Wall clock time and date at job start Tue Mar 31 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38288 * 119.94318 * 2 1 4 4 C 1.38129 * 120.05279 * 179.74615 * 3 2 1 5 5 C 1.38746 * 119.94586 * 0.50650 * 4 3 2 6 6 O 1.35900 * 120.05467 * 179.74253 * 5 4 3 7 7 C 1.42898 * 117.00172 * 359.72752 * 6 5 4 8 8 C 1.52997 * 109.47319 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47466 * 180.02562 * 8 7 6 10 10 O 1.21288 * 120.00038 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00369 * 180.02562 * 9 8 7 12 12 C 1.46505 * 120.00115 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.46680 * 34.99949 * 12 11 9 14 14 C 1.52995 * 109.46662 * 274.99892 * 12 11 9 15 15 C 1.50696 * 109.46926 * 155.00146 * 12 11 9 16 16 H 1.08004 * 120.00141 * 359.97438 * 15 12 11 17 17 C 1.37880 * 119.99994 * 179.97438 * 15 12 11 18 18 N 1.31517 * 119.99901 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 120.00054 * 179.97438 * 17 15 12 20 20 H 1.48492 * 109.47062 * 60.00345 * 19 17 15 21 21 H 1.48508 * 109.46722 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46972 * 299.99798 * 19 17 15 23 23 C 1.38711 * 119.88916 * 359.47295 * 5 4 3 24 24 C 1.38162 * 119.94377 * 0.27488 * 23 5 4 25 25 C 1.50704 * 119.97406 * 180.02562 * 24 23 5 26 26 H 1.09005 * 109.46662 * 270.02079 * 1 2 3 27 27 H 1.08992 * 109.47098 * 30.02116 * 1 2 3 28 28 H 1.09005 * 109.46990 * 150.02268 * 1 2 3 29 29 H 1.07992 * 119.97264 * 0.02562 * 3 2 1 30 30 H 1.08010 * 120.02456 * 180.27612 * 4 3 2 31 31 H 1.09002 * 109.47259 * 300.00149 * 7 6 5 32 32 H 1.09001 * 109.47074 * 60.00171 * 7 6 5 33 33 H 1.09002 * 109.47153 * 300.00307 * 8 7 6 34 34 H 1.08998 * 109.47533 * 59.99936 * 8 7 6 35 35 H 0.97003 * 119.99640 * 0.02562 * 11 9 8 36 36 H 1.08998 * 109.47402 * 60.00125 * 14 12 11 37 37 H 1.09004 * 109.46813 * 180.02562 * 14 12 11 38 38 H 1.08997 * 109.47619 * 299.99482 * 14 12 11 39 39 H 0.96997 * 119.99977 * 180.02562 * 18 17 15 40 40 H 1.07999 * 120.02730 * 180.29337 * 23 5 4 41 41 H 1.08993 * 109.47134 * 89.99685 * 25 24 23 42 42 H 1.09003 * 109.46632 * 209.99872 * 25 24 23 43 43 H 1.08996 * 109.46429 * 329.99445 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5785 1.2009 0.0053 5 6 4.2734 0.0001 0.0000 6 8 5.6324 0.0001 -0.0001 7 6 6.2812 1.2734 -0.0006 8 6 7.7980 1.0730 0.0000 9 6 8.4821 2.4157 0.0001 10 8 7.8216 3.4329 0.0002 11 7 9.8281 2.4863 0.0001 12 6 10.4931 3.7917 0.0007 13 1 9.9080 4.4972 0.5905 14 6 10.6126 4.3038 -1.4360 15 6 11.8685 3.6543 0.6010 16 1 12.2127 2.6911 0.9478 17 6 12.6876 4.7583 0.7076 18 7 12.2683 5.9313 0.2858 19 14 14.3923 4.5882 1.4524 20 1 15.1894 3.6264 0.6496 21 1 15.0664 5.9115 1.4529 22 1 14.2757 4.0921 2.8471 23 6 3.5788 -1.2006 0.0004 24 6 2.1971 -1.1979 0.0004 25 6 1.4417 -2.5019 0.0015 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8897 -0.5141 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6559 2.1327 0.0004 30 1 4.1172 2.1371 0.0098 31 1 5.9882 1.8301 -0.8908 32 1 5.9884 1.8307 0.8892 33 1 8.0906 0.5164 0.8904 34 1 8.0912 0.5155 -0.8895 35 1 10.3564 1.6727 -0.0004 36 1 9.6178 4.4031 -1.8703 37 1 11.1078 5.2748 -1.4356 38 1 11.1977 3.5982 -2.0258 39 1 12.8447 6.7079 0.3604 40 1 4.1174 -2.1366 0.0011 41 1 1.2596 -2.8155 1.0293 42 1 0.4895 -2.3705 -0.5125 43 1 2.0297 -3.2627 -0.5118 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064333299.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:45 Heat of formation + Delta-G solvation = -72.626958 kcal Electronic energy + Delta-G solvation = -22088.020901 eV Core-core repulsion = 18711.715600 eV Total energy + Delta-G solvation = -3376.305302 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.35068 -39.04713 -37.96855 -34.89609 -32.98561 -32.53160 -32.34248 -31.22557 -28.86183 -27.67167 -26.11632 -25.29283 -24.21665 -22.29807 -21.06836 -20.38066 -19.45183 -18.05580 -16.85625 -16.40491 -16.27289 -15.68275 -15.29920 -15.20053 -14.65959 -14.34984 -14.21018 -14.16948 -13.70572 -13.33765 -13.04052 -12.95272 -12.70611 -12.47002 -12.39673 -12.19042 -11.74622 -11.65559 -11.47351 -11.39661 -11.10994 -10.96989 -10.80997 -10.75744 -10.57482 -10.35800 -10.25716 -9.15056 -9.08385 -8.92120 -8.57885 -8.10911 -7.97419 -6.14685 -4.24330 1.19541 1.31209 3.00769 3.24160 3.28906 3.29734 3.31691 3.59239 4.17876 4.39995 4.60595 4.64327 4.84655 4.90158 4.94977 5.05285 5.05392 5.17517 5.21308 5.26740 5.37098 5.41841 5.49339 5.59038 5.60925 5.66827 5.76216 5.83719 5.90585 5.95129 6.22381 6.30798 6.50319 6.69555 6.79207 6.92980 7.11456 7.37878 7.40316 7.51423 7.66019 7.87669 8.11842 8.59964 8.73579 9.04845 9.43076 10.91240 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.044304 B = 0.002303 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.847547 B =12155.789776 C =12495.639279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.132 4.132 3 C -0.076 4.076 4 C -0.208 4.208 5 C 0.135 3.865 6 O -0.319 6.319 7 C 0.077 3.923 8 C -0.142 4.142 9 C 0.506 3.494 10 O -0.558 6.558 11 N -0.706 5.706 12 C 0.264 3.736 13 H 0.049 0.951 14 C -0.147 4.147 15 C -0.535 4.535 16 H 0.061 0.939 17 C 0.066 3.934 18 N -0.883 5.883 19 Si 0.903 3.097 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.276 1.276 23 C -0.153 4.153 24 C -0.052 4.052 25 C -0.116 4.116 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.124 0.876 30 H 0.133 0.867 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.391 0.609 36 H 0.014 0.986 37 H 0.091 0.909 38 H 0.027 0.973 39 H 0.265 0.735 40 H 0.129 0.871 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.258 -14.664 -1.223 24.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.132 4.132 3 C -0.094 4.094 4 C -0.227 4.227 5 C 0.090 3.910 6 O -0.233 6.233 7 C 0.002 3.998 8 C -0.182 4.182 9 C 0.290 3.710 10 O -0.438 6.438 11 N -0.353 5.353 12 C 0.162 3.838 13 H 0.067 0.933 14 C -0.206 4.206 15 C -0.574 4.574 16 H 0.079 0.921 17 C -0.138 4.138 18 N -0.521 5.521 19 Si 0.730 3.270 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.202 1.202 23 C -0.172 4.172 24 C -0.052 4.052 25 C -0.173 4.173 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.142 0.858 30 H 0.150 0.850 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.223 0.777 36 H 0.034 0.966 37 H 0.109 0.891 38 H 0.046 0.954 39 H 0.075 0.925 40 H 0.147 0.853 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.488 -13.859 -1.239 23.945 hybrid contribution 1.350 -0.114 0.378 1.407 sum -18.138 -13.972 -0.860 22.912 Atomic orbital electron populations 1.20767 0.91342 1.02540 1.02022 1.19638 0.95997 0.92533 1.05077 1.20822 0.93325 0.97565 0.97675 1.21383 0.95409 0.97608 1.08308 1.18960 0.82405 0.93997 0.95653 1.85970 1.16210 1.32718 1.88367 1.22473 0.91576 0.82765 1.03000 1.21520 0.93549 0.97706 1.05406 1.20081 0.83580 0.89841 0.77450 1.90672 1.64830 1.36944 1.51373 1.46514 1.05060 1.11895 1.71854 1.18766 0.91864 0.79105 0.94045 0.93329 1.22081 0.97811 1.03375 0.97326 1.21177 0.99153 0.95427 1.41609 0.92074 1.24901 0.98674 0.95033 0.95153 1.69891 1.36997 0.99422 1.45765 0.86484 0.83464 0.77341 0.79666 1.20136 1.21119 1.20164 1.20245 0.93017 0.96308 1.07632 1.19494 0.92536 0.95034 0.98154 1.20859 1.00040 0.93887 1.02476 0.91561 0.91877 0.91430 0.85846 0.84963 0.91081 0.91050 0.88291 0.88353 0.77700 0.96647 0.89091 0.95424 0.92481 0.85330 0.90982 0.91008 0.91472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 9.60 36.01 0.35 -0.44 16 2 C -0.13 -1.32 5.88 -104.60 -0.62 -1.94 16 3 C -0.08 -0.83 9.69 -39.60 -0.38 -1.21 16 4 C -0.21 -2.62 9.04 -39.43 -0.36 -2.97 16 5 C 0.14 1.79 6.69 -39.22 -0.26 1.53 16 6 O -0.32 -4.43 10.14 -19.43 -0.20 -4.63 16 7 C 0.08 1.09 4.03 37.16 0.15 1.24 16 8 C -0.14 -1.99 6.07 -27.89 -0.17 -2.16 16 9 C 0.51 9.75 7.79 -10.99 -0.09 9.67 16 10 O -0.56 -12.91 15.65 5.55 0.09 -12.83 16 11 N -0.71 -14.40 5.07 -54.93 -0.28 -14.67 16 12 C 0.26 6.67 2.56 -69.08 -0.18 6.49 16 13 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 14 C -0.15 -3.65 9.26 37.15 0.34 -3.31 16 15 C -0.54 -14.09 8.73 -34.44 -0.30 -14.39 16 16 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 17 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 18 N -0.88 -24.81 11.32 55.43 0.63 -24.18 16 19 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 20 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 C -0.15 -1.77 9.64 -39.43 -0.38 -2.15 16 24 C -0.05 -0.52 5.88 -104.64 -0.62 -1.14 16 25 C -0.12 -0.81 9.60 36.01 0.35 -0.46 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 28 H 0.07 0.40 5.94 -51.93 -0.31 0.09 16 29 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 30 H 0.13 1.65 6.30 -52.48 -0.33 1.32 16 31 H 0.07 1.03 7.63 -51.93 -0.40 0.64 16 32 H 0.07 1.05 7.61 -51.93 -0.39 0.65 16 33 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.39 6.80 8.54 -40.82 -0.35 6.46 16 36 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.41 5.94 -51.93 -0.31 0.10 16 43 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 LS Contribution 355.58 15.07 5.36 5.36 Total: -1.00 -30.85 355.58 -8.24 -39.09 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -6.56 Total: 5.92 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -2.25 Total: -9.58 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.35 Total: -38.85 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.11 Total: -17.46 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.85 -8.24 -39.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064333299.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.538 kcal (2) G-P(sol) polarization free energy of solvation -30.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds