Wall clock time and date at job start Tue Mar 31 2020 06:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38286 * 119.97227 * 2 1 4 4 C 1.38242 * 120.11356 * 180.02562 * 3 2 1 5 5 C 1.38165 * 120.05518 * 359.67557 * 4 3 2 6 6 C 1.38722 * 119.94050 * 0.57816 * 5 4 3 7 7 O 1.35900 * 120.05394 * 179.71904 * 6 5 4 8 8 C 1.42896 * 116.99932 * 359.72709 * 7 6 5 9 9 C 1.53004 * 109.47171 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47499 * 179.97438 * 9 8 7 11 11 O 1.21282 * 119.99614 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00126 * 179.97438 * 10 9 8 13 13 C 1.46505 * 119.99838 * 0.02562 * 12 10 9 14 14 C 1.46500 * 120.00007 * 180.02562 * 12 10 9 15 15 H 1.09001 * 109.47297 * 0.02562 * 14 12 10 16 16 C 1.53006 * 109.46998 * 240.00425 * 14 12 10 17 17 C 1.50698 * 109.46840 * 120.00599 * 14 12 10 18 18 H 1.07993 * 120.00472 * 0.02562 * 17 14 12 19 19 C 1.37882 * 119.99554 * 180.02562 * 17 14 12 20 20 N 1.31515 * 120.00420 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99716 * 179.97438 * 19 17 14 22 22 H 1.48497 * 109.47510 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.47309 * 119.99914 * 21 19 17 24 24 H 1.48498 * 109.47163 * 239.99790 * 21 19 17 25 25 C 1.38123 * 119.97257 * 179.97438 * 2 1 3 26 26 H 1.09006 * 109.46616 * 270.01875 * 1 2 3 27 27 H 1.08993 * 109.47308 * 30.01332 * 1 2 3 28 28 H 1.08997 * 109.47431 * 150.02472 * 1 2 3 29 29 H 1.07995 * 119.94500 * 0.02562 * 3 2 1 30 30 H 1.07996 * 119.97825 * 179.97438 * 4 3 2 31 31 H 1.07998 * 120.03285 * 180.29565 * 5 4 3 32 32 H 1.09001 * 109.47732 * 60.00299 * 8 7 6 33 33 H 1.09001 * 109.47664 * 299.99679 * 8 7 6 34 34 H 1.09002 * 109.47244 * 60.00058 * 9 8 7 35 35 H 1.08996 * 109.47110 * 300.00576 * 9 8 7 36 36 H 1.08999 * 109.46748 * 269.99069 * 13 12 10 37 37 H 1.08997 * 109.47257 * 29.99586 * 13 12 10 38 38 H 1.09002 * 109.46769 * 149.99443 * 13 12 10 39 39 H 1.09001 * 109.47002 * 179.97438 * 16 14 12 40 40 H 1.08993 * 109.46955 * 300.00226 * 16 14 12 41 41 H 1.09000 * 109.47050 * 60.00054 * 16 14 12 42 42 H 0.97001 * 120.00306 * 180.02562 * 20 19 17 43 43 H 1.08005 * 120.02546 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2013 -0.0005 5 6 4.2752 0.0072 0.0057 6 6 3.5845 -1.1959 0.0004 7 8 4.2658 -2.3718 0.0007 8 6 5.6927 -2.2949 0.0007 9 6 6.2796 -3.7078 0.0017 10 6 7.7844 -3.6268 0.0010 11 8 8.3334 -2.5454 0.0003 12 7 8.5201 -4.7560 0.0023 13 6 7.8569 -6.0624 0.0038 14 6 9.9830 -4.6772 0.0022 15 1 10.2905 -3.6315 0.0014 16 6 10.5310 -5.3714 -1.2464 17 6 10.5228 -5.3583 1.2333 18 1 9.8441 -5.8055 1.9445 19 6 11.8832 -5.4105 1.4518 20 7 12.7097 -4.8663 0.5855 21 14 12.5523 -6.2541 2.9782 22 1 11.4241 -6.7810 3.7874 23 1 13.4392 -7.3751 2.5757 24 1 13.3255 -5.2765 3.7854 25 6 2.1971 -1.1965 0.0005 26 1 -0.3633 0.0003 1.0277 27 1 -0.3633 0.8898 -0.5140 28 1 -0.3634 -0.8902 -0.5134 29 1 1.6565 2.1324 0.0004 30 1 4.1176 2.1381 -0.0010 31 1 5.3552 0.0103 0.0101 32 1 6.0279 -1.7620 0.8905 33 1 6.0279 -1.7625 -0.8895 34 1 5.9445 -4.2412 -0.8879 35 1 5.9444 -4.2398 0.8920 36 1 7.6926 -6.3852 1.0318 37 1 6.8988 -5.9840 -0.5100 38 1 8.4859 -6.7898 -0.5094 39 1 11.6194 -5.3123 -1.2467 40 1 10.2234 -6.4170 -1.2453 41 1 10.1405 -4.8787 -2.1369 42 1 13.6668 -4.9034 0.7391 43 1 1.6570 -2.1318 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063093921.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:00 Heat of formation + Delta-G solvation = -75.422752 kcal Electronic energy + Delta-G solvation = -22525.740089 eV Core-core repulsion = 19149.313552 eV Total energy + Delta-G solvation = -3376.426537 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.29214 -40.67363 -38.66371 -37.20503 -34.88244 -33.49737 -33.24612 -31.40399 -30.42842 -27.88710 -27.62690 -27.29832 -25.59786 -23.50850 -22.80114 -21.72232 -19.96856 -18.91266 -18.47197 -17.87506 -17.45656 -17.08841 -16.83060 -16.77274 -16.13442 -16.01280 -15.15695 -14.75855 -14.59065 -14.51171 -14.30903 -14.14184 -14.08793 -13.56334 -13.47190 -13.15951 -12.97595 -12.92349 -12.74471 -12.64483 -12.56534 -12.51859 -12.43609 -12.19509 -12.12146 -11.73114 -11.72510 -11.18346 -10.75993 -10.51716 -9.74525 -9.36855 -9.17122 -8.16178 -6.32644 0.34942 0.47567 1.39738 1.41557 1.52634 1.71917 1.83870 2.38050 2.64804 2.78614 3.11890 3.60200 3.83785 3.88973 3.89622 4.01113 4.15916 4.30051 4.35389 4.42599 4.52546 4.54806 4.64359 4.71692 4.74371 4.81060 4.86973 4.88079 4.88787 5.03777 5.04720 5.07283 5.25798 5.37384 5.44982 5.50280 5.60106 5.64706 5.65587 5.85700 6.01253 6.14666 6.38318 6.75377 6.77845 7.27363 7.43549 8.88376 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.032151 B = 0.002650 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.693495 B =10565.178570 C =10696.511148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.053 4.053 3 C -0.163 4.163 4 C -0.084 4.084 5 C -0.233 4.233 6 C 0.113 3.887 7 O -0.321 6.321 8 C 0.085 3.915 9 C -0.121 4.121 10 C 0.499 3.501 11 O -0.605 6.605 12 N -0.598 5.598 13 C 0.079 3.921 14 C 0.259 3.741 15 H 0.010 0.990 16 C -0.133 4.133 17 C -0.537 4.537 18 H 0.061 0.939 19 C 0.013 3.987 20 N -0.918 5.918 21 Si 0.965 3.035 22 H -0.265 1.265 23 H -0.274 1.274 24 H -0.286 1.286 25 C -0.166 4.166 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.148 0.852 30 H 0.141 0.859 31 H 0.120 0.880 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.129 0.871 35 H 0.121 0.879 36 H 0.057 0.943 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.049 0.951 41 H 0.021 0.979 42 H 0.264 0.736 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.573 4.758 -2.103 24.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.054 4.054 3 C -0.181 4.181 4 C -0.102 4.102 5 C -0.252 4.252 6 C 0.068 3.932 7 O -0.235 6.235 8 C 0.009 3.991 9 C -0.161 4.161 10 C 0.288 3.712 11 O -0.488 6.488 12 N -0.328 5.328 13 C -0.063 4.063 14 C 0.157 3.843 15 H 0.028 0.972 16 C -0.192 4.192 17 C -0.575 4.575 18 H 0.079 0.921 19 C -0.186 4.186 20 N -0.557 5.557 21 Si 0.791 3.209 22 H -0.189 1.189 23 H -0.199 1.199 24 H -0.212 1.212 25 C -0.184 4.184 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.166 0.834 30 H 0.159 0.841 31 H 0.138 0.862 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.146 0.854 35 H 0.139 0.861 36 H 0.076 0.924 37 H 0.117 0.883 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.040 0.960 42 H 0.074 0.926 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -23.158 5.087 -2.142 23.806 hybrid contribution 1.505 -0.120 0.708 1.667 sum -21.653 4.967 -1.434 22.262 Atomic orbital electron populations 1.20865 0.88385 1.04067 1.03496 1.20112 0.97735 0.91734 0.95770 1.21293 0.93829 0.98704 1.04303 1.21238 0.94979 0.97521 0.96422 1.21475 1.00604 0.93169 1.09974 1.19297 0.92484 0.84610 0.96842 1.85921 1.19949 1.28825 1.88793 1.22268 0.77248 0.97609 1.01956 1.21408 0.89374 0.97642 1.07638 1.20927 0.90346 0.83732 0.76175 1.90639 1.74959 1.29677 1.53567 1.48227 1.07873 1.06761 1.69974 1.21887 0.98132 0.83862 1.02406 1.18576 0.75278 0.95838 0.94617 0.97245 1.21884 1.02873 0.99006 0.95420 1.21600 0.92217 1.36811 1.06896 0.92100 1.25752 0.97175 0.96037 0.99661 1.70028 1.03321 1.45370 1.36961 0.85397 0.78351 0.78099 0.79099 1.18901 1.19948 1.21214 1.20541 0.90187 0.99867 1.07849 0.89886 0.89860 0.90599 0.83416 0.84090 0.86197 0.92500 0.92068 0.85354 0.86064 0.92423 0.88320 0.90976 0.91409 0.93163 0.96010 0.92640 0.84224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 10.01 71.24 0.71 -0.46 16 2 C -0.05 -0.95 5.88 -19.88 -0.12 -1.06 16 3 C -0.16 -2.87 9.70 22.28 0.22 -2.65 16 4 C -0.08 -1.74 10.04 22.25 0.22 -1.52 16 5 C -0.23 -6.02 9.04 22.37 0.20 -5.82 16 6 C 0.11 2.97 6.69 22.51 0.15 3.12 16 7 O -0.32 -8.84 10.14 -92.42 -0.94 -9.78 16 8 C 0.08 2.48 4.03 71.98 0.29 2.77 16 9 C -0.12 -3.37 4.62 29.85 0.14 -3.23 16 10 C 0.50 20.18 7.67 87.66 0.67 20.85 16 11 O -0.61 -30.32 15.31 -3.04 -0.05 -30.37 16 12 N -0.60 -24.92 2.75 -826.77 -2.28 -27.20 16 13 C 0.08 2.39 9.48 127.77 1.21 3.60 16 14 C 0.26 13.48 2.64 44.25 0.12 13.60 16 15 H 0.01 0.60 6.90 -2.39 -0.02 0.58 16 16 C -0.13 -6.40 8.95 71.98 0.64 -5.76 16 17 C -0.54 -29.19 8.37 25.60 0.21 -28.97 16 18 H 0.06 3.22 7.64 -2.91 -0.02 3.19 16 19 C 0.01 0.73 5.30 84.66 0.45 1.17 16 20 N -0.92 -53.06 11.32 21.45 0.24 -52.82 16 21 Si 0.97 43.15 29.54 68.60 2.03 45.17 16 22 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 24 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 25 C -0.17 -3.60 9.64 22.36 0.22 -3.39 16 26 H 0.08 0.73 8.14 -2.38 -0.02 0.72 16 27 H 0.08 0.64 8.08 -2.39 -0.02 0.62 16 28 H 0.08 0.70 8.08 -2.39 -0.02 0.68 16 29 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 30 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 31 H 0.12 3.27 6.30 -2.91 -0.02 3.25 16 32 H 0.06 1.81 7.61 -2.39 -0.02 1.79 16 33 H 0.06 1.89 7.63 -2.39 -0.02 1.87 16 34 H 0.13 2.82 7.40 -2.39 -0.02 2.80 16 35 H 0.12 2.89 8.11 -2.39 -0.02 2.87 16 36 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.10 2.10 6.44 -2.39 -0.02 2.08 16 38 H 0.07 2.21 6.43 -2.39 -0.02 2.20 16 39 H 0.07 3.63 6.07 -2.39 -0.01 3.62 16 40 H 0.05 2.17 6.66 -2.39 -0.02 2.15 16 41 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 43 H 0.14 2.60 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -70.68 352.71 5.34 -65.34 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 0.99 Total: 17.39 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: 5.34 Total: -7.74 kcal Atomic # 7 Polarization: -77.98 SS G_CDS: -2.03 Total: -80.01 kcal Atomic # 8 Polarization: -39.17 SS G_CDS: -0.98 Total: -40.15 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -70.68 5.34 -65.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093921.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.081 kcal (2) G-P(sol) polarization free energy of solvation -70.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds