Wall clock time and date at job start Tue Mar 31 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38288 * 119.94318 * 2 1 4 4 C 1.38129 * 120.05279 * 179.74615 * 3 2 1 5 5 C 1.38746 * 119.94586 * 0.50650 * 4 3 2 6 6 O 1.35900 * 120.05467 * 179.74253 * 5 4 3 7 7 C 1.42898 * 117.00172 * 359.72752 * 6 5 4 8 8 C 1.52997 * 109.47319 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47466 * 180.02562 * 8 7 6 10 10 O 1.21288 * 120.00038 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00369 * 180.02562 * 9 8 7 12 12 C 1.46505 * 120.00115 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.46680 * 34.99949 * 12 11 9 14 14 C 1.52995 * 109.46662 * 274.99892 * 12 11 9 15 15 C 1.50696 * 109.46926 * 155.00146 * 12 11 9 16 16 H 1.08004 * 120.00141 * 359.97438 * 15 12 11 17 17 C 1.37880 * 119.99994 * 179.97438 * 15 12 11 18 18 N 1.31517 * 119.99901 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 120.00054 * 179.97438 * 17 15 12 20 20 H 1.48492 * 109.47062 * 60.00345 * 19 17 15 21 21 H 1.48508 * 109.46722 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46972 * 299.99798 * 19 17 15 23 23 C 1.38711 * 119.88916 * 359.47295 * 5 4 3 24 24 C 1.38162 * 119.94377 * 0.27488 * 23 5 4 25 25 C 1.50704 * 119.97406 * 180.02562 * 24 23 5 26 26 H 1.09005 * 109.46662 * 270.02079 * 1 2 3 27 27 H 1.08992 * 109.47098 * 30.02116 * 1 2 3 28 28 H 1.09005 * 109.46990 * 150.02268 * 1 2 3 29 29 H 1.07992 * 119.97264 * 0.02562 * 3 2 1 30 30 H 1.08010 * 120.02456 * 180.27612 * 4 3 2 31 31 H 1.09002 * 109.47259 * 300.00149 * 7 6 5 32 32 H 1.09001 * 109.47074 * 60.00171 * 7 6 5 33 33 H 1.09002 * 109.47153 * 300.00307 * 8 7 6 34 34 H 1.08998 * 109.47533 * 59.99936 * 8 7 6 35 35 H 0.97003 * 119.99640 * 0.02562 * 11 9 8 36 36 H 1.08998 * 109.47402 * 60.00125 * 14 12 11 37 37 H 1.09004 * 109.46813 * 180.02562 * 14 12 11 38 38 H 1.08997 * 109.47619 * 299.99482 * 14 12 11 39 39 H 0.96997 * 119.99977 * 180.02562 * 18 17 15 40 40 H 1.07999 * 120.02730 * 180.29337 * 23 5 4 41 41 H 1.08993 * 109.47134 * 89.99685 * 25 24 23 42 42 H 1.09003 * 109.46632 * 209.99872 * 25 24 23 43 43 H 1.08996 * 109.46429 * 329.99445 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5785 1.2009 0.0053 5 6 4.2734 0.0001 0.0000 6 8 5.6324 0.0001 -0.0001 7 6 6.2812 1.2734 -0.0006 8 6 7.7980 1.0730 0.0000 9 6 8.4821 2.4157 0.0001 10 8 7.8216 3.4329 0.0002 11 7 9.8281 2.4863 0.0001 12 6 10.4931 3.7917 0.0007 13 1 9.9080 4.4972 0.5905 14 6 10.6126 4.3038 -1.4360 15 6 11.8685 3.6543 0.6010 16 1 12.2127 2.6911 0.9478 17 6 12.6876 4.7583 0.7076 18 7 12.2683 5.9313 0.2858 19 14 14.3923 4.5882 1.4524 20 1 15.1894 3.6264 0.6496 21 1 15.0664 5.9115 1.4529 22 1 14.2757 4.0921 2.8471 23 6 3.5788 -1.2006 0.0004 24 6 2.1971 -1.1979 0.0004 25 6 1.4417 -2.5019 0.0015 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8897 -0.5141 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6559 2.1327 0.0004 30 1 4.1172 2.1371 0.0098 31 1 5.9882 1.8301 -0.8908 32 1 5.9884 1.8307 0.8892 33 1 8.0906 0.5164 0.8904 34 1 8.0912 0.5155 -0.8895 35 1 10.3564 1.6727 -0.0004 36 1 9.6178 4.4031 -1.8703 37 1 11.1078 5.2748 -1.4356 38 1 11.1977 3.5982 -2.0258 39 1 12.8447 6.7079 0.3604 40 1 4.1174 -2.1366 0.0011 41 1 1.2596 -2.8155 1.0293 42 1 0.4895 -2.3705 -0.5125 43 1 2.0297 -3.2627 -0.5118 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064333299.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:45 Heat of formation + Delta-G solvation = -90.912722 kcal Electronic energy + Delta-G solvation = -22088.813832 eV Core-core repulsion = 18711.715600 eV Total energy + Delta-G solvation = -3377.098232 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.31640 -40.58064 -38.95353 -36.78127 -34.37753 -33.84330 -33.33758 -32.33474 -30.64072 -28.44301 -27.35521 -26.86010 -25.46662 -23.23030 -22.67509 -21.39409 -21.12549 -19.25665 -18.48756 -17.54247 -17.40825 -17.15437 -16.97742 -16.19634 -16.00994 -15.84160 -15.22332 -15.04432 -14.64967 -14.60278 -14.40687 -14.13556 -13.92356 -13.57392 -13.52979 -13.27141 -12.99323 -12.87346 -12.79157 -12.74827 -12.59982 -12.43445 -12.27440 -12.16146 -12.07202 -11.68194 -11.58401 -11.13266 -10.83668 -10.59167 -9.79436 -9.75113 -8.99334 -8.18447 -6.36155 0.34428 0.44264 1.44920 1.47027 1.54759 1.74098 1.86580 2.39071 2.73798 2.83897 3.12002 3.63933 3.87666 3.88722 3.91316 4.06646 4.09991 4.24720 4.36086 4.36685 4.47062 4.70881 4.71088 4.74818 4.76610 4.83097 4.84751 4.91064 4.96929 5.03430 5.08020 5.22151 5.23962 5.40244 5.41946 5.45598 5.58899 5.67097 5.72573 5.87995 5.89334 6.08412 6.39181 6.71340 6.90548 7.30745 7.50575 8.87631 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.044304 B = 0.002303 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.847547 B =12155.789776 C =12495.639279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.134 4.134 3 C -0.086 4.086 4 C -0.227 4.227 5 C 0.107 3.893 6 O -0.322 6.322 7 C 0.084 3.916 8 C -0.124 4.124 9 C 0.504 3.496 10 O -0.602 6.602 11 N -0.702 5.702 12 C 0.269 3.731 13 H -0.001 1.001 14 C -0.134 4.134 15 C -0.548 4.548 16 H 0.075 0.925 17 C 0.012 3.988 18 N -0.918 5.918 19 Si 0.974 3.026 20 H -0.263 1.263 21 H -0.287 1.287 22 H -0.271 1.271 23 C -0.162 4.162 24 C -0.055 4.055 25 C -0.115 4.115 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.138 0.862 30 H 0.122 0.878 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.408 0.592 36 H 0.012 0.988 37 H 0.066 0.934 38 H 0.041 0.959 39 H 0.265 0.735 40 H 0.140 0.860 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.829 -17.365 -1.044 26.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.134 4.134 3 C -0.104 4.104 4 C -0.245 4.245 5 C 0.062 3.938 6 O -0.236 6.236 7 C 0.009 3.991 8 C -0.164 4.164 9 C 0.291 3.709 10 O -0.484 6.484 11 N -0.351 5.351 12 C 0.165 3.835 13 H 0.017 0.983 14 C -0.193 4.193 15 C -0.586 4.586 16 H 0.093 0.907 17 C -0.188 4.188 18 N -0.556 5.556 19 Si 0.798 3.202 20 H -0.188 1.188 21 H -0.213 1.213 22 H -0.196 1.196 23 C -0.180 4.180 24 C -0.055 4.055 25 C -0.171 4.171 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.102 0.898 29 H 0.156 0.844 30 H 0.140 0.860 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.142 0.858 34 H 0.145 0.855 35 H 0.244 0.756 36 H 0.031 0.969 37 H 0.085 0.915 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.157 0.843 41 H 0.101 0.899 42 H 0.106 0.894 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -20.068 -16.614 -1.063 26.075 hybrid contribution 1.383 0.719 0.321 1.592 sum -18.685 -15.895 -0.742 24.543 Atomic orbital electron populations 1.20837 0.89002 1.03730 1.02992 1.20062 0.97763 0.92091 1.03509 1.21094 0.92814 0.98950 0.97574 1.21439 0.96365 0.97193 1.09542 1.19248 0.82098 0.94930 0.97492 1.85922 1.16887 1.31907 1.88891 1.22271 0.91799 0.83059 1.02017 1.21387 0.92683 0.94398 1.07918 1.20916 0.82951 0.91364 0.75699 1.90656 1.65607 1.39211 1.52971 1.46249 1.05781 1.10888 1.72183 1.18364 0.91343 0.80440 0.93303 0.98343 1.21904 0.97537 1.02448 0.97442 1.21524 0.99419 0.96096 1.41553 0.90695 1.25832 1.02774 0.94645 0.95510 1.70048 1.38456 1.00216 1.46874 0.85370 0.78505 0.77332 0.78957 1.18800 1.21271 1.19581 1.20515 0.93878 0.96083 1.07532 1.19929 0.92207 0.96607 0.96786 1.20938 1.00400 0.92235 1.03522 0.90559 0.91193 0.89820 0.84389 0.86041 0.92131 0.92286 0.85765 0.85550 0.75625 0.96853 0.91503 0.93963 0.92539 0.84256 0.89856 0.89443 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 9.60 71.24 0.68 -0.58 16 2 C -0.13 -2.47 5.88 -19.85 -0.12 -2.59 16 3 C -0.09 -1.86 9.69 22.26 0.22 -1.64 16 4 C -0.23 -5.87 9.04 22.37 0.20 -5.67 16 5 C 0.11 2.84 6.69 22.50 0.15 2.99 16 6 O -0.32 -8.86 10.14 -92.43 -0.94 -9.80 16 7 C 0.08 2.41 4.03 71.98 0.29 2.70 16 8 C -0.12 -3.33 6.07 29.85 0.18 -3.15 16 9 C 0.50 19.46 7.79 87.66 0.68 20.14 16 10 O -0.60 -28.89 15.65 -3.05 -0.05 -28.94 16 11 N -0.70 -28.45 5.07 -446.10 -2.26 -30.71 16 12 C 0.27 13.90 2.56 44.24 0.11 14.01 16 13 H 0.00 -0.08 7.58 -2.39 -0.02 -0.10 16 14 C -0.13 -6.81 9.26 71.98 0.67 -6.14 16 15 C -0.55 -28.79 8.73 25.60 0.22 -28.57 16 16 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 17 C 0.01 0.67 5.30 84.66 0.45 1.12 16 18 N -0.92 -52.66 11.32 21.45 0.24 -52.42 16 19 Si 0.97 41.79 29.54 68.60 2.03 43.82 16 20 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 21 H -0.29 -12.28 7.11 99.48 0.71 -11.58 16 22 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 23 C -0.16 -3.58 9.64 22.36 0.22 -3.36 16 24 C -0.06 -1.01 5.88 -19.88 -0.12 -1.13 16 25 C -0.11 -1.26 9.60 71.24 0.68 -0.57 16 26 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.07 0.73 8.08 -2.39 -0.02 0.71 16 28 H 0.08 0.70 5.94 -2.38 -0.01 0.69 16 29 H 0.14 2.42 8.06 -2.91 -0.02 2.39 16 30 H 0.12 3.28 6.30 -2.91 -0.02 3.27 16 31 H 0.06 1.84 7.63 -2.39 -0.02 1.82 16 32 H 0.06 1.81 7.61 -2.39 -0.02 1.79 16 33 H 0.12 2.77 8.14 -2.39 -0.02 2.76 16 34 H 0.13 2.75 8.14 -2.39 -0.02 2.73 16 35 H 0.41 13.57 8.54 -92.71 -0.79 12.78 16 36 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.07 3.71 6.07 -2.38 -0.01 3.70 16 38 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 40 H 0.14 2.66 8.06 -2.91 -0.02 2.63 16 41 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.09 0.69 5.94 -2.39 -0.01 0.68 16 43 H 0.07 0.72 8.08 -2.39 -0.02 0.70 16 Total: -1.00 -68.56 355.58 3.77 -64.80 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: 0.22 Total: 25.68 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: 4.52 Total: -12.43 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: -2.02 Total: -83.13 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: -0.98 Total: -38.74 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -68.56 3.77 -64.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064333299.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.117 kcal (2) G-P(sol) polarization free energy of solvation -68.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds