18692 0.83387 0.91096 0.97287 1.84749 1.15201 1.96199 1.34237 1.20495 0.94679 0.93646 1.10465 1.18402 0.85424 0.84286 0.77794 1.90686 1.19699 1.86050 1.48441 1.47798 1.18203 1.08042 1.57558 1.20490 0.79640 0.99668 0.93380 1.21292 0.92544 1.38983 1.05059 0.94877 1.25636 0.96174 0.94504 1.00165 1.70024 1.03451 1.44295 1.38801 0.86132 0.79204 0.80658 0.79877 1.19233 1.19597 1.15908 1.21501 0.95341 0.84840 0.98427 1.21446 0.97471 0.97092 0.96614 1.21645 0.97751 0.97511 1.01385 1.21708 1.00619 0.94292 1.02720 1.22909 0.93366 1.02297 0.94498 0.90551 0.93232 0.88483 0.81468 0.81938 0.74030 0.90853 0.95327 0.91863 0.91677 0.91483 0.91552 0.93399 0.91300 0.95016 0.92478 0.90718 0.92418 0.81467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.22 10.00 71.24 0.71 -2.50 16 2 C -0.12 -3.82 5.87 -19.90 -0.12 -3.93 16 3 C -0.07 -1.72 9.68 22.30 0.22 -1.50 16 4 C -0.16 -4.02 9.98 22.34 0.22 -3.80 16 5 C 0.14 4.76 6.69 22.84 0.15 4.92 16 6 O -0.49 -15.85 11.90 -70.58 -0.84 -16.69 16 7 C -0.19 -7.62 5.58 -20.01 -0.11 -7.73 16 8 C 0.55 24.32 6.15 86.70 0.53 24.85 16 9 O -0.57 -26.63 13.99 15.14 0.21 -26.42 16 10 N -0.59 -25.43 2.29 -829.92 -1.90 -27.33 16 11 C 0.19 8.49 3.76 85.63 0.32 8.81 16 12 C -0.54 -28.60 7.72 25.60 0.20 -28.40 16 13 H 0.03 2.03 8.06 -2.91 -0.02 2.01 16 14 C 0.04 1.91 5.42 84.65 0.46 2.37 16 15 N -0.93 -53.02 13.96 21.45 0.30 -52.72 16 16 Si 0.92 38.42 27.47 68.60 1.88 40.30 16 17 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 18 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 19 H -0.24 -8.94 6.54 99.48 0.65 -8.29 16 20 C 0.12 4.78 4.89 86.38 0.42 5.20 16 21 C -0.11 -3.36 3.12 -10.79 -0.03 -3.40 16 22 C -0.13 -3.82 8.26 71.98 0.59 -3.23 16 23 C -0.14 -3.41 9.19 71.98 0.66 -2.75 16 24 C -0.11 -4.50 7.10 22.52 0.16 -4.34 16 25 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.05 1.66 8.08 -2.39 -0.02 1.64 16 27 H 0.10 2.02 8.08 -2.38 -0.02 2.00 16 28 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 29 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 30 H 0.40 9.24 9.06 -74.06 -0.67 8.57 16 31 H 0.07 3.21 3.01 -2.86 -0.01 3.20 16 32 H 0.03 1.24 7.32 -2.38 -0.02 1.22 16 33 H 0.27 14.45 8.31 -92.70 -0.77 13.68 16 34 H 0.06 2.66 7.27 -2.38 -0.02 2.64 16 35 H 0.07 2.77 7.85 -2.39 -0.02 2.75 16 36 H 0.07 2.13 7.89 -2.39 -0.02 2.11 16 37 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.03 1.07 6.35 -2.39 -0.02 1.06 16 40 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 43 H 0.17 7.68 3.23 -2.91 -0.01 7.67 16 Total: -1.00 -67.73 343.28 4.34 -63.39 By element: Atomic # 1 Polarization: 34.61 SS G_CDS: 0.29 Total: 34.90 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: 4.39 Total: -15.43 kcal Atomic # 7 Polarization: -78.45 SS G_CDS: -1.60 Total: -80.05 kcal Atomic # 8 Polarization: -42.48 SS G_CDS: -0.63 Total: -43.11 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 1.88 Total: 40.30 kcal Total: -67.73 4.34 -63.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048151494.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.886 kcal (2) G-P(sol) polarization free energy of solvation -67.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds