Wall clock time and date at job start Tue Mar 31 2020 06:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38268 * 119.94321 * 2 1 4 4 C 1.38139 * 120.05510 * 179.97438 * 3 2 1 5 5 C 1.38733 * 119.94507 * 359.97438 * 4 3 2 6 6 O 1.35905 * 120.05258 * 179.97438 * 5 4 3 7 7 C 1.42901 * 116.99604 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47046 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.47242 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.47188 * 179.97438 * 9 8 7 11 11 O 1.21274 * 119.99891 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99647 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00592 * 0.02562 * 12 10 9 14 14 C 1.46500 * 119.99752 * 180.02562 * 12 10 9 15 15 C 1.50704 * 109.47143 * 90.00025 * 14 12 10 16 16 H 1.07995 * 120.00034 * 359.97438 * 15 14 12 17 17 C 1.37881 * 119.99747 * 180.02562 * 15 14 12 18 18 N 1.31512 * 119.99950 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99488 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47413 * 59.99643 * 19 17 15 21 21 H 1.48501 * 109.47016 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47254 * 299.99308 * 19 17 15 23 23 C 1.38723 * 119.88799 * 0.25807 * 5 4 3 24 24 C 1.38145 * 119.94323 * 359.49123 * 23 5 4 25 25 H 1.08999 * 109.46991 * 90.00243 * 1 2 3 26 26 H 1.09001 * 109.46891 * 210.00393 * 1 2 3 27 27 H 1.08994 * 109.47121 * 330.00356 * 1 2 3 28 28 H 1.08008 * 119.97007 * 359.94743 * 3 2 1 29 29 H 1.08001 * 120.02451 * 179.97438 * 4 3 2 30 30 H 1.08999 * 109.47144 * 300.00205 * 7 6 5 31 31 H 1.08998 * 109.47043 * 59.99803 * 7 6 5 32 32 H 1.08999 * 109.47084 * 299.99957 * 8 7 6 33 33 H 1.08996 * 109.47090 * 59.99784 * 8 7 6 34 34 H 1.08999 * 109.47046 * 299.99980 * 9 8 7 35 35 H 1.09006 * 109.46791 * 59.99742 * 9 8 7 36 36 H 1.09005 * 109.47254 * 89.99478 * 13 12 10 37 37 H 1.08994 * 109.47264 * 209.99987 * 13 12 10 38 38 H 1.09000 * 109.46882 * 330.00372 * 13 12 10 39 39 H 1.08999 * 109.47428 * 209.99941 * 14 12 10 40 40 H 1.09005 * 109.47258 * 329.99720 * 14 12 10 41 41 H 0.97000 * 119.99426 * 180.02562 * 18 17 15 42 42 H 1.08001 * 120.02769 * 179.72249 * 23 5 4 43 43 H 1.08006 * 119.97076 * 180.25587 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5786 1.2008 0.0005 5 6 4.2735 0.0000 0.0016 6 8 5.6325 0.0001 0.0016 7 6 6.2813 -1.2731 0.0022 8 6 7.7981 -1.0726 0.0027 9 6 8.4927 -2.4358 0.0027 10 6 9.9867 -2.2383 0.0026 11 8 10.4502 -1.1176 0.0021 12 7 10.8077 -3.3072 0.0021 13 6 10.2479 -4.6610 0.0010 14 6 12.2601 -3.1152 0.0025 15 6 12.7578 -3.0504 1.4235 16 1 12.0618 -3.1425 2.2442 17 6 14.1015 -2.8724 1.6759 18 7 14.9490 -2.7597 0.6765 19 14 14.7184 -2.7928 3.4373 20 1 14.3871 -4.0607 4.1356 21 1 16.1906 -2.5981 3.4378 22 1 14.0683 -1.6568 4.1386 23 6 3.5787 -1.2007 -0.0033 24 6 2.1973 -1.1980 0.0014 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5137 28 1 1.6558 2.1327 -0.0009 29 1 4.1172 2.1370 0.0001 30 1 5.9884 -1.8297 0.8924 31 1 5.9884 -1.8305 -0.8875 32 1 8.0913 -0.5158 -0.8873 33 1 8.0905 -0.5154 0.8926 34 1 8.1995 -2.9930 0.8925 35 1 8.2001 -2.9926 -0.8875 36 1 10.1092 -4.9960 -1.0270 37 1 10.9313 -5.3372 0.5144 38 1 9.2864 -4.6569 0.5145 39 1 12.7371 -3.9495 -0.5118 40 1 12.5038 -2.1849 -0.5106 41 1 15.8944 -2.6349 0.8541 42 1 4.1174 -2.1367 -0.0070 43 1 1.6559 -2.1326 0.0018 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060617484.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:39 Heat of formation + Delta-G solvation = -64.206064 kcal Electronic energy + Delta-G solvation = -21925.994797 eV Core-core repulsion = 18550.054652 eV Total energy + Delta-G solvation = -3375.940144 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.33930 -39.04932 -37.92175 -34.90192 -33.80628 -32.58612 -31.99985 -31.25649 -28.51265 -27.20244 -26.23182 -25.54597 -23.62800 -22.62288 -21.53444 -21.04855 -18.67898 -18.03626 -16.63399 -16.52373 -16.35718 -15.80913 -15.55283 -15.24281 -14.99018 -14.58694 -14.20192 -14.02298 -13.73005 -13.65345 -13.52118 -12.66328 -12.54753 -12.35709 -12.25301 -12.03830 -11.91787 -11.88742 -11.72609 -11.43750 -11.18743 -11.16264 -10.91481 -10.84112 -10.57163 -10.55003 -10.15877 -9.64750 -9.24679 -8.92174 -8.43331 -8.24177 -7.65084 -6.04252 -4.09171 1.10000 1.19312 2.99933 3.31737 3.36270 3.37604 3.44425 3.51316 4.00524 4.44644 4.52236 4.60338 4.70928 4.82613 4.85272 4.99121 5.04804 5.10603 5.18081 5.29223 5.29967 5.36571 5.38819 5.44912 5.47426 5.56101 5.63851 5.77097 5.81206 5.90597 6.05510 6.14047 6.14321 6.19810 6.34571 6.35694 6.58083 7.05020 7.28760 7.44186 7.53445 7.91904 8.23293 8.41078 8.89764 9.09009 9.55818 11.03782 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.033495 B = 0.002276 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.755832 B =12296.996406 C =12532.182630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.133 4.133 3 C -0.081 4.081 4 C -0.151 4.151 5 C 0.130 3.870 6 O -0.312 6.312 7 C 0.061 3.939 8 C -0.103 4.103 9 C -0.136 4.136 10 C 0.503 3.497 11 O -0.540 6.540 12 N -0.604 5.604 13 C 0.084 3.916 14 C 0.244 3.756 15 C -0.527 4.527 16 H 0.056 0.944 17 C 0.060 3.940 18 N -0.895 5.895 19 Si 0.899 3.101 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.276 1.276 23 C -0.207 4.207 24 C -0.081 4.081 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.127 0.873 29 H 0.131 0.869 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.044 0.956 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.032 0.968 40 H 0.044 0.956 41 H 0.264 0.736 42 H 0.129 0.871 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.124 0.225 -2.703 27.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.133 4.133 3 C -0.099 4.099 4 C -0.170 4.170 5 C 0.085 3.915 6 O -0.225 6.225 7 C -0.014 4.014 8 C -0.141 4.141 9 C -0.176 4.176 10 C 0.290 3.710 11 O -0.418 6.418 12 N -0.336 5.336 13 C -0.061 4.061 14 C 0.125 3.875 15 C -0.566 4.566 16 H 0.074 0.926 17 C -0.142 4.142 18 N -0.534 5.534 19 Si 0.727 3.273 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.226 4.226 24 C -0.099 4.099 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.145 0.855 29 H 0.149 0.851 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.062 0.938 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.050 0.950 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.147 0.853 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -26.500 0.981 -2.753 26.660 hybrid contribution 0.441 -0.427 0.998 1.171 sum -26.059 0.554 -1.756 26.124 Atomic orbital electron populations 1.20705 0.91184 1.02540 1.02050 1.19820 0.96161 0.93109 1.04191 1.20839 0.92980 0.97739 0.98386 1.20476 0.93777 0.96522 1.06189 1.19076 0.82694 0.94120 0.95648 1.86103 1.15919 1.32385 1.88117 1.22905 0.93645 0.83621 1.01213 1.21236 0.90007 0.97416 1.05454 1.21558 0.94176 0.98155 1.03720 1.20210 0.88012 0.85150 0.77649 1.90681 1.77566 1.23571 1.49976 1.48170 1.09349 1.04722 1.71401 1.21637 0.98867 0.85190 1.00374 1.19290 0.72509 0.98178 0.97494 1.21392 0.92650 1.50276 0.92273 0.92552 1.24949 0.96691 0.95064 0.97479 1.69923 1.03154 1.49485 1.30799 0.86546 0.77580 0.78591 0.84628 1.20271 1.21158 1.20161 1.21291 0.95360 0.97267 1.08655 1.20821 0.93293 0.97648 0.98101 0.91527 0.91802 0.91748 0.85515 0.85116 0.91977 0.92004 0.90025 0.89908 0.89261 0.89430 0.93765 0.90788 0.92463 0.95024 0.93823 0.92652 0.85345 0.85934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.01 36.01 0.36 -0.28 16 2 C -0.13 -1.13 5.88 -104.60 -0.62 -1.75 16 3 C -0.08 -0.72 9.69 -39.61 -0.38 -1.11 16 4 C -0.15 -1.60 9.99 -39.44 -0.39 -2.00 16 5 C 0.13 1.53 6.69 -39.22 -0.26 1.27 16 6 O -0.31 -4.08 10.14 -19.44 -0.20 -4.27 16 7 C 0.06 0.68 4.74 37.16 0.18 0.85 16 8 C -0.10 -1.42 4.87 -26.73 -0.13 -1.55 16 9 C -0.14 -1.87 4.25 -27.88 -0.12 -1.98 16 10 C 0.50 10.32 7.67 -10.98 -0.08 10.24 16 11 O -0.54 -13.64 15.56 5.56 0.09 -13.55 16 12 N -0.60 -12.75 2.86 -182.95 -0.52 -13.27 16 13 C 0.08 1.28 10.24 59.85 0.61 1.89 16 14 C 0.24 6.45 5.16 -5.19 -0.03 6.42 16 15 C -0.53 -15.07 9.39 -34.44 -0.32 -15.39 16 16 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -26.78 13.29 55.43 0.74 -26.05 16 19 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 C -0.21 -2.08 9.04 -39.44 -0.36 -2.44 16 24 C -0.08 -0.71 9.69 -39.61 -0.38 -1.10 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.33 8.08 -51.93 -0.42 -0.09 16 27 H 0.06 0.32 8.08 -51.93 -0.42 -0.09 16 28 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 29 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 30 H 0.06 0.60 7.67 -51.93 -0.40 0.20 16 31 H 0.06 0.58 7.65 -51.93 -0.40 0.18 16 32 H 0.08 1.23 8.10 -51.93 -0.42 0.81 16 33 H 0.08 1.29 8.10 -51.93 -0.42 0.87 16 34 H 0.09 1.05 7.40 -51.93 -0.38 0.66 16 35 H 0.09 0.97 8.11 -51.93 -0.42 0.55 16 36 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 38 H 0.06 0.69 6.44 -51.93 -0.33 0.36 16 39 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 40 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.13 1.09 6.30 -52.49 -0.33 0.76 16 43 H 0.12 0.82 8.06 -52.48 -0.42 0.39 16 LS Contribution 361.56 15.07 5.45 5.45 Total: -1.00 -34.36 361.56 -8.33 -42.68 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -6.83 Total: -2.69 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -2.03 Total: -5.28 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.21 Total: -39.32 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.11 Total: -17.83 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.36 -8.33 -42.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060617484.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.521 kcal (2) G-P(sol) polarization free energy of solvation -34.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds