Wall clock time and date at job start Tue Mar 31 2020 07:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.48216 * 2 1 4 4 C 1.53096 * 109.48007 * 120.02288 * 2 1 3 5 5 C 1.53177 * 109.16237 * 62.37531 * 4 2 1 6 6 H 1.08997 * 109.54260 * 297.01999 * 5 4 2 7 7 N 1.46503 * 109.53884 * 176.84802 * 5 4 2 8 8 C 1.39784 * 119.99646 * 155.17547 * 7 5 4 9 9 C 1.38952 * 120.00433 * 179.97438 * 8 7 5 10 10 C 1.38016 * 119.99222 * 180.02562 * 9 8 7 11 11 C 1.38898 * 120.00481 * 359.97438 * 10 9 8 12 12 O 1.35795 * 119.98946 * 180.02562 * 11 10 9 13 13 C 1.34811 * 117.00069 * 5.54594 * 12 11 10 14 14 H 1.07996 * 120.00278 * 354.94303 * 13 12 11 15 15 C 1.38630 * 119.99901 * 174.66583 * 13 12 11 16 16 N 1.31579 * 119.99909 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00157 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46900 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47208 * 119.99672 * 17 15 13 20 20 H 1.48500 * 109.47084 * 239.99895 * 17 15 13 21 21 C 1.38893 * 120.01535 * 0.30020 * 11 10 9 22 22 C 1.38013 * 120.00341 * 359.44607 * 21 11 10 23 23 C 1.53175 * 109.11435 * 56.93471 * 5 4 2 24 24 C 1.53104 * 109.15419 * 303.15465 * 23 5 4 25 25 O 1.42901 * 109.47913 * 239.96602 * 2 1 3 26 26 H 1.08998 * 109.46734 * 299.97917 * 1 2 3 27 27 H 1.09001 * 109.47165 * 59.97735 * 1 2 3 28 28 H 1.08997 * 109.47431 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47100 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46690 * 300.02369 * 3 2 1 31 31 H 1.08992 * 109.47393 * 60.02426 * 3 2 1 32 32 H 1.08994 * 109.52062 * 302.46458 * 4 2 1 33 33 H 1.09006 * 109.57158 * 182.30771 * 4 2 1 34 34 H 0.96996 * 120.00535 * 335.17269 * 7 5 4 35 35 H 1.07992 * 120.00414 * 359.97438 * 9 8 7 36 36 H 1.08001 * 119.99251 * 179.97438 * 10 9 8 37 37 H 0.97000 * 119.99981 * 180.02562 * 16 15 13 38 38 H 1.07999 * 120.00179 * 179.70368 * 21 11 10 39 39 H 1.08003 * 120.00584 * 180.26940 * 22 21 11 40 40 H 1.08999 * 109.52247 * 62.96856 * 23 5 4 41 41 H 1.08997 * 109.52621 * 183.16012 * 23 5 4 42 42 H 1.08998 * 109.40569 * 297.48825 * 24 23 5 43 43 H 1.09004 * 109.49348 * 177.51024 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0403 1.4424 0.0000 4 6 2.0405 -0.7222 1.2497 5 6 1.5757 -2.1812 1.2124 6 1 0.4868 -2.2179 1.2427 7 7 2.1225 -2.8993 2.3664 8 6 1.4729 -4.0373 2.8533 9 6 1.9917 -4.7188 3.9474 10 6 1.3504 -5.8426 4.4276 11 6 0.1863 -6.2920 3.8176 12 8 -0.4447 -7.3975 4.2906 13 6 0.0442 -7.9443 5.4218 14 1 0.9481 -7.5525 5.8642 15 6 -0.6166 -9.0059 6.0202 16 7 -1.7212 -9.4795 5.4845 17 14 0.0603 -9.7632 7.5879 18 1 1.3035 -9.0539 7.9835 19 1 -0.9469 -9.6399 8.6722 20 1 0.3626 -11.1981 7.3541 21 6 -0.3293 -5.6143 2.7203 22 6 0.3086 -4.4874 2.2430 23 6 2.0746 -2.8337 -0.0806 24 6 1.5645 -2.0286 -1.2788 25 8 2.0065 -0.6743 -1.1663 26 1 -0.3633 0.5135 0.8902 27 1 -0.3633 0.5142 -0.8898 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1302 1.4422 -0.0005 30 1 1.6766 1.9564 -0.8898 31 1 1.6774 1.9562 0.8901 32 1 1.6421 -0.2355 2.1398 33 1 3.1298 -0.6874 1.2721 34 1 2.9352 -2.5852 2.7925 35 1 2.8970 -4.3696 4.4215 36 1 1.7538 -6.3725 5.2778 37 1 -2.1838 -10.2221 5.9035 38 1 -1.2318 -5.9668 2.2432 39 1 -0.0947 -3.9579 1.3924 40 1 3.1645 -2.8428 -0.0869 41 1 1.7005 -3.8557 -0.1408 42 1 0.4749 -2.0552 -1.2955 43 1 1.9527 -2.4624 -2.2003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070346054.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:52 Heat of formation + Delta-G solvation = -70.227997 kcal Electronic energy + Delta-G solvation = -23137.605603 eV Core-core repulsion = 19761.404328 eV Total energy + Delta-G solvation = -3376.201275 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.26685 -40.53339 -38.67436 -36.22570 -34.53873 -34.17057 -32.63919 -31.68256 -29.54032 -28.26166 -28.07014 -26.98924 -24.99077 -23.64973 -22.93141 -21.91169 -20.25577 -19.63709 -18.88280 -17.93369 -17.20413 -17.02393 -16.48332 -16.15430 -15.78623 -15.57850 -15.43526 -15.37324 -14.90466 -14.61189 -14.36874 -14.08640 -13.97656 -13.54245 -13.42942 -13.25556 -13.01977 -12.94131 -12.81683 -12.73069 -12.60085 -12.38981 -12.09669 -12.06814 -12.04749 -11.82472 -11.10022 -11.07575 -10.87787 -10.47128 -10.17960 -9.78354 -8.39757 -7.94827 -6.03335 0.57598 0.92400 1.36641 1.45384 1.54723 2.22240 2.54933 2.85166 2.90763 3.24600 3.65650 3.66885 3.85652 3.87741 4.06058 4.08702 4.14172 4.20329 4.28080 4.38086 4.45663 4.56205 4.63717 4.71342 4.75125 4.81615 4.88732 4.89825 4.92629 5.03196 5.07655 5.11253 5.11439 5.19939 5.27345 5.34980 5.41498 5.48400 5.54681 5.78150 5.98103 6.11245 6.34677 6.60176 7.01971 7.06609 7.93177 8.85031 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.040649 B = 0.002852 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.666210 B = 9814.242043 C =10045.663956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.111 3.889 3 C -0.136 4.136 4 C -0.141 4.141 5 C 0.155 3.845 6 H 0.075 0.925 7 N -0.740 5.740 8 C 0.154 3.846 9 C -0.145 4.145 10 C -0.193 4.193 11 C 0.063 3.937 12 O -0.243 6.243 13 C -0.405 4.405 14 H 0.098 0.902 15 C -0.029 4.029 16 N -0.927 5.927 17 Si 1.017 2.983 18 H -0.252 1.252 19 H -0.270 1.270 20 H -0.270 1.270 21 C -0.155 4.155 22 C -0.145 4.145 23 C -0.168 4.168 24 C 0.061 3.939 25 O -0.388 6.388 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.402 0.598 35 H 0.139 0.861 36 H 0.118 0.882 37 H 0.270 0.730 38 H 0.113 0.887 39 H 0.139 0.861 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.848 21.132 -10.101 25.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.071 3.929 3 C -0.193 4.193 4 C -0.179 4.179 5 C 0.049 3.951 6 H 0.093 0.907 7 N -0.373 5.373 8 C 0.054 3.946 9 C -0.168 4.168 10 C -0.213 4.213 11 C 0.013 3.987 12 O -0.151 6.151 13 C -0.481 4.481 14 H 0.115 0.885 15 C -0.225 4.225 16 N -0.567 5.567 17 Si 0.837 3.163 18 H -0.175 1.175 19 H -0.195 1.195 20 H -0.195 1.195 21 C -0.175 4.175 22 C -0.167 4.167 23 C -0.207 4.207 24 C -0.016 4.016 25 O -0.308 6.308 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.238 0.762 35 H 0.156 0.844 36 H 0.136 0.864 37 H 0.079 0.921 38 H 0.131 0.869 39 H 0.157 0.843 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.531 21.025 -10.425 24.970 hybrid contribution 0.100 -1.010 1.024 1.442 sum 8.631 20.015 -9.401 23.738 Atomic orbital electron populations 1.22496 0.95122 1.02782 1.03581 1.21577 0.93636 0.93362 0.84285 1.21770 1.01858 0.92291 1.03378 1.22411 1.02304 0.93944 0.99274 1.20912 0.98247 0.91096 0.84833 0.90737 1.44371 1.30084 1.28199 1.34650 1.17507 0.93224 0.89623 0.94261 1.20495 1.01685 0.96425 0.98153 1.21055 0.97147 0.99953 1.03125 1.19725 0.93782 0.89165 0.95983 1.83934 1.53541 1.37090 1.40505 1.21789 1.10104 1.15290 1.00965 0.88453 1.26526 0.96023 0.96977 1.02959 1.70209 1.18459 1.26336 1.41684 0.84552 0.78512 0.78023 0.75259 1.17526 1.19507 1.19514 1.20226 1.01937 0.97611 0.97708 1.20418 0.96432 0.97338 1.02509 1.22686 1.02077 1.00239 0.95732 1.22620 0.99323 0.81471 0.98214 1.87953 1.74100 1.25017 1.43750 0.90384 0.91366 0.92302 0.91947 0.91593 0.89581 0.89542 0.90484 0.76246 0.84361 0.86393 0.92149 0.86936 0.84289 0.91404 0.91407 0.92136 0.87873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.52 7.93 71.98 0.57 -1.95 16 2 C 0.11 1.66 1.11 -10.76 -0.01 1.65 16 3 C -0.14 -1.60 8.85 71.98 0.64 -0.97 16 4 C -0.14 -2.16 4.40 30.69 0.13 -2.02 16 5 C 0.15 2.99 1.91 45.11 0.09 3.07 16 6 H 0.07 1.54 4.97 -2.39 -0.01 1.53 16 7 N -0.74 -16.93 5.26 -318.23 -1.67 -18.60 16 8 C 0.15 4.86 6.64 38.21 0.25 5.12 16 9 C -0.15 -5.07 9.89 22.39 0.22 -4.84 16 10 C -0.19 -8.57 9.16 22.38 0.20 -8.36 16 11 C 0.06 3.21 6.65 22.58 0.15 3.36 16 12 O -0.24 -15.00 9.76 -23.05 -0.22 -15.22 16 13 C -0.40 -24.18 9.48 67.91 0.64 -23.54 16 14 H 0.10 5.35 5.20 -2.91 -0.02 5.33 16 15 C -0.03 -1.68 5.49 84.82 0.47 -1.21 16 16 N -0.93 -58.39 13.67 21.61 0.30 -58.10 16 17 Si 1.02 44.02 29.55 68.60 2.03 46.05 16 18 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 19 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 20 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 21 C -0.16 -6.74 9.98 22.37 0.22 -6.51 16 22 C -0.14 -4.96 8.89 22.39 0.20 -4.76 16 23 C -0.17 -3.24 5.68 30.69 0.17 -3.07 16 24 C 0.06 1.03 6.51 72.02 0.47 1.50 16 25 O -0.39 -7.27 10.24 -148.98 -1.53 -8.79 16 26 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 28 H 0.06 0.89 4.98 -2.39 -0.01 0.88 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 31 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.40 7.76 8.62 -92.71 -0.80 6.96 16 35 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 36 H 0.12 5.34 5.63 -2.91 -0.02 5.32 16 37 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 38 H 0.11 4.84 8.06 -2.91 -0.02 4.81 16 39 H 0.14 3.91 6.08 -2.91 -0.02 3.89 16 40 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.07 1.48 7.72 -2.39 -0.02 1.46 16 42 H 0.06 0.95 6.34 -2.39 -0.02 0.93 16 43 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -72.21 339.61 3.54 -68.66 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: 0.22 Total: 28.55 kcal Atomic # 6 Polarization: -46.96 SS G_CDS: 4.42 Total: -42.54 kcal Atomic # 7 Polarization: -75.32 SS G_CDS: -1.38 Total: -76.70 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -1.75 Total: -24.02 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -72.21 3.54 -68.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070346054.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.567 kcal (2) G-P(sol) polarization free energy of solvation -72.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds