Wall clock time and date at job start Tue Mar 31 2020 06:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38291 * 119.97683 * 2 1 4 4 C 1.38243 * 120.11156 * 179.97438 * 3 2 1 5 5 C 1.38156 * 120.06003 * 359.76950 * 4 3 2 6 6 C 1.50700 * 120.03236 * 180.25136 * 5 4 3 7 7 C 1.38716 * 119.94242 * 0.52841 * 5 4 3 8 8 O 1.35895 * 120.05838 * 179.72233 * 7 5 4 9 9 C 1.42900 * 117.00528 * 179.72667 * 8 7 5 10 10 C 1.52999 * 109.47609 * 180.02562 * 9 8 7 11 11 C 1.50705 * 109.47049 * 180.02562 * 10 9 8 12 12 O 1.21280 * 119.99748 * 359.97438 * 11 10 9 13 13 N 1.34769 * 119.99510 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99798 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.47068 * 34.99973 * 14 13 11 16 16 C 1.52997 * 109.47212 * 274.99913 * 14 13 11 17 17 C 1.50699 * 109.47262 * 154.99826 * 14 13 11 18 18 H 1.08000 * 119.99792 * 0.02562 * 17 14 13 19 19 C 1.37878 * 119.99902 * 179.97438 * 17 14 13 20 20 N 1.31515 * 120.00126 * 0.02562 * 19 17 14 21 21 Si 1.86803 * 119.99745 * 180.02562 * 19 17 14 22 22 H 1.48501 * 109.47438 * 0.02562 * 21 19 17 23 23 H 1.48491 * 109.47045 * 120.00577 * 21 19 17 24 24 H 1.48501 * 109.46950 * 240.00369 * 21 19 17 25 25 C 1.38126 * 119.97061 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.47324 * 269.97586 * 1 2 3 27 27 H 1.09000 * 109.46979 * 29.97667 * 1 2 3 28 28 H 1.08993 * 109.47465 * 149.97594 * 1 2 3 29 29 H 1.07998 * 119.93688 * 0.02562 * 3 2 1 30 30 H 1.08004 * 119.96462 * 180.02562 * 4 3 2 31 31 H 1.08993 * 109.47192 * 270.27747 * 6 5 4 32 32 H 1.08996 * 109.46736 * 30.28059 * 6 5 4 33 33 H 1.08999 * 109.47314 * 150.27272 * 6 5 4 34 34 H 1.09000 * 109.47084 * 59.99431 * 9 8 7 35 35 H 1.09000 * 109.47179 * 300.00186 * 9 8 7 36 36 H 1.08995 * 109.46779 * 59.99731 * 10 9 8 37 37 H 1.09000 * 109.46580 * 299.99820 * 10 9 8 38 38 H 0.97005 * 120.00963 * 359.97438 * 13 11 10 39 39 H 1.08996 * 109.47853 * 179.97438 * 16 14 13 40 40 H 1.09002 * 109.47153 * 300.00008 * 16 14 13 41 41 H 1.08998 * 109.47533 * 59.99637 * 16 14 13 42 42 H 0.96999 * 120.00073 * 179.97438 * 20 19 17 43 43 H 1.07997 * 120.02731 * 0.02861 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0005 5 6 4.2752 0.0071 0.0059 6 6 5.7822 0.0114 0.0122 7 6 3.5845 -1.1959 -0.0004 8 8 4.2656 -2.3718 -0.0008 9 6 3.4891 -3.5715 -0.0014 10 6 4.4229 -4.7835 -0.0012 11 6 3.6038 -6.0486 -0.0024 12 8 2.3926 -5.9867 -0.0028 13 7 4.2175 -7.2485 -0.0019 14 6 3.4213 -8.4783 -0.0025 15 1 2.5176 -8.3258 -0.5926 16 6 3.0376 -8.8381 1.4342 17 6 4.2297 -9.5998 -0.6024 18 1 5.2360 -9.4150 -0.9482 19 6 3.6850 -10.8619 -0.7088 20 7 2.4597 -11.0870 -0.2872 21 14 4.6873 -12.2522 -1.4517 22 1 6.0256 -11.7425 -1.8448 23 1 4.8459 -13.3377 -0.4510 24 1 3.9874 -12.7817 -2.6496 25 6 2.1970 -1.1966 -0.0005 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3634 -0.8897 -0.5142 29 1 1.6565 2.1324 0.0004 30 1 4.1176 2.1381 0.0010 31 1 6.1498 0.0153 -1.0139 32 1 6.1407 0.9009 0.5301 33 1 6.1459 -0.8790 0.5251 34 1 2.8603 -3.5969 -0.8913 35 1 2.8603 -3.5976 0.8886 36 1 5.0513 -4.7578 0.8890 37 1 5.0520 -4.7575 -0.8909 38 1 5.1863 -7.2980 -0.0012 39 1 2.4449 -9.7529 1.4338 40 1 3.9413 -8.9906 2.0243 41 1 2.4529 -8.0270 1.8682 42 1 2.0764 -11.9748 -0.3624 43 1 1.6569 -2.1318 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064333321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:32 Heat of formation + Delta-G solvation = -75.178996 kcal Electronic energy + Delta-G solvation = -22362.862146 eV Core-core repulsion = 18986.446180 eV Total energy + Delta-G solvation = -3376.415967 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.39908 -39.02044 -37.66586 -34.90332 -33.95568 -32.49270 -31.74824 -29.96007 -29.33843 -28.75797 -25.33347 -25.13863 -24.41859 -22.09030 -21.25324 -20.65032 -19.42889 -17.85327 -16.84417 -16.31437 -16.24385 -15.74880 -15.41463 -15.22085 -14.63355 -14.40167 -14.04741 -13.79543 -13.66103 -13.36853 -13.00013 -12.93772 -12.76067 -12.50438 -12.34351 -12.01704 -11.73404 -11.68649 -11.45782 -11.40668 -11.11332 -10.98013 -10.84046 -10.77027 -10.64473 -10.33662 -10.27261 -9.15661 -9.07295 -8.81438 -8.59167 -8.13378 -7.97931 -6.15650 -4.25088 1.18307 1.34678 3.00992 3.21672 3.28578 3.30166 3.32761 3.59976 4.17913 4.39832 4.58720 4.67074 4.86326 4.94033 5.02140 5.04836 5.11310 5.16921 5.35714 5.41366 5.44171 5.46636 5.54681 5.58136 5.64855 5.69172 5.83194 5.83793 5.86290 6.12381 6.22852 6.36144 6.48251 6.72497 6.78564 6.92341 7.10972 7.36865 7.39750 7.51017 7.65617 7.87142 8.11172 8.59496 8.73323 9.04389 9.42548 10.90411 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029846 B = 0.002626 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.934250 B =10660.856353 C =11296.451665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.053 4.053 3 C -0.160 4.160 4 C -0.083 4.083 5 C -0.128 4.128 6 C -0.103 4.103 7 C 0.139 3.861 8 O -0.315 6.315 9 C 0.077 3.923 10 C -0.141 4.141 11 C 0.506 3.494 12 O -0.558 6.558 13 N -0.706 5.706 14 C 0.263 3.737 15 H 0.049 0.951 16 C -0.147 4.147 17 C -0.534 4.534 18 H 0.062 0.938 19 C 0.065 3.935 20 N -0.883 5.883 21 Si 0.902 3.098 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.283 1.283 25 C -0.205 4.205 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.120 0.880 30 H 0.126 0.874 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.391 0.609 39 H 0.091 0.909 40 H 0.027 0.973 41 H 0.014 0.986 42 H 0.264 0.736 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.041 22.152 1.273 22.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.053 4.053 3 C -0.178 4.178 4 C -0.101 4.101 5 C -0.128 4.128 6 C -0.160 4.160 7 C 0.093 3.907 8 O -0.229 6.229 9 C 0.001 3.999 10 C -0.181 4.181 11 C 0.290 3.710 12 O -0.438 6.438 13 N -0.353 5.353 14 C 0.162 3.838 15 H 0.067 0.933 16 C -0.206 4.206 17 C -0.572 4.572 18 H 0.080 0.920 19 C -0.138 4.138 20 N -0.521 5.521 21 Si 0.730 3.270 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.209 1.209 25 C -0.224 4.224 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.138 0.862 30 H 0.144 0.856 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.223 0.777 39 H 0.109 0.891 40 H 0.046 0.954 41 H 0.033 0.967 42 H 0.074 0.926 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.239 21.945 1.286 22.097 hybrid contribution 0.727 -0.965 -0.357 1.260 sum 2.966 20.980 0.929 21.209 Atomic orbital electron populations 1.20821 0.91077 1.02916 1.02504 1.19708 0.96028 0.92490 0.97067 1.20881 0.94085 0.97366 1.05488 1.20812 0.93964 0.96669 0.98637 1.19248 0.96506 0.90345 1.06745 1.20582 0.90610 1.02630 1.02163 1.18789 0.90266 0.85642 0.95960 1.85962 1.36227 1.12416 1.88274 1.22473 0.93397 0.81012 1.02970 1.21517 0.99326 0.91909 1.05382 1.20081 0.88403 0.85023 0.77454 1.90670 1.14260 1.87516 1.51370 1.46512 1.10419 1.06535 1.71849 1.18775 0.91866 0.79145 0.94046 0.93318 1.22081 0.99551 1.01636 0.97330 1.21255 1.00763 0.93791 1.41437 0.91968 1.24900 0.95061 0.98655 0.95152 1.69911 1.13954 1.22325 1.45895 0.86380 0.80060 0.81719 0.78863 1.19716 1.20849 1.20852 1.21262 0.93039 0.99297 1.08756 0.90976 0.91468 0.91290 0.86161 0.85624 0.91558 0.91950 0.91093 0.91077 0.91139 0.88368 0.88300 0.77696 0.89092 0.95415 0.96657 0.92591 0.84982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 10.01 36.00 0.36 -0.65 16 2 C -0.05 -0.58 5.88 -104.65 -0.62 -1.20 16 3 C -0.16 -1.59 9.70 -39.56 -0.38 -1.98 16 4 C -0.08 -0.82 9.70 -39.61 -0.38 -1.21 16 5 C -0.13 -1.47 5.89 -104.48 -0.62 -2.09 16 6 C -0.10 -0.98 9.79 36.01 0.35 -0.62 16 7 C 0.14 1.83 6.66 -39.21 -0.26 1.57 16 8 O -0.32 -4.29 9.18 -19.41 -0.18 -4.47 16 9 C 0.08 1.08 4.03 37.16 0.15 1.23 16 10 C -0.14 -1.96 6.07 -27.88 -0.17 -2.13 16 11 C 0.51 9.69 7.79 -10.99 -0.09 9.61 16 12 O -0.56 -12.86 15.65 5.56 0.09 -12.77 16 13 N -0.71 -14.32 5.07 -54.93 -0.28 -14.60 16 14 C 0.26 6.63 2.56 -69.08 -0.18 6.45 16 15 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 16 C -0.15 -3.64 9.26 37.16 0.34 -3.30 16 17 C -0.53 -14.03 8.73 -34.44 -0.30 -14.33 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 19 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 20 N -0.88 -24.76 11.32 55.43 0.63 -24.14 16 21 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 22 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 C -0.20 -2.60 8.69 -39.43 -0.34 -2.94 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 28 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 29 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 30 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 33 H 0.07 0.72 7.53 -51.93 -0.39 0.33 16 34 H 0.07 1.04 7.62 -51.93 -0.40 0.64 16 35 H 0.07 1.02 7.62 -51.93 -0.40 0.63 16 36 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.39 6.77 8.54 -40.82 -0.35 6.42 16 39 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.13 1.68 6.30 -52.49 -0.33 1.35 16 LS Contribution 358.66 15.07 5.40 5.40 Total: -1.00 -30.71 358.66 -8.33 -39.04 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -6.75 Total: 5.97 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -2.22 Total: -9.92 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.35 Total: -38.73 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.09 Total: -17.24 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.71 -8.33 -39.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064333321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.136 kcal (2) G-P(sol) polarization free energy of solvation -30.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds