Wall clock time and date at job start Tue Mar 31 2020 06:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38145 * 120.02795 * 2 1 4 4 C 1.38271 * 120.05259 * 180.30729 * 3 2 1 5 5 C 1.38258 * 120.11553 * 359.67500 * 4 3 2 6 6 C 1.38150 * 120.05288 * 0.02715 * 5 4 3 7 7 C 1.50697 * 120.02589 * 179.97438 * 6 5 4 8 8 C 1.38729 * 120.02927 * 179.70946 * 2 1 3 9 9 O 1.35901 * 120.05796 * 359.97438 * 8 2 1 10 10 C 1.42905 * 116.99937 * 269.73142 * 9 8 2 11 11 C 1.53001 * 109.46871 * 179.97438 * 10 9 8 12 12 C 1.50709 * 109.46716 * 179.97438 * 11 10 9 13 13 O 1.21283 * 119.99688 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99796 * 180.02562 * 12 11 10 15 15 C 1.46497 * 119.99943 * 180.02562 * 14 12 11 16 16 H 1.09007 * 109.47078 * 34.99474 * 15 14 12 17 17 C 1.53000 * 109.47021 * 275.00054 * 15 14 12 18 18 C 1.50694 * 109.47115 * 154.99835 * 15 14 12 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 15 14 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 15 14 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 15 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 H 1.08997 * 109.47268 * 270.29165 * 1 2 3 27 27 H 1.09001 * 109.47605 * 30.29251 * 1 2 3 28 28 H 1.09002 * 109.47254 * 150.29442 * 1 2 3 29 29 H 1.07998 * 119.97153 * 359.97438 * 3 2 1 30 30 H 1.08002 * 119.94135 * 179.70711 * 4 3 2 31 31 H 1.08004 * 119.97817 * 180.02562 * 5 4 3 32 32 H 1.09001 * 109.47441 * 270.01817 * 7 6 5 33 33 H 1.09006 * 109.47639 * 30.02295 * 7 6 5 34 34 H 1.09007 * 109.47082 * 150.02054 * 7 6 5 35 35 H 1.09000 * 109.47222 * 59.99303 * 10 9 8 36 36 H 1.09000 * 109.46816 * 299.99217 * 10 9 8 37 37 H 1.08998 * 109.46869 * 60.00269 * 11 10 9 38 38 H 1.08995 * 109.47564 * 299.99869 * 11 10 9 39 39 H 0.96997 * 119.99849 * 0.02562 * 14 12 11 40 40 H 1.09002 * 109.47106 * 299.99878 * 17 15 14 41 41 H 1.08998 * 109.47089 * 59.99825 * 17 15 14 42 42 H 1.08995 * 109.47131 * 179.97438 * 17 15 14 43 43 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1960 0.0000 4 6 3.5810 1.1966 -0.0064 5 6 4.2752 0.0010 -0.0061 6 6 3.5885 -1.1977 0.0001 7 6 4.3458 -2.5006 -0.0001 8 6 2.2012 -1.2011 0.0061 9 8 1.5235 -2.3790 0.0126 10 6 1.2056 -2.9376 1.2890 11 6 0.4478 -4.2526 1.0957 12 6 0.1131 -4.8419 2.4418 13 8 0.4475 -4.2665 3.4557 14 7 -0.5576 -6.0084 2.5188 15 6 -0.8834 -6.5810 3.8273 16 1 -1.0994 -5.7778 4.5318 17 6 0.3049 -7.3996 4.3359 18 6 -2.0903 -7.4742 3.6983 19 1 -2.5673 -7.6022 2.7378 20 6 -2.5863 -8.1272 4.8068 21 7 -2.0058 -7.9710 5.9765 22 14 -4.0828 -9.2338 4.6470 23 1 -5.3147 -8.4362 4.8736 24 1 -4.1188 -9.8241 3.2848 25 1 -4.0044 -10.3209 5.6556 26 1 -0.3633 0.0052 1.0276 27 1 -0.3634 0.8873 -0.5184 28 1 -0.3634 -0.8926 -0.5093 29 1 1.6583 2.1313 -0.0004 30 1 4.1196 2.1327 -0.0112 31 1 5.3552 0.0041 -0.0107 32 1 4.5240 -2.8172 -1.0278 33 1 5.3001 -2.3664 0.5094 34 1 3.7611 -3.2608 0.5181 35 1 0.5829 -2.2382 1.8468 36 1 2.1256 -3.1260 1.8424 37 1 1.0703 -4.9521 0.5379 38 1 -0.4722 -4.0639 0.5425 39 1 -0.8247 -6.4687 1.7078 40 1 0.5209 -8.2028 3.6314 41 1 1.1778 -6.7536 4.4291 42 1 0.0627 -7.8253 5.3096 43 1 -2.3550 -8.4301 6.7564 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064318087.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:29 Heat of formation + Delta-G solvation = -90.835367 kcal Electronic energy + Delta-G solvation = -22687.482770 eV Core-core repulsion = 19310.387892 eV Total energy + Delta-G solvation = -3377.094878 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.27109 -40.55548 -38.32240 -36.75564 -34.52635 -34.35750 -33.22420 -31.80410 -30.58789 -27.99172 -27.55185 -27.34937 -25.25610 -22.84037 -22.54589 -21.84015 -21.13642 -19.19054 -18.47031 -17.67408 -17.38585 -17.14010 -16.42633 -16.28426 -16.16106 -15.75282 -15.07666 -14.94534 -14.60083 -14.41018 -14.33768 -14.06366 -13.88269 -13.72334 -13.58480 -13.12999 -13.01651 -12.86727 -12.85093 -12.76727 -12.69239 -12.44537 -12.27053 -12.13600 -12.08399 -11.96391 -11.12160 -10.82689 -10.81600 -10.59054 -9.77672 -9.53976 -9.47179 -8.18287 -6.35854 0.20363 0.36946 1.45291 1.45558 1.56468 1.76591 2.11491 2.40614 2.71446 3.09793 3.13379 3.76666 3.82189 3.87976 3.98196 4.09179 4.18654 4.37816 4.38719 4.47447 4.59721 4.61065 4.72799 4.75234 4.76177 4.78438 4.79209 4.87359 4.91437 4.91725 5.08880 5.19630 5.32012 5.42650 5.51247 5.51510 5.60044 5.61525 5.67971 5.86381 5.89197 6.09103 6.54327 6.72184 6.92694 7.31479 7.52541 8.88133 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.032091 B = 0.002755 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.309684 B =10162.662387 C =10541.337662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.115 4.115 3 C -0.123 4.123 4 C -0.118 4.118 5 C -0.122 4.122 6 C -0.114 4.114 7 C -0.111 4.111 8 C 0.064 3.936 9 O -0.335 6.335 10 C 0.094 3.906 11 C -0.123 4.123 12 C 0.503 3.497 13 O -0.603 6.603 14 N -0.702 5.702 15 C 0.269 3.731 16 H -0.002 1.002 17 C -0.134 4.134 18 C -0.547 4.547 19 H 0.075 0.925 20 C 0.013 3.987 21 N -0.918 5.918 22 Si 0.973 3.027 23 H -0.278 1.278 24 H -0.259 1.259 25 H -0.284 1.284 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.147 0.853 30 H 0.153 0.847 31 H 0.148 0.852 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.046 0.954 36 H 0.048 0.952 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.408 0.592 40 H 0.042 0.958 41 H 0.012 0.988 42 H 0.066 0.934 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.664 14.708 -15.949 23.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.115 4.115 3 C -0.141 4.141 4 C -0.135 4.135 5 C -0.140 4.140 6 C -0.115 4.115 7 C -0.168 4.168 8 C 0.021 3.979 9 O -0.253 6.253 10 C 0.019 3.981 11 C -0.163 4.163 12 C 0.290 3.710 13 O -0.486 6.486 14 N -0.351 5.351 15 C 0.166 3.834 16 H 0.016 0.984 17 C -0.193 4.193 18 C -0.585 4.585 19 H 0.093 0.907 20 C -0.187 4.187 21 N -0.557 5.557 22 Si 0.798 3.202 23 H -0.204 1.204 24 H -0.183 1.183 25 H -0.210 1.210 26 H 0.083 0.917 27 H 0.105 0.895 28 H 0.084 0.916 29 H 0.165 0.835 30 H 0.171 0.829 31 H 0.165 0.835 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.243 0.757 40 H 0.061 0.939 41 H 0.031 0.969 42 H 0.085 0.915 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.807 14.908 -15.195 23.437 hybrid contribution -0.808 -0.768 0.418 1.190 sum 8.999 14.140 -14.778 22.345 Atomic orbital electron populations 1.20730 0.90099 1.03701 1.02404 1.20522 0.97599 0.92859 1.00529 1.21266 0.94850 0.97345 1.00601 1.21530 0.94194 0.99057 0.98745 1.21261 1.01062 0.91113 1.00591 1.20529 0.92894 0.97558 1.00506 1.20738 0.99710 0.93251 1.03078 1.18651 0.90175 0.85192 1.03911 1.85888 1.74990 1.35526 1.28855 1.22141 0.98594 0.93908 0.83469 1.21389 1.04042 0.96779 0.94067 1.20982 0.77495 0.81017 0.91477 1.90655 1.55814 1.62468 1.39624 1.46251 1.55610 1.22456 1.10815 1.18353 0.93171 0.91499 0.80388 0.98406 1.21904 0.96252 0.98719 1.02448 1.21562 1.12666 1.28189 0.96101 0.90696 1.25823 1.00228 0.97994 0.94647 1.70057 1.41662 1.43742 1.00213 0.85328 0.78534 0.77926 0.78450 1.20380 1.18287 1.20990 0.91677 0.89487 0.91592 0.83524 0.82947 0.83472 0.90072 0.90102 0.92639 0.93595 0.93393 0.85779 0.85961 0.75675 0.93920 0.96908 0.91531 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.27 9.79 71.23 0.70 -1.57 16 2 C -0.11 -2.61 5.89 -19.77 -0.12 -2.73 16 3 C -0.12 -2.23 9.70 22.26 0.22 -2.01 16 4 C -0.12 -1.90 10.04 22.28 0.22 -1.67 16 5 C -0.12 -2.20 9.70 22.25 0.22 -1.99 16 6 C -0.11 -2.59 5.89 -19.77 -0.12 -2.70 16 7 C -0.11 -2.19 9.79 71.23 0.70 -1.50 16 8 C 0.06 1.65 5.67 22.51 0.13 1.77 16 9 O -0.34 -9.05 8.32 -92.43 -0.77 -9.82 16 10 C 0.09 2.73 4.98 71.98 0.36 3.09 16 11 C -0.12 -3.35 6.07 29.85 0.18 -3.16 16 12 C 0.50 19.64 7.79 87.66 0.68 20.32 16 13 O -0.60 -29.35 15.65 -3.04 -0.05 -29.40 16 14 N -0.70 -28.61 5.07 -446.09 -2.26 -30.87 16 15 C 0.27 13.95 2.56 44.24 0.11 14.06 16 16 H 0.00 -0.12 7.58 -2.38 -0.02 -0.14 16 17 C -0.13 -6.82 9.26 71.98 0.67 -6.16 16 18 C -0.55 -28.80 8.73 25.60 0.22 -28.58 16 19 H 0.07 3.66 7.74 -2.91 -0.02 3.63 16 20 C 0.01 0.70 5.30 84.66 0.45 1.15 16 21 N -0.92 -52.77 11.32 21.45 0.24 -52.53 16 22 Si 0.97 41.80 29.54 68.60 2.03 43.82 16 23 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 25 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 26 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.09 1.33 8.09 -2.39 -0.02 1.31 16 28 H 0.07 1.42 7.53 -2.39 -0.02 1.40 16 29 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 30 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 31 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 32 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.08 1.30 8.09 -2.38 -0.02 1.28 16 34 H 0.05 1.25 6.33 -2.38 -0.02 1.24 16 35 H 0.05 1.46 8.10 -2.39 -0.02 1.44 16 36 H 0.05 1.51 7.22 -2.39 -0.02 1.49 16 37 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 38 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 39 H 0.41 13.67 8.54 -92.71 -0.79 12.87 16 40 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.07 3.70 6.07 -2.39 -0.01 3.69 16 43 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -68.90 358.99 4.02 -64.88 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: 0.21 Total: 25.60 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: 4.62 Total: -11.67 kcal Atomic # 7 Polarization: -81.39 SS G_CDS: -2.02 Total: -83.40 kcal Atomic # 8 Polarization: -38.41 SS G_CDS: -0.82 Total: -39.22 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.82 kcal Total: -68.90 4.02 -64.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318087.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.958 kcal (2) G-P(sol) polarization free energy of solvation -68.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds