Wall clock time and date at job start Tue Mar 31 2020 06:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38286 * 119.97227 * 2 1 4 4 C 1.38242 * 120.11356 * 180.02562 * 3 2 1 5 5 C 1.38165 * 120.05518 * 359.67557 * 4 3 2 6 6 C 1.38722 * 119.94050 * 0.57816 * 5 4 3 7 7 O 1.35900 * 120.05394 * 179.71904 * 6 5 4 8 8 C 1.42896 * 116.99932 * 359.72709 * 7 6 5 9 9 C 1.53004 * 109.47171 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47499 * 179.97438 * 9 8 7 11 11 O 1.21282 * 119.99614 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00126 * 179.97438 * 10 9 8 13 13 C 1.46505 * 119.99838 * 0.02562 * 12 10 9 14 14 C 1.46500 * 120.00007 * 180.02562 * 12 10 9 15 15 H 1.09001 * 109.47297 * 0.02562 * 14 12 10 16 16 C 1.53006 * 109.46998 * 240.00425 * 14 12 10 17 17 C 1.50698 * 109.46840 * 120.00599 * 14 12 10 18 18 H 1.07993 * 120.00472 * 0.02562 * 17 14 12 19 19 C 1.37882 * 119.99554 * 180.02562 * 17 14 12 20 20 N 1.31515 * 120.00420 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99716 * 179.97438 * 19 17 14 22 22 H 1.48497 * 109.47510 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.47309 * 119.99914 * 21 19 17 24 24 H 1.48498 * 109.47163 * 239.99790 * 21 19 17 25 25 C 1.38123 * 119.97257 * 179.97438 * 2 1 3 26 26 H 1.09006 * 109.46616 * 270.01875 * 1 2 3 27 27 H 1.08993 * 109.47308 * 30.01332 * 1 2 3 28 28 H 1.08997 * 109.47431 * 150.02472 * 1 2 3 29 29 H 1.07995 * 119.94500 * 0.02562 * 3 2 1 30 30 H 1.07996 * 119.97825 * 179.97438 * 4 3 2 31 31 H 1.07998 * 120.03285 * 180.29565 * 5 4 3 32 32 H 1.09001 * 109.47732 * 60.00299 * 8 7 6 33 33 H 1.09001 * 109.47664 * 299.99679 * 8 7 6 34 34 H 1.09002 * 109.47244 * 60.00058 * 9 8 7 35 35 H 1.08996 * 109.47110 * 300.00576 * 9 8 7 36 36 H 1.08999 * 109.46748 * 269.99069 * 13 12 10 37 37 H 1.08997 * 109.47257 * 29.99586 * 13 12 10 38 38 H 1.09002 * 109.46769 * 149.99443 * 13 12 10 39 39 H 1.09001 * 109.47002 * 179.97438 * 16 14 12 40 40 H 1.08993 * 109.46955 * 300.00226 * 16 14 12 41 41 H 1.09000 * 109.47050 * 60.00054 * 16 14 12 42 42 H 0.97001 * 120.00306 * 180.02562 * 20 19 17 43 43 H 1.08005 * 120.02546 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2013 -0.0005 5 6 4.2752 0.0072 0.0057 6 6 3.5845 -1.1959 0.0004 7 8 4.2658 -2.3718 0.0007 8 6 5.6927 -2.2949 0.0007 9 6 6.2796 -3.7078 0.0017 10 6 7.7844 -3.6268 0.0010 11 8 8.3334 -2.5454 0.0003 12 7 8.5201 -4.7560 0.0023 13 6 7.8569 -6.0624 0.0038 14 6 9.9830 -4.6772 0.0022 15 1 10.2905 -3.6315 0.0014 16 6 10.5310 -5.3714 -1.2464 17 6 10.5228 -5.3583 1.2333 18 1 9.8441 -5.8055 1.9445 19 6 11.8832 -5.4105 1.4518 20 7 12.7097 -4.8663 0.5855 21 14 12.5523 -6.2541 2.9782 22 1 11.4241 -6.7810 3.7874 23 1 13.4392 -7.3751 2.5757 24 1 13.3255 -5.2765 3.7854 25 6 2.1971 -1.1965 0.0005 26 1 -0.3633 0.0003 1.0277 27 1 -0.3633 0.8898 -0.5140 28 1 -0.3634 -0.8902 -0.5134 29 1 1.6565 2.1324 0.0004 30 1 4.1176 2.1381 -0.0010 31 1 5.3552 0.0103 0.0101 32 1 6.0279 -1.7620 0.8905 33 1 6.0279 -1.7625 -0.8895 34 1 5.9445 -4.2412 -0.8879 35 1 5.9444 -4.2398 0.8920 36 1 7.6926 -6.3852 1.0318 37 1 6.8988 -5.9840 -0.5100 38 1 8.4859 -6.7898 -0.5094 39 1 11.6194 -5.3123 -1.2467 40 1 10.2234 -6.4170 -1.2453 41 1 10.1405 -4.8787 -2.1369 42 1 13.6668 -4.9034 0.7391 43 1 1.6570 -2.1318 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063093921.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:01 Heat of formation + Delta-G solvation = -57.837753 kcal Electronic energy + Delta-G solvation = -22524.977546 eV Core-core repulsion = 19149.313552 eV Total energy + Delta-G solvation = -3375.663994 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.26080 -39.17339 -37.70049 -35.43301 -33.02620 -32.67180 -31.96428 -30.02591 -29.04255 -27.16384 -26.18353 -25.25483 -24.32344 -22.64685 -21.32026 -20.54572 -18.46010 -17.75797 -16.64280 -16.45419 -16.22805 -16.01904 -15.67459 -15.19783 -14.71380 -14.39940 -14.16929 -13.88300 -13.50966 -13.32908 -13.03680 -12.80506 -12.61922 -12.35422 -12.23128 -11.86044 -11.67810 -11.66615 -11.54811 -11.38913 -11.08918 -10.84289 -10.80072 -10.73969 -10.65073 -10.26833 -10.19913 -9.21364 -9.04707 -8.92242 -8.45895 -8.26090 -7.65170 -6.09987 -4.18008 1.19273 1.34646 2.99771 3.24159 3.27622 3.32789 3.36251 3.63648 4.04233 4.38311 4.65023 4.68564 4.90846 4.93976 5.05028 5.10295 5.17291 5.21190 5.25620 5.32094 5.34903 5.48909 5.56607 5.63321 5.74097 5.84668 5.87640 5.93581 6.05122 6.23769 6.27646 6.33789 6.44012 6.67903 6.73096 6.78567 7.01846 7.36308 7.38633 7.47689 7.68587 7.97899 8.15902 8.46683 8.78854 8.97133 9.48620 10.95389 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.032151 B = 0.002650 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.693495 B =10565.178570 C =10696.511148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.053 4.053 3 C -0.164 4.164 4 C -0.076 4.076 5 C -0.213 4.213 6 C 0.140 3.860 7 O -0.319 6.319 8 C 0.076 3.924 9 C -0.138 4.138 10 C 0.508 3.492 11 O -0.556 6.556 12 N -0.590 5.590 13 C 0.084 3.916 14 C 0.256 3.744 15 H 0.064 0.936 16 C -0.147 4.147 17 C -0.525 4.525 18 H 0.060 0.940 19 C 0.064 3.936 20 N -0.888 5.888 21 Si 0.899 3.101 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.157 4.157 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.120 0.880 30 H 0.124 0.876 31 H 0.132 0.868 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.031 0.969 41 H 0.011 0.989 42 H 0.263 0.737 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.753 5.628 -2.514 21.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.053 4.053 3 C -0.183 4.183 4 C -0.094 4.094 5 C -0.232 4.232 6 C 0.095 3.905 7 O -0.232 6.232 8 C 0.001 3.999 9 C -0.179 4.179 10 C 0.295 3.705 11 O -0.436 6.436 12 N -0.321 5.321 13 C -0.060 4.060 14 C 0.156 3.844 15 H 0.082 0.918 16 C -0.206 4.206 17 C -0.564 4.564 18 H 0.078 0.922 19 C -0.139 4.139 20 N -0.526 5.526 21 Si 0.727 3.273 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.176 4.176 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.138 0.862 30 H 0.142 0.858 31 H 0.150 0.850 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.113 0.887 40 H 0.050 0.950 41 H 0.031 0.969 42 H 0.073 0.927 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -20.294 5.986 -2.547 21.311 hybrid contribution 0.708 -0.491 0.856 1.214 sum -19.587 5.494 -1.692 20.413 Atomic orbital electron populations 1.20792 0.90888 1.02850 1.02461 1.19676 0.95921 0.92334 0.97360 1.20907 0.94162 0.97429 1.05762 1.20950 0.94117 0.97505 0.96841 1.21414 1.00929 0.92251 1.08565 1.18992 0.91652 0.84807 0.95094 1.85970 1.20800 1.28187 1.88268 1.22502 0.76498 0.97853 1.03039 1.21530 0.94038 0.97084 1.05214 1.20017 0.88103 0.84815 0.77602 1.90663 1.73495 1.27817 1.51604 1.48225 1.09340 1.04516 1.70005 1.21607 0.96632 0.86448 1.01286 1.18983 0.72142 0.99072 0.94173 0.91820 1.22098 1.04731 0.97994 0.95754 1.21347 0.91848 1.36868 1.06299 0.92208 1.24905 0.96799 0.95392 0.96771 1.69887 1.03080 1.44363 1.35271 0.86428 0.78928 0.79161 0.82798 1.19815 1.20916 1.20905 1.20271 0.90881 0.98555 1.07886 0.90990 0.91411 0.91393 0.86152 0.85792 0.84968 0.90986 0.91069 0.88412 0.88312 0.93102 0.92735 0.90728 0.88737 0.95037 0.96944 0.92712 0.85350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.01 36.01 0.36 -0.42 16 2 C -0.05 -0.53 5.88 -104.65 -0.62 -1.14 16 3 C -0.16 -1.62 9.70 -39.56 -0.38 -2.01 16 4 C -0.08 -0.82 10.04 -39.61 -0.40 -1.22 16 5 C -0.21 -2.68 9.04 -39.43 -0.36 -3.04 16 6 C 0.14 1.86 6.69 -39.21 -0.26 1.60 16 7 O -0.32 -4.47 10.14 -19.43 -0.20 -4.67 16 8 C 0.08 1.11 4.03 37.16 0.15 1.26 16 9 C -0.14 -2.03 4.62 -27.88 -0.13 -2.16 16 10 C 0.51 10.20 7.67 -10.99 -0.08 10.11 16 11 O -0.56 -13.27 15.31 5.56 0.09 -13.19 16 12 N -0.59 -12.36 2.75 -175.25 -0.48 -12.84 16 13 C 0.08 1.37 9.48 59.85 0.57 1.94 16 14 C 0.26 6.49 2.64 -69.08 -0.18 6.31 16 15 H 0.06 1.87 6.90 -51.93 -0.36 1.51 16 16 C -0.15 -3.49 8.95 37.16 0.33 -3.15 16 17 C -0.52 -14.11 8.37 -34.44 -0.29 -14.40 16 18 H 0.06 1.59 7.64 -52.49 -0.40 1.19 16 19 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 20 N -0.89 -25.02 11.32 55.43 0.63 -24.39 16 21 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 C -0.16 -1.81 9.64 -39.44 -0.38 -2.19 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 28 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 29 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 30 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 31 H 0.13 1.67 6.30 -52.49 -0.33 1.34 16 32 H 0.07 1.09 7.61 -51.93 -0.40 0.69 16 33 H 0.07 1.05 7.63 -51.93 -0.40 0.65 16 34 H 0.10 1.24 7.40 -51.93 -0.38 0.85 16 35 H 0.10 1.31 8.11 -51.93 -0.42 0.89 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.69 6.44 -51.93 -0.33 0.35 16 38 H 0.07 1.23 6.43 -51.93 -0.33 0.90 16 39 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 40 H 0.03 0.68 6.66 -51.93 -0.35 0.34 16 41 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 43 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 LS Contribution 352.71 15.07 5.32 5.32 Total: -1.00 -31.19 352.71 -7.96 -39.15 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -6.53 Total: 1.53 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -1.76 Total: -6.88 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.15 Total: -37.23 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.11 Total: -17.85 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.19 -7.96 -39.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093921.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.686 kcal (2) G-P(sol) polarization free energy of solvation -31.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds