Wall clock time and date at job start Tue Mar 31 2020 06:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38145 * 120.02795 * 2 1 4 4 C 1.38271 * 120.05259 * 180.30729 * 3 2 1 5 5 C 1.38258 * 120.11553 * 359.67500 * 4 3 2 6 6 C 1.38150 * 120.05288 * 0.02715 * 5 4 3 7 7 C 1.50697 * 120.02589 * 179.97438 * 6 5 4 8 8 C 1.38729 * 120.02927 * 179.70946 * 2 1 3 9 9 O 1.35901 * 120.05796 * 359.97438 * 8 2 1 10 10 C 1.42905 * 116.99937 * 269.73142 * 9 8 2 11 11 C 1.53001 * 109.46871 * 179.97438 * 10 9 8 12 12 C 1.50709 * 109.46716 * 179.97438 * 11 10 9 13 13 O 1.21283 * 119.99688 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99796 * 180.02562 * 12 11 10 15 15 C 1.46497 * 119.99943 * 180.02562 * 14 12 11 16 16 H 1.09007 * 109.47078 * 34.99474 * 15 14 12 17 17 C 1.53000 * 109.47021 * 275.00054 * 15 14 12 18 18 C 1.50694 * 109.47115 * 154.99835 * 15 14 12 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 15 14 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 15 14 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 15 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 H 1.08997 * 109.47268 * 270.29165 * 1 2 3 27 27 H 1.09001 * 109.47605 * 30.29251 * 1 2 3 28 28 H 1.09002 * 109.47254 * 150.29442 * 1 2 3 29 29 H 1.07998 * 119.97153 * 359.97438 * 3 2 1 30 30 H 1.08002 * 119.94135 * 179.70711 * 4 3 2 31 31 H 1.08004 * 119.97817 * 180.02562 * 5 4 3 32 32 H 1.09001 * 109.47441 * 270.01817 * 7 6 5 33 33 H 1.09006 * 109.47639 * 30.02295 * 7 6 5 34 34 H 1.09007 * 109.47082 * 150.02054 * 7 6 5 35 35 H 1.09000 * 109.47222 * 59.99303 * 10 9 8 36 36 H 1.09000 * 109.46816 * 299.99217 * 10 9 8 37 37 H 1.08998 * 109.46869 * 60.00269 * 11 10 9 38 38 H 1.08995 * 109.47564 * 299.99869 * 11 10 9 39 39 H 0.96997 * 119.99849 * 0.02562 * 14 12 11 40 40 H 1.09002 * 109.47106 * 299.99878 * 17 15 14 41 41 H 1.08998 * 109.47089 * 59.99825 * 17 15 14 42 42 H 1.08995 * 109.47131 * 179.97438 * 17 15 14 43 43 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1960 0.0000 4 6 3.5810 1.1966 -0.0064 5 6 4.2752 0.0010 -0.0061 6 6 3.5885 -1.1977 0.0001 7 6 4.3458 -2.5006 -0.0001 8 6 2.2012 -1.2011 0.0061 9 8 1.5235 -2.3790 0.0126 10 6 1.2056 -2.9376 1.2890 11 6 0.4478 -4.2526 1.0957 12 6 0.1131 -4.8419 2.4418 13 8 0.4475 -4.2665 3.4557 14 7 -0.5576 -6.0084 2.5188 15 6 -0.8834 -6.5810 3.8273 16 1 -1.0994 -5.7778 4.5318 17 6 0.3049 -7.3996 4.3359 18 6 -2.0903 -7.4742 3.6983 19 1 -2.5673 -7.6022 2.7378 20 6 -2.5863 -8.1272 4.8068 21 7 -2.0058 -7.9710 5.9765 22 14 -4.0828 -9.2338 4.6470 23 1 -5.3147 -8.4362 4.8736 24 1 -4.1188 -9.8241 3.2848 25 1 -4.0044 -10.3209 5.6556 26 1 -0.3633 0.0052 1.0276 27 1 -0.3634 0.8873 -0.5184 28 1 -0.3634 -0.8926 -0.5093 29 1 1.6583 2.1313 -0.0004 30 1 4.1196 2.1327 -0.0112 31 1 5.3552 0.0041 -0.0107 32 1 4.5240 -2.8172 -1.0278 33 1 5.3001 -2.3664 0.5094 34 1 3.7611 -3.2608 0.5181 35 1 0.5829 -2.2382 1.8468 36 1 2.1256 -3.1260 1.8424 37 1 1.0703 -4.9521 0.5379 38 1 -0.4722 -4.0639 0.5425 39 1 -0.8247 -6.4687 1.7078 40 1 0.5209 -8.2028 3.6314 41 1 1.1778 -6.7536 4.4291 42 1 0.0627 -7.8253 5.3096 43 1 -2.3550 -8.4301 6.7564 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064318087.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:29 Heat of formation + Delta-G solvation = -72.732203 kcal Electronic energy + Delta-G solvation = -22686.697758 eV Core-core repulsion = 19310.387892 eV Total energy + Delta-G solvation = -3376.309866 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.34777 -38.97085 -37.34672 -34.86185 -33.73106 -32.48578 -31.98585 -30.80942 -28.79785 -27.09523 -26.78677 -25.28174 -23.93721 -21.86516 -21.03339 -20.87132 -19.41550 -17.98983 -16.85285 -16.69636 -15.92333 -15.44091 -15.21095 -15.17561 -14.90080 -14.25735 -14.00059 -13.69504 -13.46180 -13.25235 -13.13475 -12.91014 -12.80842 -12.43540 -12.08714 -12.02583 -11.83552 -11.64877 -11.63801 -11.18593 -11.12556 -11.03871 -10.97375 -10.74024 -10.32533 -10.25219 -9.80441 -9.11881 -9.06482 -8.75029 -8.61552 -8.56753 -7.94963 -6.14101 -4.23521 1.05272 1.16462 3.18898 3.23551 3.30211 3.31756 3.34465 3.72152 4.24804 4.45239 4.61366 4.66024 4.78794 5.03603 5.07787 5.12413 5.18338 5.22820 5.33008 5.40581 5.48292 5.51409 5.55183 5.60701 5.65670 5.77485 5.84965 5.90922 6.02803 6.12397 6.28268 6.29878 6.43613 6.65211 6.80511 6.94368 7.12983 7.42699 7.51262 7.54177 7.67398 7.89161 8.13002 8.62692 8.75309 9.08061 9.44063 10.91926 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.032091 B = 0.002755 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.309684 B =10162.662387 C =10541.337662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.098 4.098 3 C -0.117 4.117 4 C -0.121 4.121 5 C -0.117 4.117 6 C -0.099 4.099 7 C -0.112 4.112 8 C 0.100 3.900 9 O -0.337 6.337 10 C 0.085 3.915 11 C -0.141 4.141 12 C 0.505 3.495 13 O -0.558 6.558 14 N -0.707 5.707 15 C 0.264 3.736 16 H 0.049 0.951 17 C -0.147 4.147 18 C -0.534 4.534 19 H 0.062 0.938 20 C 0.066 3.934 21 N -0.884 5.884 22 Si 0.902 3.098 23 H -0.279 1.279 24 H -0.273 1.273 25 H -0.285 1.285 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.390 0.610 40 H 0.027 0.973 41 H 0.014 0.986 42 H 0.090 0.910 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.552 14.203 -13.770 21.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.099 4.099 3 C -0.135 4.135 4 C -0.139 4.139 5 C -0.135 4.135 6 C -0.099 4.099 7 C -0.169 4.169 8 C 0.056 3.944 9 O -0.254 6.254 10 C 0.011 3.989 11 C -0.181 4.181 12 C 0.290 3.710 13 O -0.438 6.438 14 N -0.354 5.354 15 C 0.162 3.838 16 H 0.066 0.934 17 C -0.206 4.206 18 C -0.573 4.573 19 H 0.080 0.920 20 C -0.138 4.138 21 N -0.521 5.521 22 Si 0.730 3.270 23 H -0.205 1.205 24 H -0.198 1.198 25 H -0.211 1.211 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.142 0.858 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.223 0.777 40 H 0.046 0.954 41 H 0.033 0.967 42 H 0.109 0.891 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.690 14.401 -12.961 21.663 hybrid contribution -0.853 -0.737 -0.260 1.157 sum 8.838 13.665 -13.222 20.967 Atomic orbital electron populations 1.20733 0.90598 1.03153 1.02656 1.20255 0.96886 0.92483 1.00247 1.20924 0.94191 0.97084 1.01295 1.21114 0.94243 0.97991 1.00574 1.20917 0.99757 0.91504 1.01319 1.20254 0.93068 0.96282 1.00329 1.20726 0.99456 0.94140 1.02572 1.18311 0.89353 0.85142 1.01587 1.85902 1.74719 1.34860 1.29927 1.22371 0.99538 0.94070 0.82909 1.21521 1.02429 0.96748 0.97391 1.20143 0.79000 0.81928 0.89967 1.90673 1.54314 1.61462 1.37335 1.46512 1.55261 1.21827 1.11820 1.18756 0.92899 0.93059 0.79073 0.93365 1.22078 0.96549 0.98583 1.03368 1.21222 1.12317 1.28302 0.95443 0.92031 1.24899 0.97273 0.96526 0.95053 1.69905 1.40057 1.42740 0.99401 0.86436 0.82580 0.80074 0.77934 1.20550 1.19827 1.21055 0.91055 0.91530 0.90668 0.85793 0.85930 0.85798 0.90933 0.91585 0.91058 0.91994 0.92013 0.88542 0.88458 0.77742 0.95426 0.96668 0.89126 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 9.79 36.00 0.35 -0.83 16 2 C -0.10 -1.16 5.89 -104.48 -0.62 -1.77 16 3 C -0.12 -1.17 9.70 -39.60 -0.38 -1.56 16 4 C -0.12 -1.13 10.04 -39.56 -0.40 -1.53 16 5 C -0.12 -1.17 9.70 -39.61 -0.38 -1.55 16 6 C -0.10 -1.16 5.89 -104.47 -0.62 -1.77 16 7 C -0.11 -1.15 9.79 36.00 0.35 -0.80 16 8 C 0.10 1.30 5.67 -39.22 -0.22 1.07 16 9 O -0.34 -4.58 8.32 -19.43 -0.16 -4.75 16 10 C 0.09 1.23 4.98 37.16 0.19 1.42 16 11 C -0.14 -1.99 6.07 -27.88 -0.17 -2.16 16 12 C 0.51 9.82 7.79 -10.98 -0.09 9.73 16 13 O -0.56 -13.10 15.65 5.56 0.09 -13.02 16 14 N -0.71 -14.47 5.07 -54.93 -0.28 -14.75 16 15 C 0.26 6.69 2.56 -69.09 -0.18 6.51 16 16 H 0.05 1.41 7.58 -51.92 -0.39 1.02 16 17 C -0.15 -3.66 9.26 37.16 0.34 -3.31 16 18 C -0.53 -14.10 8.73 -34.44 -0.30 -14.40 16 19 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 20 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 21 N -0.88 -24.87 11.32 55.43 0.63 -24.24 16 22 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 28 H 0.07 0.82 7.53 -51.93 -0.39 0.43 16 29 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 30 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 31 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 34 H 0.07 0.81 6.33 -51.93 -0.33 0.48 16 35 H 0.06 0.95 8.10 -51.93 -0.42 0.53 16 36 H 0.06 0.94 7.22 -51.93 -0.37 0.56 16 37 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.39 6.84 8.54 -40.82 -0.35 6.49 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 43 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 358.99 15.07 5.41 5.41 Total: -1.00 -30.97 358.99 -8.31 -39.28 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -6.76 Total: 5.82 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -2.21 Total: -9.29 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.35 Total: -38.99 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.07 Total: -17.76 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.97 -8.31 -39.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318087.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.456 kcal (2) G-P(sol) polarization free energy of solvation -30.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds