Wall clock time and date at job start Tue Mar 31 2020 07:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47578 * 2 1 4 4 C 1.53080 * 109.48150 * 120.02425 * 2 1 3 5 5 C 1.53179 * 109.16247 * 177.59208 * 4 2 1 6 6 H 1.09005 * 109.54250 * 62.88957 * 5 4 2 7 7 N 1.46504 * 109.54480 * 183.05893 * 5 4 2 8 8 C 1.39781 * 120.00117 * 204.99871 * 7 5 4 9 9 C 1.38946 * 120.00694 * 359.73296 * 8 7 5 10 10 C 1.38011 * 119.99307 * 179.71694 * 9 8 7 11 11 C 1.38900 * 120.00626 * 0.55442 * 10 9 8 12 12 O 1.35792 * 119.99649 * 179.69700 * 11 10 9 13 13 C 1.34811 * 117.00052 * 174.48023 * 12 11 10 14 14 H 1.07996 * 120.00114 * 5.06236 * 13 12 11 15 15 C 1.38625 * 119.99885 * 185.06021 * 13 12 11 16 16 N 1.31585 * 120.00090 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99819 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47103 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46938 * 120.00038 * 17 15 13 20 20 H 1.48501 * 109.47127 * 239.99651 * 17 15 13 21 21 C 1.38899 * 120.00933 * 359.72359 * 11 10 9 22 22 C 1.38008 * 120.01043 * 359.97438 * 21 11 10 23 23 C 1.53173 * 109.03818 * 303.01976 * 5 4 2 24 24 C 1.53090 * 109.16138 * 56.98099 * 23 5 4 25 25 O 1.42902 * 109.42600 * 302.39542 * 24 23 5 26 26 H 1.09001 * 109.47475 * 60.00376 * 1 2 3 27 27 H 1.09008 * 109.46656 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47012 * 299.99661 * 1 2 3 29 29 H 1.08999 * 109.46924 * 60.00586 * 3 2 1 30 30 H 1.09000 * 109.47109 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47096 * 299.99985 * 3 2 1 32 32 H 1.09002 * 109.52342 * 297.49730 * 4 2 1 33 33 H 1.09002 * 109.52706 * 57.68868 * 4 2 1 34 34 H 0.97002 * 119.99534 * 25.00586 * 7 5 4 35 35 H 1.08000 * 120.00385 * 359.97438 * 9 8 7 36 36 H 1.07999 * 119.99802 * 180.25447 * 10 9 8 37 37 H 0.97000 * 119.99971 * 180.02562 * 16 15 13 38 38 H 1.08009 * 119.99795 * 179.97438 * 21 11 10 39 39 H 1.07996 * 120.01010 * 180.02562 * 22 21 11 40 40 H 1.09000 * 109.52255 * 176.88245 * 23 5 4 41 41 H 1.08995 * 109.52389 * 297.07152 * 23 5 4 42 42 H 1.08997 * 109.48197 * 62.37607 * 24 23 5 43 43 H 1.09000 * 109.48195 * 182.39763 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4425 0.0000 4 6 2.0406 -0.7221 1.2495 5 6 3.5711 -0.7707 1.2121 6 1 3.9689 0.2438 1.2407 7 7 4.0660 -1.5238 2.3672 8 6 5.3542 -1.2876 2.8557 9 6 6.1675 -0.3426 2.2425 10 6 7.4372 -0.1055 2.7287 11 6 7.9063 -0.8196 3.8238 12 8 9.1578 -0.5905 4.2982 13 6 9.5103 -1.2323 5.4302 14 1 8.8404 -1.9550 5.8722 15 6 10.7326 -0.9646 6.0268 16 7 11.5486 -0.0838 5.4885 17 14 11.2207 -1.8534 7.5957 18 1 10.1360 -2.7860 7.9941 19 1 12.4709 -2.6199 7.3618 20 1 11.4435 -0.8611 8.6778 21 6 7.0955 -1.7685 4.4334 22 6 5.8235 -2.0016 3.9516 23 6 4.0177 -1.4599 -0.0809 24 6 3.4307 -0.7093 -1.2791 25 8 2.0066 -0.6739 -1.1666 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6769 1.9563 0.8900 30 1 3.1302 1.4424 -0.0005 31 1 1.6769 1.9564 -0.8900 32 1 1.7149 -0.1841 2.1398 33 1 1.6444 -1.7373 1.2710 34 1 3.4997 -2.1864 2.7929 35 1 5.8046 0.2093 1.3881 36 1 8.0679 0.6319 2.2546 37 1 12.4041 0.1032 5.9058 38 1 7.4606 -2.3240 5.2847 39 1 5.1929 -2.7391 4.4258 40 1 5.1059 -1.4495 -0.1421 41 1 3.6615 -2.4900 -0.0863 42 1 3.8192 0.3090 -1.2959 43 1 3.7102 -1.2201 -2.2005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070346055.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:55 Heat of formation + Delta-G solvation = -50.212890 kcal Electronic energy + Delta-G solvation = -23136.385889 eV Core-core repulsion = 19761.052534 eV Total energy + Delta-G solvation = -3375.333355 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.36808 -38.92821 -37.09306 -34.92081 -33.81724 -32.22768 -31.35670 -30.11033 -28.52646 -27.60353 -26.70874 -25.13726 -23.97797 -22.34086 -21.61963 -20.49559 -19.42321 -17.82707 -17.18468 -16.66084 -16.29281 -15.97420 -15.26391 -14.89855 -14.43022 -14.38604 -14.17834 -13.77497 -13.46284 -13.42815 -13.14689 -12.81338 -12.56853 -12.44217 -12.42932 -12.17681 -11.96141 -11.86497 -11.58276 -11.41454 -11.35287 -11.22230 -11.08525 -10.83685 -10.53381 -10.35142 -10.24423 -9.69357 -9.23186 -9.18145 -8.45175 -8.17961 -6.40771 -6.32698 -3.89938 2.19312 2.56364 3.17762 3.19149 3.24374 3.50969 3.74504 4.05722 4.44039 4.56176 4.61689 4.73814 4.79277 4.99086 5.03719 5.18015 5.20424 5.21764 5.31398 5.39473 5.41269 5.49731 5.50972 5.61080 5.65873 5.72201 5.76137 5.81875 5.83256 5.97371 5.98995 6.17107 6.21729 6.27014 6.53709 6.85681 6.90842 7.07514 7.12872 7.32430 7.44691 7.63856 7.97363 8.11805 8.23747 9.13358 9.87850 10.86097 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.040630 B = 0.002852 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.974337 B = 9814.740986 C =10045.702609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.115 3.885 3 C -0.182 4.182 4 C -0.148 4.148 5 C 0.160 3.840 6 H 0.077 0.923 7 N -0.754 5.754 8 C 0.125 3.875 9 C -0.147 4.147 10 C -0.150 4.150 11 C 0.114 3.886 12 O -0.189 6.189 13 C -0.386 4.386 14 H 0.089 0.911 15 C 0.036 3.964 16 N -0.869 5.869 17 Si 0.938 3.062 18 H -0.268 1.268 19 H -0.277 1.277 20 H -0.277 1.277 21 C -0.189 4.189 22 C -0.142 4.142 23 C -0.173 4.173 24 C 0.060 3.940 25 O -0.375 6.375 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.390 0.610 35 H 0.109 0.891 36 H 0.116 0.884 37 H 0.267 0.733 38 H 0.127 0.873 39 H 0.105 0.895 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.054 0.946 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.725 -0.462 -9.962 22.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.076 3.924 3 C -0.240 4.240 4 C -0.187 4.187 5 C 0.053 3.947 6 H 0.095 0.905 7 N -0.388 5.388 8 C 0.027 3.973 9 C -0.169 4.169 10 C -0.170 4.170 11 C 0.061 3.939 12 O -0.094 6.094 13 C -0.463 4.463 14 H 0.106 0.894 15 C -0.167 4.167 16 N -0.506 5.506 17 Si 0.763 3.237 18 H -0.193 1.193 19 H -0.203 1.203 20 H -0.203 1.203 21 C -0.209 4.209 22 C -0.164 4.164 23 C -0.212 4.212 24 C -0.017 4.017 25 O -0.295 6.295 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.223 0.777 35 H 0.127 0.873 36 H 0.134 0.866 37 H 0.076 0.924 38 H 0.145 0.855 39 H 0.123 0.877 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.072 0.928 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -19.418 -0.179 -10.244 21.955 hybrid contribution 0.301 -0.708 1.210 1.434 sum -19.118 -0.887 -9.034 21.163 Atomic orbital electron populations 1.21755 0.92364 1.02814 1.02495 1.21417 0.94751 0.91200 0.85079 1.22492 1.02305 0.96305 1.02874 1.22461 0.95691 1.01951 0.98559 1.20725 0.92563 0.95784 0.85628 0.90473 1.44265 1.14052 1.46040 1.34441 1.17393 0.85715 0.98360 0.95818 1.20178 0.94225 1.00783 1.01724 1.20025 0.95911 1.02624 0.98466 1.19233 0.86381 0.94246 0.94029 1.83985 1.23430 1.62620 1.39339 1.21282 1.03074 1.21386 1.00555 0.89412 1.25219 0.95332 0.97057 0.99111 1.70060 1.09440 1.31848 1.39218 0.85698 0.78831 0.78813 0.80360 1.19265 1.20316 1.20306 1.20997 0.94560 1.02027 1.03348 1.20235 0.96498 1.01928 0.97756 1.22759 1.02176 1.00908 0.95363 1.22590 0.80885 0.99828 0.98419 1.87952 1.21192 1.77374 1.42965 0.91767 0.91848 0.91091 0.91315 0.91635 0.91735 0.90444 0.90847 0.77686 0.87261 0.86559 0.92353 0.85511 0.87661 0.90259 0.91072 0.92779 0.88869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 8.85 37.16 0.33 -0.69 16 2 C 0.12 1.04 1.11 -90.57 -0.10 0.94 16 3 C -0.18 -1.53 7.93 37.16 0.29 -1.23 16 4 C -0.15 -1.40 4.40 -26.60 -0.12 -1.52 16 5 C 0.16 1.80 1.91 -67.75 -0.13 1.67 16 6 H 0.08 0.93 4.96 -51.93 -0.26 0.67 16 7 N -0.75 -10.01 5.26 -51.94 -0.27 -10.28 16 8 C 0.12 2.13 6.65 -83.71 -0.56 1.58 16 9 C -0.15 -2.64 8.90 -39.40 -0.35 -2.99 16 10 C -0.15 -3.21 9.98 -39.42 -0.39 -3.60 16 11 C 0.11 2.78 6.65 -39.09 -0.26 2.52 16 12 O -0.19 -5.49 9.76 -0.03 0.00 -5.49 16 13 C -0.39 -11.01 9.48 30.88 0.29 -10.72 16 14 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 15 C 0.04 1.00 5.49 -17.51 -0.10 0.91 16 16 N -0.87 -26.07 13.67 55.48 0.76 -25.31 16 17 Si 0.94 20.99 29.55 -169.99 -5.02 15.97 16 18 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 20 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 21 C -0.19 -4.17 9.16 -39.42 -0.36 -4.53 16 22 C -0.14 -2.62 9.89 -39.40 -0.39 -3.01 16 23 C -0.17 -1.90 5.68 -26.60 -0.15 -2.05 16 24 C 0.06 0.58 6.51 37.20 0.24 0.82 16 25 O -0.38 -4.02 10.24 -35.23 -0.36 -4.38 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.58 4.98 -51.93 -0.26 0.32 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.39 4.61 8.62 -40.82 -0.35 4.26 16 35 H 0.11 1.68 6.08 -52.49 -0.32 1.36 16 36 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 37 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.13 2.81 5.63 -52.48 -0.30 2.51 16 39 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.08 0.96 7.73 -51.93 -0.40 0.56 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.05 0.49 6.34 -51.93 -0.33 0.16 16 43 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 339.64 15.07 5.12 5.12 Total: -1.00 -31.49 339.64 -7.80 -39.29 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -6.27 Total: 6.98 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: -1.75 Total: -21.89 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: 0.49 Total: -35.59 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -0.36 Total: -9.88 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.49 -7.80 -39.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070346055.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.920 kcal (2) G-P(sol) polarization free energy of solvation -31.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds