Wall clock time and date at job start Tue Mar 31 2020 07:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.48216 * 2 1 4 4 C 1.53096 * 109.48007 * 120.02288 * 2 1 3 5 5 C 1.53177 * 109.16237 * 62.37531 * 4 2 1 6 6 H 1.08997 * 109.54260 * 297.01999 * 5 4 2 7 7 N 1.46503 * 109.53884 * 176.84802 * 5 4 2 8 8 C 1.39784 * 119.99646 * 155.17547 * 7 5 4 9 9 C 1.38952 * 120.00433 * 179.97438 * 8 7 5 10 10 C 1.38016 * 119.99222 * 180.02562 * 9 8 7 11 11 C 1.38898 * 120.00481 * 359.97438 * 10 9 8 12 12 O 1.35795 * 119.98946 * 180.02562 * 11 10 9 13 13 C 1.34811 * 117.00069 * 5.54594 * 12 11 10 14 14 H 1.07996 * 120.00278 * 354.94303 * 13 12 11 15 15 C 1.38630 * 119.99901 * 174.66583 * 13 12 11 16 16 N 1.31579 * 119.99909 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00157 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46900 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47208 * 119.99672 * 17 15 13 20 20 H 1.48500 * 109.47084 * 239.99895 * 17 15 13 21 21 C 1.38893 * 120.01535 * 0.30020 * 11 10 9 22 22 C 1.38013 * 120.00341 * 359.44607 * 21 11 10 23 23 C 1.53175 * 109.11435 * 56.93471 * 5 4 2 24 24 C 1.53104 * 109.15419 * 303.15465 * 23 5 4 25 25 O 1.42901 * 109.47913 * 239.96602 * 2 1 3 26 26 H 1.08998 * 109.46734 * 299.97917 * 1 2 3 27 27 H 1.09001 * 109.47165 * 59.97735 * 1 2 3 28 28 H 1.08997 * 109.47431 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47100 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46690 * 300.02369 * 3 2 1 31 31 H 1.08992 * 109.47393 * 60.02426 * 3 2 1 32 32 H 1.08994 * 109.52062 * 302.46458 * 4 2 1 33 33 H 1.09006 * 109.57158 * 182.30771 * 4 2 1 34 34 H 0.96996 * 120.00535 * 335.17269 * 7 5 4 35 35 H 1.07992 * 120.00414 * 359.97438 * 9 8 7 36 36 H 1.08001 * 119.99251 * 179.97438 * 10 9 8 37 37 H 0.97000 * 119.99981 * 180.02562 * 16 15 13 38 38 H 1.07999 * 120.00179 * 179.70368 * 21 11 10 39 39 H 1.08003 * 120.00584 * 180.26940 * 22 21 11 40 40 H 1.08999 * 109.52247 * 62.96856 * 23 5 4 41 41 H 1.08997 * 109.52621 * 183.16012 * 23 5 4 42 42 H 1.08998 * 109.40569 * 297.48825 * 24 23 5 43 43 H 1.09004 * 109.49348 * 177.51024 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0403 1.4424 0.0000 4 6 2.0405 -0.7222 1.2497 5 6 1.5757 -2.1812 1.2124 6 1 0.4868 -2.2179 1.2427 7 7 2.1225 -2.8993 2.3664 8 6 1.4729 -4.0373 2.8533 9 6 1.9917 -4.7188 3.9474 10 6 1.3504 -5.8426 4.4276 11 6 0.1863 -6.2920 3.8176 12 8 -0.4447 -7.3975 4.2906 13 6 0.0442 -7.9443 5.4218 14 1 0.9481 -7.5525 5.8642 15 6 -0.6166 -9.0059 6.0202 16 7 -1.7212 -9.4795 5.4845 17 14 0.0603 -9.7632 7.5879 18 1 1.3035 -9.0539 7.9835 19 1 -0.9469 -9.6399 8.6722 20 1 0.3626 -11.1981 7.3541 21 6 -0.3293 -5.6143 2.7203 22 6 0.3086 -4.4874 2.2430 23 6 2.0746 -2.8337 -0.0806 24 6 1.5645 -2.0286 -1.2788 25 8 2.0065 -0.6743 -1.1663 26 1 -0.3633 0.5135 0.8902 27 1 -0.3633 0.5142 -0.8898 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1302 1.4422 -0.0005 30 1 1.6766 1.9564 -0.8898 31 1 1.6774 1.9562 0.8901 32 1 1.6421 -0.2355 2.1398 33 1 3.1298 -0.6874 1.2721 34 1 2.9352 -2.5852 2.7925 35 1 2.8970 -4.3696 4.4215 36 1 1.7538 -6.3725 5.2778 37 1 -2.1838 -10.2221 5.9035 38 1 -1.2318 -5.9668 2.2432 39 1 -0.0947 -3.9579 1.3924 40 1 3.1645 -2.8428 -0.0869 41 1 1.7005 -3.8557 -0.1408 42 1 0.4749 -2.0552 -1.2955 43 1 1.9527 -2.4624 -2.2003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070346054.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:52 Heat of formation + Delta-G solvation = -50.170152 kcal Electronic energy + Delta-G solvation = -23136.735830 eV Core-core repulsion = 19761.404328 eV Total energy + Delta-G solvation = -3375.331502 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.36647 -38.92787 -37.09326 -34.92109 -33.81685 -32.22807 -31.35564 -30.10951 -28.52825 -27.60464 -26.70871 -25.13700 -23.97905 -22.34040 -21.61964 -20.49563 -19.42141 -17.82664 -17.18464 -16.66122 -16.29231 -15.97390 -15.26563 -14.89926 -14.42988 -14.38585 -14.17917 -13.77495 -13.46324 -13.42632 -13.14500 -12.81334 -12.56883 -12.44214 -12.43044 -12.17730 -11.96127 -11.86634 -11.58296 -11.41340 -11.35199 -11.22254 -11.08590 -10.83895 -10.53380 -10.35126 -10.24417 -9.69296 -9.22981 -9.18295 -8.45176 -8.17917 -6.40697 -6.32743 -3.89936 2.19304 2.56408 3.17770 3.19160 3.24367 3.50977 3.74523 4.05730 4.44051 4.56116 4.61688 4.73783 4.79284 4.98995 5.03690 5.17884 5.20404 5.21757 5.31372 5.39478 5.41373 5.49786 5.50968 5.61075 5.65910 5.72160 5.76192 5.81921 5.83272 5.97391 5.99098 6.17110 6.21746 6.27083 6.53720 6.85708 6.90856 7.07518 7.12877 7.32447 7.44707 7.63874 7.97395 8.11804 8.23775 9.13348 9.87872 10.86090 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.040649 B = 0.002852 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.666210 B = 9814.242043 C =10045.663956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.115 3.885 3 C -0.137 4.137 4 C -0.148 4.148 5 C 0.160 3.840 6 H 0.077 0.923 7 N -0.754 5.754 8 C 0.125 3.875 9 C -0.142 4.142 10 C -0.190 4.190 11 C 0.114 3.886 12 O -0.189 6.189 13 C -0.386 4.386 14 H 0.088 0.912 15 C 0.036 3.964 16 N -0.869 5.869 17 Si 0.938 3.062 18 H -0.268 1.268 19 H -0.277 1.277 20 H -0.277 1.277 21 C -0.150 4.150 22 C -0.147 4.147 23 C -0.173 4.173 24 C 0.060 3.940 25 O -0.375 6.375 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.390 0.610 35 H 0.105 0.895 36 H 0.127 0.873 37 H 0.267 0.733 38 H 0.116 0.884 39 H 0.109 0.891 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.054 0.946 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.982 18.461 -9.951 22.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.076 3.924 3 C -0.194 4.194 4 C -0.187 4.187 5 C 0.053 3.947 6 H 0.095 0.905 7 N -0.388 5.388 8 C 0.027 3.973 9 C -0.164 4.164 10 C -0.209 4.209 11 C 0.061 3.939 12 O -0.094 6.094 13 C -0.463 4.463 14 H 0.106 0.894 15 C -0.167 4.167 16 N -0.506 5.506 17 Si 0.763 3.237 18 H -0.193 1.193 19 H -0.203 1.203 20 H -0.203 1.203 21 C -0.170 4.170 22 C -0.169 4.169 23 C -0.212 4.212 24 C -0.017 4.017 25 O -0.295 6.295 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.223 0.777 35 H 0.123 0.877 36 H 0.145 0.855 37 H 0.076 0.924 38 H 0.134 0.866 39 H 0.127 0.873 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.072 0.928 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.613 18.266 -10.233 21.957 hybrid contribution 0.565 -0.515 1.216 1.436 sum 7.178 17.751 -9.017 21.165 Atomic orbital electron populations 1.22490 0.95591 1.03020 1.02875 1.21417 0.93206 0.92742 0.85079 1.21750 1.01901 0.93278 1.02496 1.22460 1.02062 0.95574 0.98561 1.20725 0.98376 0.89949 0.85645 0.90486 1.44267 1.30199 1.29802 1.34541 1.17393 0.94336 0.89667 0.95892 1.20236 1.00839 0.97579 0.97765 1.20998 0.97675 0.98890 1.03377 1.19234 0.92045 0.88620 0.93989 1.83986 1.51460 1.34514 1.39415 1.21283 1.09561 1.14852 1.00603 0.89413 1.25219 0.95744 0.96658 0.99095 1.70057 1.16293 1.24980 1.39230 0.85698 0.78680 0.78970 0.80357 1.19265 1.20311 1.20312 1.20022 1.01734 0.96808 0.98459 1.20179 0.96380 0.98474 1.01878 1.22761 1.02345 1.00738 0.95354 1.22591 0.98891 0.81826 0.98419 1.87952 1.73763 1.24777 1.42979 0.91318 0.91733 0.91631 0.91846 0.91764 0.91094 0.90449 0.90845 0.77686 0.87663 0.85511 0.92352 0.86558 0.87261 0.91085 0.90236 0.92793 0.88866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.52 7.93 37.16 0.29 -1.23 16 2 C 0.12 1.04 1.11 -90.57 -0.10 0.94 16 3 C -0.14 -1.02 8.85 37.16 0.33 -0.69 16 4 C -0.15 -1.40 4.40 -26.59 -0.12 -1.52 16 5 C 0.16 1.80 1.91 -67.75 -0.13 1.68 16 6 H 0.08 0.93 4.97 -51.93 -0.26 0.67 16 7 N -0.75 -10.01 5.26 -51.94 -0.27 -10.29 16 8 C 0.12 2.13 6.64 -83.70 -0.56 1.58 16 9 C -0.14 -2.63 9.89 -39.40 -0.39 -3.01 16 10 C -0.19 -4.17 9.16 -39.42 -0.36 -4.53 16 11 C 0.11 2.78 6.65 -39.09 -0.26 2.52 16 12 O -0.19 -5.49 9.76 -0.04 0.00 -5.49 16 13 C -0.39 -11.02 9.48 30.88 0.29 -10.72 16 14 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 15 C 0.04 1.00 5.49 -17.52 -0.10 0.91 16 16 N -0.87 -26.06 13.67 55.48 0.76 -25.30 16 17 Si 0.94 20.99 29.55 -169.99 -5.02 15.97 16 18 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 21 C -0.15 -3.21 9.98 -39.42 -0.39 -3.60 16 22 C -0.15 -2.64 8.89 -39.40 -0.35 -2.99 16 23 C -0.17 -1.90 5.68 -26.59 -0.15 -2.05 16 24 C 0.06 0.58 6.51 37.21 0.24 0.82 16 25 O -0.38 -4.02 10.24 -35.23 -0.36 -4.38 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.58 4.98 -51.93 -0.26 0.32 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.39 4.61 8.62 -40.82 -0.35 4.26 16 35 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 36 H 0.13 2.81 5.63 -52.49 -0.30 2.51 16 37 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 39 H 0.11 1.68 6.08 -52.48 -0.32 1.36 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.08 0.96 7.72 -51.93 -0.40 0.56 16 42 H 0.05 0.49 6.34 -51.93 -0.33 0.16 16 43 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 339.61 15.07 5.12 5.12 Total: -1.00 -31.49 339.61 -7.80 -39.29 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -6.27 Total: 6.98 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: -1.75 Total: -21.89 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: 0.49 Total: -35.59 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -0.36 Total: -9.88 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.49 -7.80 -39.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070346054.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.877 kcal (2) G-P(sol) polarization free energy of solvation -31.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds