Wall clock time and date at job start Tue Mar 31 2020 06:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38268 * 119.94321 * 2 1 4 4 C 1.38139 * 120.05510 * 179.97438 * 3 2 1 5 5 C 1.38733 * 119.94507 * 359.97438 * 4 3 2 6 6 O 1.35905 * 120.05258 * 179.97438 * 5 4 3 7 7 C 1.42901 * 116.99604 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47046 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.47242 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.47188 * 179.97438 * 9 8 7 11 11 O 1.21274 * 119.99891 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99647 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00592 * 0.02562 * 12 10 9 14 14 C 1.46500 * 119.99752 * 180.02562 * 12 10 9 15 15 C 1.50704 * 109.47143 * 90.00025 * 14 12 10 16 16 H 1.07995 * 120.00034 * 359.97438 * 15 14 12 17 17 C 1.37881 * 119.99747 * 180.02562 * 15 14 12 18 18 N 1.31512 * 119.99950 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99488 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47413 * 59.99643 * 19 17 15 21 21 H 1.48501 * 109.47016 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47254 * 299.99308 * 19 17 15 23 23 C 1.38723 * 119.88799 * 0.25807 * 5 4 3 24 24 C 1.38145 * 119.94323 * 359.49123 * 23 5 4 25 25 H 1.08999 * 109.46991 * 90.00243 * 1 2 3 26 26 H 1.09001 * 109.46891 * 210.00393 * 1 2 3 27 27 H 1.08994 * 109.47121 * 330.00356 * 1 2 3 28 28 H 1.08008 * 119.97007 * 359.94743 * 3 2 1 29 29 H 1.08001 * 120.02451 * 179.97438 * 4 3 2 30 30 H 1.08999 * 109.47144 * 300.00205 * 7 6 5 31 31 H 1.08998 * 109.47043 * 59.99803 * 7 6 5 32 32 H 1.08999 * 109.47084 * 299.99957 * 8 7 6 33 33 H 1.08996 * 109.47090 * 59.99784 * 8 7 6 34 34 H 1.08999 * 109.47046 * 299.99980 * 9 8 7 35 35 H 1.09006 * 109.46791 * 59.99742 * 9 8 7 36 36 H 1.09005 * 109.47254 * 89.99478 * 13 12 10 37 37 H 1.08994 * 109.47264 * 209.99987 * 13 12 10 38 38 H 1.09000 * 109.46882 * 330.00372 * 13 12 10 39 39 H 1.08999 * 109.47428 * 209.99941 * 14 12 10 40 40 H 1.09005 * 109.47258 * 329.99720 * 14 12 10 41 41 H 0.97000 * 119.99426 * 180.02562 * 18 17 15 42 42 H 1.08001 * 120.02769 * 179.72249 * 23 5 4 43 43 H 1.08006 * 119.97076 * 180.25587 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5786 1.2008 0.0005 5 6 4.2735 0.0000 0.0016 6 8 5.6325 0.0001 0.0016 7 6 6.2813 -1.2731 0.0022 8 6 7.7981 -1.0726 0.0027 9 6 8.4927 -2.4358 0.0027 10 6 9.9867 -2.2383 0.0026 11 8 10.4502 -1.1176 0.0021 12 7 10.8077 -3.3072 0.0021 13 6 10.2479 -4.6610 0.0010 14 6 12.2601 -3.1152 0.0025 15 6 12.7578 -3.0504 1.4235 16 1 12.0618 -3.1425 2.2442 17 6 14.1015 -2.8724 1.6759 18 7 14.9490 -2.7597 0.6765 19 14 14.7184 -2.7928 3.4373 20 1 14.3871 -4.0607 4.1356 21 1 16.1906 -2.5981 3.4378 22 1 14.0683 -1.6568 4.1386 23 6 3.5787 -1.2007 -0.0033 24 6 2.1973 -1.1980 0.0014 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5137 28 1 1.6558 2.1327 -0.0009 29 1 4.1172 2.1370 0.0001 30 1 5.9884 -1.8297 0.8924 31 1 5.9884 -1.8305 -0.8875 32 1 8.0913 -0.5158 -0.8873 33 1 8.0905 -0.5154 0.8926 34 1 8.1995 -2.9930 0.8925 35 1 8.2001 -2.9926 -0.8875 36 1 10.1092 -4.9960 -1.0270 37 1 10.9313 -5.3372 0.5144 38 1 9.2864 -4.6569 0.5145 39 1 12.7371 -3.9495 -0.5118 40 1 12.5038 -2.1849 -0.5106 41 1 15.8944 -2.6349 0.8541 42 1 4.1174 -2.1367 -0.0070 43 1 1.6559 -2.1326 0.0018 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060617484.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:39 Heat of formation + Delta-G solvation = -85.203615 kcal Electronic energy + Delta-G solvation = -21926.905319 eV Core-core repulsion = 18550.054652 eV Total energy + Delta-G solvation = -3376.850667 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.13370 -40.62188 -38.70768 -36.64195 -35.03975 -34.57951 -32.71572 -31.94096 -30.21509 -28.41205 -27.25997 -26.80094 -25.04544 -23.84724 -22.49454 -21.90133 -20.03158 -19.04669 -18.71119 -17.86493 -17.40118 -17.08570 -16.73213 -16.40018 -16.23252 -16.02782 -15.22445 -14.99730 -14.65634 -14.44339 -14.38201 -14.14506 -13.97688 -13.70332 -13.47090 -13.31746 -12.98621 -12.92848 -12.88913 -12.78074 -12.51333 -12.36326 -12.34874 -12.19290 -12.10279 -11.72883 -11.62272 -11.46921 -10.65606 -10.61894 -9.93779 -9.41456 -8.96962 -8.23544 -6.38762 0.41062 0.48001 1.35302 1.39975 1.47208 1.85137 2.08800 2.35666 2.58253 2.81697 3.05607 3.65074 3.88302 3.91530 3.97397 4.05147 4.12138 4.21188 4.37223 4.39161 4.45494 4.48429 4.49957 4.66046 4.72244 4.75614 4.86574 4.91055 4.98222 5.02033 5.07142 5.12868 5.18172 5.22785 5.26067 5.40563 5.43839 5.55272 5.71378 5.84011 5.92216 6.04987 6.50871 6.68696 6.80117 7.27246 7.49645 8.83231 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.033495 B = 0.002276 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.755832 B =12296.996406 C =12532.182630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.136 4.136 3 C -0.087 4.087 4 C -0.171 4.171 5 C 0.102 3.898 6 O -0.340 6.340 7 C 0.067 3.933 8 C -0.099 4.099 9 C -0.117 4.117 10 C 0.489 3.511 11 O -0.603 6.603 12 N -0.612 5.612 13 C 0.077 3.923 14 C 0.257 3.743 15 C -0.544 4.544 16 H 0.054 0.946 17 C 0.004 3.996 18 N -0.929 5.929 19 Si 0.969 3.031 20 H -0.258 1.258 21 H -0.278 1.278 22 H -0.279 1.279 23 C -0.212 4.212 24 C -0.087 4.087 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.147 0.853 29 H 0.127 0.873 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.100 0.900 39 H 0.024 0.976 40 H -0.005 1.005 41 H 0.267 0.733 42 H 0.145 0.855 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.141 -1.792 -1.759 30.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.136 4.136 3 C -0.105 4.105 4 C -0.190 4.190 5 C 0.057 3.943 6 O -0.254 6.254 7 C -0.007 4.007 8 C -0.137 4.137 9 C -0.156 4.156 10 C 0.279 3.721 11 O -0.485 6.485 12 N -0.344 5.344 13 C -0.065 4.065 14 C 0.135 3.865 15 C -0.582 4.582 16 H 0.072 0.928 17 C -0.195 4.195 18 N -0.568 5.568 19 Si 0.793 3.207 20 H -0.183 1.183 21 H -0.203 1.203 22 H -0.204 1.204 23 C -0.230 4.230 24 C -0.104 4.104 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.164 0.836 29 H 0.145 0.855 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.141 0.859 35 H 0.146 0.854 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.118 0.882 39 H 0.042 0.958 40 H 0.013 0.987 41 H 0.076 0.924 42 H 0.163 0.837 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -29.563 -1.087 -1.814 29.638 hybrid contribution 1.316 0.228 0.643 1.483 sum -28.247 -0.859 -1.171 28.284 Atomic orbital electron populations 1.20759 0.89167 1.03548 1.02889 1.20228 0.97730 0.92861 1.02772 1.21125 0.92374 0.99091 0.97861 1.20683 0.94787 0.96439 1.07078 1.19331 0.82177 0.95255 0.97502 1.86046 1.17039 1.33544 1.88801 1.22858 0.91153 0.83427 1.03282 1.21122 0.92492 0.97082 1.03038 1.21520 0.88177 0.98778 1.07123 1.21475 0.90844 0.83914 0.75860 1.90648 1.79221 1.26077 1.52586 1.48220 1.07333 1.07600 1.71218 1.21978 1.00179 0.81620 1.02739 1.18750 0.76396 0.95349 0.95997 1.21687 0.93086 1.50384 0.93066 0.92782 1.25911 0.96951 0.94462 1.02138 1.70049 1.03533 1.50112 1.33141 0.85446 0.77135 0.79081 0.79022 1.18254 1.20330 1.20426 1.21525 0.96045 0.97194 1.08250 1.21182 0.93058 0.98847 0.97356 0.90657 0.90723 0.90901 0.83550 0.85514 0.89960 0.89639 0.92306 0.92761 0.85905 0.85380 0.90978 0.91810 0.88153 0.95826 0.98711 0.92398 0.83697 0.83532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.01 71.24 0.71 -0.23 16 2 C -0.14 -2.01 5.88 -19.85 -0.12 -2.13 16 3 C -0.09 -1.44 9.69 22.25 0.22 -1.22 16 4 C -0.17 -3.63 9.99 22.36 0.22 -3.41 16 5 C 0.10 2.34 6.69 22.50 0.15 2.49 16 6 O -0.34 -8.85 10.14 -92.48 -0.94 -9.79 16 7 C 0.07 1.36 4.74 71.98 0.34 1.70 16 8 C -0.10 -2.69 4.87 30.59 0.15 -2.54 16 9 C -0.12 -2.90 4.25 29.85 0.13 -2.78 16 10 C 0.49 20.16 7.67 87.66 0.67 20.83 16 11 O -0.60 -32.10 15.56 -3.01 -0.05 -32.15 16 12 N -0.61 -25.80 2.86 -851.13 -2.43 -28.23 16 13 C 0.08 2.14 10.24 127.77 1.31 3.45 16 14 C 0.26 14.11 5.16 85.63 0.44 14.55 16 15 C -0.54 -31.82 9.39 25.60 0.24 -31.58 16 16 H 0.05 3.11 7.81 -2.91 -0.02 3.08 16 17 C 0.00 0.25 5.46 84.66 0.46 0.71 16 18 N -0.93 -57.08 13.29 21.45 0.28 -56.79 16 19 Si 0.97 45.46 29.54 68.60 2.03 47.48 16 20 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 22 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 23 C -0.21 -3.80 9.04 22.36 0.20 -3.60 16 24 C -0.09 -1.30 9.69 22.25 0.22 -1.09 16 25 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.07 0.51 8.08 -2.39 -0.02 0.49 16 27 H 0.07 0.53 8.08 -2.39 -0.02 0.51 16 28 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 29 H 0.13 2.61 8.06 -2.91 -0.02 2.58 16 30 H 0.08 1.32 7.67 -2.39 -0.02 1.31 16 31 H 0.09 1.32 7.65 -2.39 -0.02 1.30 16 32 H 0.06 1.83 8.10 -2.39 -0.02 1.81 16 33 H 0.05 1.76 8.10 -2.39 -0.02 1.74 16 34 H 0.12 2.32 7.40 -2.39 -0.02 2.30 16 35 H 0.13 2.24 8.11 -2.38 -0.02 2.22 16 36 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 37 H 0.06 1.92 8.07 -2.39 -0.02 1.90 16 38 H 0.10 1.94 6.44 -2.39 -0.02 1.92 16 39 H 0.02 1.31 8.07 -2.39 -0.02 1.29 16 40 H -0.01 -0.34 7.42 -2.38 -0.02 -0.35 16 41 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 42 H 0.15 1.98 6.30 -2.91 -0.02 1.96 16 43 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 Total: -1.00 -80.46 361.56 5.22 -75.24 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 0.98 Total: 9.08 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: 5.35 Total: -4.84 kcal Atomic # 7 Polarization: -82.88 SS G_CDS: -2.15 Total: -85.03 kcal Atomic # 8 Polarization: -40.95 SS G_CDS: -0.98 Total: -41.94 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -80.46 5.22 -75.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060617484.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.966 kcal (2) G-P(sol) polarization free energy of solvation -80.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds