Wall clock time and date at job start Tue Mar 31 2020 07:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47578 * 2 1 4 4 C 1.53080 * 109.48150 * 120.02425 * 2 1 3 5 5 C 1.53179 * 109.16247 * 177.59208 * 4 2 1 6 6 H 1.09005 * 109.54250 * 62.88957 * 5 4 2 7 7 N 1.46504 * 109.54480 * 183.05893 * 5 4 2 8 8 C 1.39781 * 120.00117 * 204.99871 * 7 5 4 9 9 C 1.38946 * 120.00694 * 359.73296 * 8 7 5 10 10 C 1.38011 * 119.99307 * 179.71694 * 9 8 7 11 11 C 1.38900 * 120.00626 * 0.55442 * 10 9 8 12 12 O 1.35792 * 119.99649 * 179.69700 * 11 10 9 13 13 C 1.34811 * 117.00052 * 174.48023 * 12 11 10 14 14 H 1.07996 * 120.00114 * 5.06236 * 13 12 11 15 15 C 1.38625 * 119.99885 * 185.06021 * 13 12 11 16 16 N 1.31585 * 120.00090 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99819 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47103 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46938 * 120.00038 * 17 15 13 20 20 H 1.48501 * 109.47127 * 239.99651 * 17 15 13 21 21 C 1.38899 * 120.00933 * 359.72359 * 11 10 9 22 22 C 1.38008 * 120.01043 * 359.97438 * 21 11 10 23 23 C 1.53173 * 109.03818 * 303.01976 * 5 4 2 24 24 C 1.53090 * 109.16138 * 56.98099 * 23 5 4 25 25 O 1.42902 * 109.42600 * 302.39542 * 24 23 5 26 26 H 1.09001 * 109.47475 * 60.00376 * 1 2 3 27 27 H 1.09008 * 109.46656 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47012 * 299.99661 * 1 2 3 29 29 H 1.08999 * 109.46924 * 60.00586 * 3 2 1 30 30 H 1.09000 * 109.47109 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47096 * 299.99985 * 3 2 1 32 32 H 1.09002 * 109.52342 * 297.49730 * 4 2 1 33 33 H 1.09002 * 109.52706 * 57.68868 * 4 2 1 34 34 H 0.97002 * 119.99534 * 25.00586 * 7 5 4 35 35 H 1.08000 * 120.00385 * 359.97438 * 9 8 7 36 36 H 1.07999 * 119.99802 * 180.25447 * 10 9 8 37 37 H 0.97000 * 119.99971 * 180.02562 * 16 15 13 38 38 H 1.08009 * 119.99795 * 179.97438 * 21 11 10 39 39 H 1.07996 * 120.01010 * 180.02562 * 22 21 11 40 40 H 1.09000 * 109.52255 * 176.88245 * 23 5 4 41 41 H 1.08995 * 109.52389 * 297.07152 * 23 5 4 42 42 H 1.08997 * 109.48197 * 62.37607 * 24 23 5 43 43 H 1.09000 * 109.48195 * 182.39763 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4425 0.0000 4 6 2.0406 -0.7221 1.2495 5 6 3.5711 -0.7707 1.2121 6 1 3.9689 0.2438 1.2407 7 7 4.0660 -1.5238 2.3672 8 6 5.3542 -1.2876 2.8557 9 6 6.1675 -0.3426 2.2425 10 6 7.4372 -0.1055 2.7287 11 6 7.9063 -0.8196 3.8238 12 8 9.1578 -0.5905 4.2982 13 6 9.5103 -1.2323 5.4302 14 1 8.8404 -1.9550 5.8722 15 6 10.7326 -0.9646 6.0268 16 7 11.5486 -0.0838 5.4885 17 14 11.2207 -1.8534 7.5957 18 1 10.1360 -2.7860 7.9941 19 1 12.4709 -2.6199 7.3618 20 1 11.4435 -0.8611 8.6778 21 6 7.0955 -1.7685 4.4334 22 6 5.8235 -2.0016 3.9516 23 6 4.0177 -1.4599 -0.0809 24 6 3.4307 -0.7093 -1.2791 25 8 2.0066 -0.6739 -1.1666 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6769 1.9563 0.8900 30 1 3.1302 1.4424 -0.0005 31 1 1.6769 1.9564 -0.8900 32 1 1.7149 -0.1841 2.1398 33 1 1.6444 -1.7373 1.2710 34 1 3.4997 -2.1864 2.7929 35 1 5.8046 0.2093 1.3881 36 1 8.0679 0.6319 2.2546 37 1 12.4041 0.1032 5.9058 38 1 7.4606 -2.3240 5.2847 39 1 5.1929 -2.7391 4.4258 40 1 5.1059 -1.4495 -0.1421 41 1 3.6615 -2.4900 -0.0863 42 1 3.8192 0.3090 -1.2959 43 1 3.7102 -1.2201 -2.2005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070346055.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:55 Heat of formation + Delta-G solvation = -70.269431 kcal Electronic energy + Delta-G solvation = -23137.255606 eV Core-core repulsion = 19761.052534 eV Total energy + Delta-G solvation = -3376.203072 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.26787 -40.53407 -38.67436 -36.22486 -34.53909 -34.16973 -32.64019 -31.68347 -29.53856 -28.26153 -28.06934 -26.98951 -24.98923 -23.65026 -22.93129 -21.91131 -20.25737 -19.63758 -18.88282 -17.93354 -17.20479 -17.02318 -16.48225 -16.15397 -15.78426 -15.57792 -15.43739 -15.37233 -14.90392 -14.61303 -14.36947 -14.08613 -13.97774 -13.54229 -13.42830 -13.25549 -13.02048 -12.94162 -12.81641 -12.72985 -12.59980 -12.39111 -12.09625 -12.06865 -12.04479 -11.82514 -11.09937 -11.07539 -10.87802 -10.47167 -10.17996 -9.78380 -8.39745 -7.94849 -6.03336 0.57621 0.92372 1.36642 1.45377 1.54739 2.22237 2.54895 2.85195 2.90752 3.24684 3.65609 3.66858 3.85729 3.87745 4.06081 4.08767 4.14178 4.20369 4.28073 4.38137 4.45648 4.56194 4.63731 4.71338 4.75075 4.81628 4.88744 4.89804 4.92615 5.03183 5.07628 5.11225 5.11454 5.19901 5.27342 5.34965 5.41480 5.48391 5.54695 5.78149 5.98105 6.11250 6.34686 6.60175 7.01956 7.06621 7.93172 8.85043 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.040630 B = 0.002852 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.974337 B = 9814.740986 C =10045.702609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.111 3.889 3 C -0.183 4.183 4 C -0.141 4.141 5 C 0.155 3.845 6 H 0.075 0.925 7 N -0.740 5.740 8 C 0.155 3.845 9 C -0.145 4.145 10 C -0.155 4.155 11 C 0.063 3.937 12 O -0.243 6.243 13 C -0.405 4.405 14 H 0.098 0.902 15 C -0.029 4.029 16 N -0.927 5.927 17 Si 1.017 2.983 18 H -0.252 1.252 19 H -0.270 1.270 20 H -0.270 1.270 21 C -0.193 4.193 22 C -0.145 4.145 23 C -0.168 4.168 24 C 0.061 3.939 25 O -0.389 6.389 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.402 0.598 35 H 0.139 0.861 36 H 0.113 0.887 37 H 0.270 0.730 38 H 0.118 0.882 39 H 0.139 0.861 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.862 -1.340 -10.116 25.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.071 3.929 3 C -0.240 4.240 4 C -0.179 4.179 5 C 0.049 3.951 6 H 0.093 0.907 7 N -0.373 5.373 8 C 0.054 3.946 9 C -0.167 4.167 10 C -0.175 4.175 11 C 0.013 3.987 12 O -0.151 6.151 13 C -0.481 4.481 14 H 0.115 0.885 15 C -0.225 4.225 16 N -0.567 5.567 17 Si 0.837 3.163 18 H -0.175 1.175 19 H -0.195 1.195 20 H -0.195 1.195 21 C -0.213 4.213 22 C -0.168 4.168 23 C -0.207 4.207 24 C -0.016 4.016 25 O -0.308 6.308 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.238 0.762 35 H 0.157 0.843 36 H 0.131 0.869 37 H 0.078 0.922 38 H 0.136 0.864 39 H 0.156 0.844 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -22.656 -1.077 -10.441 24.969 hybrid contribution 0.921 -0.432 1.020 1.441 sum -21.735 -1.509 -9.421 23.737 Atomic orbital electron populations 1.21774 0.91105 1.03045 1.03375 1.21576 0.95733 0.91264 0.84287 1.22498 1.01852 0.96053 1.03577 1.22412 0.93780 1.02477 0.99268 1.20912 0.94106 0.95258 0.84821 0.90730 1.44369 1.12448 1.45923 1.34553 1.17507 0.86766 0.96133 0.94205 1.20417 0.92862 1.01058 1.02363 1.20229 0.97260 1.02268 0.97727 1.19725 0.86144 0.96760 0.96029 1.83933 1.26124 1.64586 1.40427 1.21787 1.03732 1.21700 1.00924 0.88451 1.26526 0.94984 0.97994 1.02983 1.70211 1.10284 1.34521 1.41679 0.84552 0.78818 0.77718 0.75256 1.17524 1.19518 1.19503 1.21055 0.95747 1.01377 1.03094 1.20495 0.95456 1.02663 0.98141 1.22684 1.01426 1.00896 0.95731 1.22620 0.80634 1.00153 0.98218 1.87952 1.21456 1.77688 1.43735 0.91597 0.91947 0.89580 0.90385 0.92306 0.91370 0.89544 0.90482 0.76244 0.84292 0.86938 0.92151 0.86393 0.84357 0.91425 0.91383 0.92125 0.87873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 8.85 71.98 0.64 -0.97 16 2 C 0.11 1.66 1.11 -10.76 -0.01 1.65 16 3 C -0.18 -2.53 7.93 71.98 0.57 -1.96 16 4 C -0.14 -2.16 4.40 30.68 0.13 -2.02 16 5 C 0.15 2.99 1.91 45.11 0.09 3.07 16 6 H 0.07 1.54 4.96 -2.38 -0.01 1.53 16 7 N -0.74 -16.92 5.26 -318.23 -1.67 -18.60 16 8 C 0.15 4.86 6.65 38.22 0.25 5.12 16 9 C -0.14 -4.96 8.90 22.39 0.20 -4.76 16 10 C -0.16 -6.74 9.98 22.37 0.22 -6.51 16 11 C 0.06 3.21 6.65 22.59 0.15 3.36 16 12 O -0.24 -15.00 9.76 -23.02 -0.22 -15.22 16 13 C -0.40 -24.18 9.48 67.91 0.64 -23.53 16 14 H 0.10 5.35 5.20 -2.91 -0.02 5.33 16 15 C -0.03 -1.68 5.49 84.82 0.47 -1.21 16 16 N -0.93 -58.40 13.67 21.61 0.30 -58.10 16 17 Si 1.02 44.02 29.55 68.60 2.03 46.05 16 18 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 19 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 20 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 21 C -0.19 -8.56 9.16 22.37 0.20 -8.36 16 22 C -0.15 -5.06 9.89 22.39 0.22 -4.84 16 23 C -0.17 -3.24 5.68 30.68 0.17 -3.07 16 24 C 0.06 1.03 6.51 72.01 0.47 1.50 16 25 O -0.39 -7.27 10.24 -148.98 -1.53 -8.79 16 26 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 28 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.06 0.89 4.98 -2.39 -0.01 0.88 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.40 7.76 8.62 -92.71 -0.80 6.96 16 35 H 0.14 3.91 6.08 -2.91 -0.02 3.89 16 36 H 0.11 4.84 8.06 -2.91 -0.02 4.81 16 37 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 38 H 0.12 5.33 5.63 -2.91 -0.02 5.32 16 39 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 40 H 0.07 1.48 7.73 -2.39 -0.02 1.46 16 41 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.06 0.95 6.34 -2.39 -0.02 0.94 16 43 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -72.20 339.64 3.55 -68.66 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: 0.22 Total: 28.55 kcal Atomic # 6 Polarization: -46.96 SS G_CDS: 4.42 Total: -42.54 kcal Atomic # 7 Polarization: -75.32 SS G_CDS: -1.38 Total: -76.70 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -1.75 Total: -24.02 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -72.20 3.55 -68.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070346055.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.610 kcal (2) G-P(sol) polarization free energy of solvation -72.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds