Wall clock time and date at job start Tue Mar 31 2020 07:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.48966 * 2 1 4 4 C 1.53083 * 109.48169 * 120.03375 * 2 1 3 5 5 C 1.53175 * 109.21739 * 62.34108 * 4 2 1 6 6 H 1.08996 * 109.54581 * 297.14812 * 5 4 2 7 7 N 1.46502 * 109.54221 * 176.87899 * 5 4 2 8 8 C 1.39678 * 119.99648 * 155.00364 * 7 5 4 9 9 C 1.39004 * 120.04159 * 359.72057 * 8 7 5 10 10 C 1.38149 * 120.06359 * 179.69876 * 9 8 7 11 11 C 1.38171 * 120.13900 * 0.60428 * 10 9 8 12 12 C 1.38911 * 120.08262 * 359.67415 * 11 10 9 13 13 O 1.35752 * 120.03877 * 180.02562 * 12 11 10 14 14 C 1.34832 * 117.00638 * 174.48490 * 13 12 11 15 15 H 1.08002 * 119.99218 * 5.05706 * 14 13 12 16 16 C 1.38650 * 120.00056 * 185.05992 * 14 13 12 17 17 N 1.31557 * 120.00043 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99834 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46884 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47245 * 119.99753 * 18 16 14 21 21 H 1.48504 * 109.46701 * 239.99831 * 18 16 14 22 22 C 1.38754 * 120.03848 * 180.02562 * 8 7 5 23 23 C 1.53313 * 108.96586 * 56.95451 * 5 4 2 24 24 C 1.53094 * 109.19536 * 303.05913 * 23 5 4 25 25 O 1.42903 * 109.41725 * 57.60420 * 24 23 5 26 26 H 1.08997 * 109.47019 * 299.96564 * 1 2 3 27 27 H 1.09004 * 109.46890 * 59.97062 * 1 2 3 28 28 H 1.09005 * 109.46874 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47135 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47078 * 300.03603 * 3 2 1 31 31 H 1.09001 * 109.46679 * 60.02727 * 3 2 1 32 32 H 1.09000 * 109.52317 * 182.28438 * 4 2 1 33 33 H 1.09007 * 109.52444 * 302.40450 * 4 2 1 34 34 H 0.96998 * 120.00144 * 335.00130 * 7 5 4 35 35 H 1.08003 * 119.96570 * 359.97438 * 9 8 7 36 36 H 1.07995 * 119.93360 * 180.28057 * 10 9 8 37 37 H 1.08007 * 119.96247 * 179.70099 * 11 10 9 38 38 H 0.97000 * 119.99843 * 180.02562 * 17 16 14 39 39 H 1.07998 * 120.06676 * 0.02562 * 22 8 7 40 40 H 1.08999 * 109.50552 * 183.13977 * 23 5 4 41 41 H 1.09002 * 109.55692 * 63.00169 * 23 5 4 42 42 H 1.09002 * 109.47813 * 297.62809 * 24 23 5 43 43 H 1.08996 * 109.47980 * 177.59351 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0405 1.4423 0.0000 4 6 2.0406 -0.7223 1.2494 5 6 1.5758 -2.1814 1.2136 6 1 0.4868 -2.2180 1.2422 7 7 2.1225 -2.8984 2.3682 8 6 1.4714 -4.0329 2.8580 9 6 0.3015 -4.4790 2.2542 10 6 -0.3394 -5.6046 2.7344 11 6 0.1730 -6.2833 3.8235 12 6 1.3386 -5.8394 4.4350 13 8 1.8415 -6.5071 5.5046 14 6 3.0336 -6.0933 5.9795 15 1 3.5050 -5.2150 5.5637 16 6 3.6543 -6.7952 7.0015 17 7 3.0798 -7.8647 7.5083 18 14 5.3056 -6.2213 7.6599 19 1 5.7342 -5.0029 6.9271 20 1 5.1809 -5.9112 9.1067 21 1 6.3145 -7.2941 7.4687 22 6 1.9882 -4.7124 3.9519 23 6 2.0765 -2.8322 -0.0811 24 6 1.5646 -2.0284 -1.2793 25 8 2.0066 -0.6741 -1.1665 26 1 -0.3633 0.5133 0.8903 27 1 -0.3633 0.5143 -0.8898 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1305 1.4420 -0.0005 30 1 1.6768 1.9565 -0.8897 31 1 1.6777 1.9561 0.8903 32 1 3.1298 -0.6874 1.2708 33 1 1.6431 -0.2352 2.1399 34 1 2.9367 -2.5853 2.7925 35 1 -0.1043 -3.9476 1.4061 36 1 -1.2458 -5.9519 2.2609 37 1 -0.3331 -7.1602 4.1995 38 1 3.5139 -8.3555 8.2235 39 1 2.8941 -4.3648 4.4261 40 1 1.7038 -3.8547 -0.1423 41 1 3.1665 -2.8409 -0.0873 42 1 0.4750 -2.0549 -1.2959 43 1 1.9531 -2.4621 -2.2007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070353116.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:59 Heat of formation + Delta-G solvation = -53.270909 kcal Electronic energy + Delta-G solvation = -23359.102241 eV Core-core repulsion = 19983.636281 eV Total energy + Delta-G solvation = -3375.465961 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.36565 -38.93960 -37.04851 -35.06059 -33.81595 -32.26211 -31.77445 -29.03789 -28.62415 -27.61545 -27.17965 -25.23006 -24.00564 -22.18694 -21.70062 -20.33587 -19.42792 -17.87126 -17.42274 -16.39839 -16.28060 -15.44797 -15.42359 -14.84406 -14.75086 -14.39611 -14.17888 -13.80817 -13.62811 -13.49433 -13.20314 -12.85365 -12.68175 -12.43171 -12.33222 -12.08958 -11.92759 -11.85485 -11.62695 -11.38744 -11.33505 -11.11084 -10.85899 -10.74822 -10.53907 -10.37723 -10.25823 -9.70055 -9.39000 -9.35303 -8.75456 -7.35107 -6.77034 -6.40441 -3.99613 2.38638 2.57025 3.14259 3.15398 3.20580 3.50832 3.71305 4.00083 4.44432 4.56732 4.63104 4.75795 4.79298 4.99181 5.04051 5.16046 5.19543 5.20983 5.31576 5.38394 5.40901 5.49648 5.51277 5.61707 5.71880 5.72679 5.82328 5.83190 5.95913 5.98695 6.01249 6.20100 6.29050 6.38341 6.65726 6.66186 7.04439 7.07942 7.16739 7.39422 7.49913 7.67890 8.02636 8.06045 8.21233 9.05885 9.78558 10.78041 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021616 B = 0.003542 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.025252 B = 7902.439504 C = 8735.463234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.116 3.884 3 C -0.137 4.137 4 C -0.150 4.150 5 C 0.157 3.843 6 H 0.081 0.919 7 N -0.748 5.748 8 C 0.250 3.750 9 C -0.281 4.281 10 C -0.040 4.040 11 C -0.237 4.237 12 C 0.190 3.810 13 O -0.179 6.179 14 C -0.388 4.388 15 H 0.091 0.909 16 C 0.038 3.962 17 N -0.864 5.864 18 Si 0.940 3.060 19 H -0.268 1.268 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.302 4.302 23 C -0.172 4.172 24 C 0.061 3.939 25 O -0.375 6.375 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.394 0.606 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.268 0.732 39 H 0.124 0.876 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.054 0.946 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.095 15.172 -14.908 21.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.076 3.924 3 C -0.194 4.194 4 C -0.189 4.189 5 C 0.051 3.949 6 H 0.099 0.901 7 N -0.379 5.379 8 C 0.149 3.851 9 C -0.304 4.304 10 C -0.059 4.059 11 C -0.257 4.257 12 C 0.136 3.864 13 O -0.082 6.082 14 C -0.465 4.465 15 H 0.108 0.892 16 C -0.166 4.166 17 N -0.500 5.500 18 Si 0.765 3.235 19 H -0.192 1.192 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.326 4.326 23 C -0.212 4.212 24 C -0.016 4.016 25 O -0.295 6.295 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.228 0.772 35 H 0.120 0.880 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.078 0.922 39 H 0.142 0.858 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.118 14.954 -14.850 21.304 hybrid contribution 1.058 0.182 0.705 1.285 sum -2.059 15.136 -14.145 20.819 Atomic orbital electron populations 1.22490 0.95622 1.02952 1.02867 1.21413 0.93173 0.92774 0.85017 1.21753 1.01984 0.93215 1.02493 1.22480 1.02253 0.95472 0.98647 1.20816 0.98555 0.90013 0.85515 0.90131 1.44594 1.29805 1.29573 1.33914 1.17466 0.90736 0.85537 0.91317 1.20073 1.00041 1.03419 1.06846 1.20372 0.97394 0.93705 0.94426 1.20038 0.99487 1.04868 1.01343 1.19068 0.91704 0.89500 0.86174 1.83986 1.34651 1.52003 1.37544 1.21347 0.94705 1.12124 1.18315 0.89157 1.25270 0.99456 0.95514 0.96338 1.70051 1.38263 1.16492 1.25171 0.85670 0.80382 0.78648 0.78831 1.19243 1.20198 1.20190 1.20512 1.06502 1.02248 1.03348 1.22770 1.02445 1.00754 0.95196 1.22579 0.98796 0.81852 0.98373 1.87955 1.73777 1.24765 1.42968 0.91303 0.91738 0.91677 0.91786 0.91760 0.91060 0.90708 0.90349 0.77212 0.87950 0.87253 0.86936 0.92170 0.85841 0.90170 0.90979 0.92827 0.88854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.53 7.94 37.16 0.29 -1.24 16 2 C 0.12 1.09 1.11 -90.57 -0.10 0.99 16 3 C -0.14 -1.08 8.85 37.16 0.33 -0.75 16 4 C -0.15 -1.53 4.39 -26.60 -0.12 -1.65 16 5 C 0.16 1.89 1.93 -67.68 -0.13 1.76 16 6 H 0.08 1.00 4.94 -51.93 -0.26 0.74 16 7 N -0.75 -11.14 5.26 -51.94 -0.27 -11.41 16 8 C 0.25 4.67 6.64 -83.81 -0.56 4.12 16 9 C -0.28 -4.97 8.96 -39.33 -0.35 -5.32 16 10 C -0.04 -0.74 10.03 -39.64 -0.40 -1.13 16 11 C -0.24 -5.18 9.99 -39.36 -0.39 -5.58 16 12 C 0.19 4.72 6.64 -39.14 -0.26 4.46 16 13 O -0.18 -5.21 9.76 0.04 0.00 -5.21 16 14 C -0.39 -11.04 9.49 30.88 0.29 -10.75 16 15 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 16 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 17 N -0.86 -25.70 13.67 55.48 0.76 -24.94 16 18 Si 0.94 20.81 29.55 -169.99 -5.02 15.79 16 19 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 20 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 21 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 22 C -0.30 -6.72 9.01 -39.19 -0.35 -7.07 16 23 C -0.17 -1.98 5.71 -26.52 -0.15 -2.13 16 24 C 0.06 0.60 6.52 37.21 0.24 0.84 16 25 O -0.38 -4.13 10.24 -35.23 -0.36 -4.49 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.57 4.98 -51.93 -0.26 0.31 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 34 H 0.39 5.55 8.62 -40.82 -0.35 5.20 16 35 H 0.10 1.55 6.15 -52.48 -0.32 1.23 16 36 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.11 2.40 8.06 -52.48 -0.42 1.97 16 38 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.12 2.77 5.64 -52.49 -0.30 2.48 16 40 H 0.08 0.99 7.84 -51.93 -0.41 0.59 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.05 0.48 6.34 -51.93 -0.33 0.15 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 339.89 15.07 5.12 5.12 Total: -1.00 -31.38 339.89 -7.81 -39.18 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -6.28 Total: 8.45 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: -1.75 Total: -22.48 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.49 Total: -36.36 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: -0.36 Total: -9.70 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.38 -7.81 -39.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070353116.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.089 kcal (2) G-P(sol) polarization free energy of solvation -31.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds