Wall clock time and date at job start Tue Mar 31 2020 06:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38291 * 119.97683 * 2 1 4 4 C 1.38243 * 120.11156 * 179.97438 * 3 2 1 5 5 C 1.38156 * 120.06003 * 359.76950 * 4 3 2 6 6 C 1.50700 * 120.03236 * 180.25136 * 5 4 3 7 7 C 1.38716 * 119.94242 * 0.52841 * 5 4 3 8 8 O 1.35895 * 120.05838 * 179.72233 * 7 5 4 9 9 C 1.42900 * 117.00528 * 179.72667 * 8 7 5 10 10 C 1.52999 * 109.47609 * 180.02562 * 9 8 7 11 11 C 1.50705 * 109.47049 * 180.02562 * 10 9 8 12 12 O 1.21280 * 119.99748 * 359.97438 * 11 10 9 13 13 N 1.34769 * 119.99510 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99798 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.47068 * 34.99973 * 14 13 11 16 16 C 1.52997 * 109.47212 * 274.99913 * 14 13 11 17 17 C 1.50699 * 109.47262 * 154.99826 * 14 13 11 18 18 H 1.08000 * 119.99792 * 0.02562 * 17 14 13 19 19 C 1.37878 * 119.99902 * 179.97438 * 17 14 13 20 20 N 1.31515 * 120.00126 * 0.02562 * 19 17 14 21 21 Si 1.86803 * 119.99745 * 180.02562 * 19 17 14 22 22 H 1.48501 * 109.47438 * 0.02562 * 21 19 17 23 23 H 1.48491 * 109.47045 * 120.00577 * 21 19 17 24 24 H 1.48501 * 109.46950 * 240.00369 * 21 19 17 25 25 C 1.38126 * 119.97061 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.47324 * 269.97586 * 1 2 3 27 27 H 1.09000 * 109.46979 * 29.97667 * 1 2 3 28 28 H 1.08993 * 109.47465 * 149.97594 * 1 2 3 29 29 H 1.07998 * 119.93688 * 0.02562 * 3 2 1 30 30 H 1.08004 * 119.96462 * 180.02562 * 4 3 2 31 31 H 1.08993 * 109.47192 * 270.27747 * 6 5 4 32 32 H 1.08996 * 109.46736 * 30.28059 * 6 5 4 33 33 H 1.08999 * 109.47314 * 150.27272 * 6 5 4 34 34 H 1.09000 * 109.47084 * 59.99431 * 9 8 7 35 35 H 1.09000 * 109.47179 * 300.00186 * 9 8 7 36 36 H 1.08995 * 109.46779 * 59.99731 * 10 9 8 37 37 H 1.09000 * 109.46580 * 299.99820 * 10 9 8 38 38 H 0.97005 * 120.00963 * 359.97438 * 13 11 10 39 39 H 1.08996 * 109.47853 * 179.97438 * 16 14 13 40 40 H 1.09002 * 109.47153 * 300.00008 * 16 14 13 41 41 H 1.08998 * 109.47533 * 59.99637 * 16 14 13 42 42 H 0.96999 * 120.00073 * 179.97438 * 20 19 17 43 43 H 1.07997 * 120.02731 * 0.02861 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0005 5 6 4.2752 0.0071 0.0059 6 6 5.7822 0.0114 0.0122 7 6 3.5845 -1.1959 -0.0004 8 8 4.2656 -2.3718 -0.0008 9 6 3.4891 -3.5715 -0.0014 10 6 4.4229 -4.7835 -0.0012 11 6 3.6038 -6.0486 -0.0024 12 8 2.3926 -5.9867 -0.0028 13 7 4.2175 -7.2485 -0.0019 14 6 3.4213 -8.4783 -0.0025 15 1 2.5176 -8.3258 -0.5926 16 6 3.0376 -8.8381 1.4342 17 6 4.2297 -9.5998 -0.6024 18 1 5.2360 -9.4150 -0.9482 19 6 3.6850 -10.8619 -0.7088 20 7 2.4597 -11.0870 -0.2872 21 14 4.6873 -12.2522 -1.4517 22 1 6.0256 -11.7425 -1.8448 23 1 4.8459 -13.3377 -0.4510 24 1 3.9874 -12.7817 -2.6496 25 6 2.1970 -1.1966 -0.0005 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3634 -0.8897 -0.5142 29 1 1.6565 2.1324 0.0004 30 1 4.1176 2.1381 0.0010 31 1 6.1498 0.0153 -1.0139 32 1 6.1407 0.9009 0.5301 33 1 6.1459 -0.8790 0.5251 34 1 2.8603 -3.5969 -0.8913 35 1 2.8603 -3.5976 0.8886 36 1 5.0513 -4.7578 0.8890 37 1 5.0520 -4.7575 -0.8909 38 1 5.1863 -7.2980 -0.0012 39 1 2.4449 -9.7529 1.4338 40 1 3.9413 -8.9906 2.0243 41 1 2.4529 -8.0270 1.8682 42 1 2.0764 -11.9748 -0.3624 43 1 1.6569 -2.1318 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064333321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:32 Heat of formation + Delta-G solvation = -93.138903 kcal Electronic energy + Delta-G solvation = -22363.640946 eV Core-core repulsion = 18986.446180 eV Total energy + Delta-G solvation = -3377.194767 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.35921 -40.57600 -38.64473 -36.78001 -34.77540 -34.36615 -33.04102 -31.03073 -30.42308 -30.08375 -27.36511 -26.16695 -25.39969 -23.31199 -22.47083 -21.88469 -21.09082 -19.11219 -18.42902 -17.47275 -17.34712 -17.16835 -16.95397 -16.39544 -16.02250 -15.87163 -15.10585 -14.78802 -14.73753 -14.55260 -14.37830 -14.11613 -13.81068 -13.77124 -13.45334 -13.42151 -13.02232 -12.86252 -12.83218 -12.71803 -12.60816 -12.35206 -12.28888 -12.18777 -12.12567 -11.73092 -11.67305 -11.11049 -10.84034 -10.60919 -9.79311 -9.66303 -9.01160 -8.19131 -6.36604 0.34621 0.48049 1.43947 1.45004 1.56999 1.74173 1.87486 2.38767 2.75906 2.84485 3.11733 3.63617 3.81526 3.89303 3.91092 4.09848 4.12013 4.23379 4.33687 4.45177 4.61027 4.69650 4.70952 4.74669 4.77376 4.81507 4.82990 4.87305 4.89748 4.91028 5.07925 5.15972 5.38243 5.40251 5.41914 5.55088 5.59081 5.66039 5.66909 5.87886 5.90414 6.08263 6.39383 6.71594 6.90541 7.30616 7.50550 8.87473 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029846 B = 0.002626 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.934250 B =10660.856353 C =11296.451665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.065 4.065 3 C -0.158 4.158 4 C -0.082 4.082 5 C -0.138 4.138 6 C -0.101 4.101 7 C 0.110 3.890 8 O -0.316 6.316 9 C 0.085 3.915 10 C -0.123 4.123 11 C 0.503 3.497 12 O -0.602 6.602 13 N -0.702 5.702 14 C 0.269 3.731 15 H -0.001 1.001 16 C -0.135 4.135 17 C -0.546 4.546 18 H 0.075 0.925 19 C 0.013 3.987 20 N -0.918 5.918 21 Si 0.973 3.027 22 H -0.259 1.259 23 H -0.279 1.279 24 H -0.284 1.284 25 C -0.225 4.225 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.060 0.940 29 H 0.148 0.852 30 H 0.157 0.843 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.408 0.592 39 H 0.066 0.934 40 H 0.042 0.958 41 H 0.012 0.988 42 H 0.265 0.735 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.166 23.987 1.088 24.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.065 4.065 3 C -0.176 4.176 4 C -0.099 4.099 5 C -0.139 4.139 6 C -0.158 4.158 7 C 0.065 3.935 8 O -0.230 6.230 9 C 0.009 3.991 10 C -0.163 4.163 11 C 0.290 3.710 12 O -0.485 6.485 13 N -0.351 5.351 14 C 0.165 3.835 15 H 0.017 0.983 16 C -0.194 4.194 17 C -0.584 4.584 18 H 0.093 0.907 19 C -0.187 4.187 20 N -0.557 5.557 21 Si 0.798 3.202 22 H -0.183 1.183 23 H -0.204 1.204 24 H -0.210 1.210 25 C -0.244 4.244 26 H 0.097 0.903 27 H 0.105 0.895 28 H 0.079 0.921 29 H 0.166 0.834 30 H 0.175 0.825 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.244 0.756 39 H 0.085 0.915 40 H 0.061 0.939 41 H 0.031 0.969 42 H 0.075 0.925 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.406 23.812 1.105 24.241 hybrid contribution -0.002 -1.414 -0.295 1.445 sum 4.403 22.397 0.809 22.841 Atomic orbital electron populations 1.20859 0.89720 1.03515 1.03123 1.20036 0.97255 0.92415 0.96823 1.21265 0.94460 0.97919 1.03972 1.21223 0.94194 0.97309 0.97204 1.19620 0.97723 0.90168 1.06388 1.20612 0.89251 1.03233 1.02684 1.19117 0.90685 0.85955 0.97770 1.85918 1.35968 1.12358 1.88770 1.22252 0.93263 0.81743 1.01856 1.21379 0.98551 0.88452 1.07904 1.20923 0.88227 0.86108 0.75700 1.90654 1.16643 1.88196 1.52973 1.46245 1.11024 1.05634 1.72177 1.18368 0.90726 0.81083 0.93286 0.98320 1.21906 0.99678 1.00303 0.97467 1.21587 1.01294 0.94149 1.41385 0.90689 1.25821 0.96033 1.01360 0.95504 1.70060 1.15681 1.22948 1.46985 0.85276 0.78877 0.78318 0.77737 1.18269 1.20449 1.21030 1.21330 0.93286 0.99655 1.10134 0.90284 0.89495 0.92077 0.83406 0.82530 0.91009 0.89771 0.92075 0.92450 0.92325 0.85547 0.85761 0.75625 0.91520 0.93929 0.96879 0.92545 0.86364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.92 10.01 71.23 0.71 -1.20 16 2 C -0.07 -1.39 5.88 -19.88 -0.12 -1.51 16 3 C -0.16 -2.78 9.70 22.28 0.22 -2.57 16 4 C -0.08 -1.41 9.70 22.25 0.22 -1.19 16 5 C -0.14 -2.98 5.89 -19.77 -0.12 -3.09 16 6 C -0.10 -1.71 9.79 71.24 0.70 -1.01 16 7 C 0.11 2.89 6.66 22.51 0.15 3.04 16 8 O -0.32 -8.54 9.18 -92.37 -0.85 -9.39 16 9 C 0.08 2.41 4.03 71.98 0.29 2.70 16 10 C -0.12 -3.27 6.07 29.85 0.18 -3.09 16 11 C 0.50 19.38 7.79 87.66 0.68 20.07 16 12 O -0.60 -28.86 15.65 -3.03 -0.05 -28.91 16 13 N -0.70 -28.33 5.07 -446.10 -2.26 -30.59 16 14 C 0.27 13.85 2.56 44.24 0.11 13.96 16 15 H 0.00 -0.07 7.58 -2.39 -0.02 -0.09 16 16 C -0.13 -6.81 9.26 71.98 0.67 -6.14 16 17 C -0.55 -28.64 8.73 25.60 0.22 -28.42 16 18 H 0.08 3.66 7.74 -2.91 -0.02 3.63 16 19 C 0.01 0.68 5.30 84.65 0.45 1.13 16 20 N -0.92 -52.63 11.32 21.45 0.24 -52.38 16 21 Si 0.97 41.75 29.54 68.60 2.03 43.77 16 22 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 23 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 24 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 25 C -0.23 -5.87 8.69 22.37 0.19 -5.68 16 26 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.09 1.07 8.08 -2.39 -0.02 1.05 16 28 H 0.06 1.09 8.08 -2.39 -0.02 1.07 16 29 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 30 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 1.03 8.09 -2.39 -0.02 1.01 16 33 H 0.06 1.15 7.53 -2.39 -0.02 1.13 16 34 H 0.06 1.77 7.62 -2.39 -0.02 1.75 16 35 H 0.06 1.78 7.62 -2.39 -0.02 1.77 16 36 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 37 H 0.12 2.74 8.14 -2.39 -0.02 2.73 16 38 H 0.41 13.51 8.54 -92.70 -0.79 12.72 16 39 H 0.07 3.70 6.07 -2.39 -0.01 3.69 16 40 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 43 H 0.12 3.28 6.30 -2.91 -0.02 3.26 16 Total: -1.00 -68.47 358.66 3.88 -64.59 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: 0.21 Total: 25.92 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: 4.56 Total: -13.01 kcal Atomic # 7 Polarization: -80.96 SS G_CDS: -2.02 Total: -82.98 kcal Atomic # 8 Polarization: -37.40 SS G_CDS: -0.90 Total: -38.29 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.77 kcal Total: -68.47 3.88 -64.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064333321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.551 kcal (2) G-P(sol) polarization free energy of solvation -68.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds